data_6XYR
#
_model_server_result.job_id            vJHUdd3VdeBX1wGieyTzVA 
_model_server_result.datetime_utc      '2024-11-04 20:47:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6XYR 
#
_exptl.entry_id    6XYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XYR 
_cell.length_a            86.38 
_cell.length_b            104.26 
_cell.length_c            63.95 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 152 A SER 152 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? 
metalc ? metalc2 A OD1 ASP 233 A ASP 233 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc3 A OD1 ASP 235 A ASP 235 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc4 A OD1 ASP 237 A ASP 237 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc5 A O THR 239 A THR 239 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 A OE1 GLU 244 A GLU 244 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc7 A OE2 GLU 244 A GLU 244 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc8 A OD1 ASP 269 A ASP 269 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc9 A OD1 ASP 271 A ASP 271 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc10 A OD1 ASN 273 A ASN 273 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc11 A O THR 275 A THR 275 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc12 A OE1 GLU 280 A GLU 280 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc13 A OE2 GLU 280 A GLU 280 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc14 A OD1 ASP 306 A ASP 306 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc15 A OD1 ASP 308 A ASP 308 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc16 A OD1 ASN 310 A ASN 310 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc17 A O TYR 312 A TYR 312 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc18 A OE1 GLU 317 A GLU 317 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc19 A OE2 GLU 317 A GLU 317 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc20 A OD1 ASP 342 A ASP 342 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc21 A OD1 ASP 344 A ASP 344 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc22 A OD1 ASP 346 A ASP 346 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc23 A O GLN 348 A GLN 348 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc24 A OE1 GLU 353 A GLU 353 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc25 A OE2 GLU 353 A GLU 353 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc26 B CA CA . A CA 401 1_555 N O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc27 C CA CA . A CA 402 1_555 N O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc28 D CA CA . A CA 403 1_555 N O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc29 E CA CA . A CA 404 1_555 N O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc30 F CA CA . A CA 405 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XYR 
_atom_sites.fract_transf_matrix[1][1]    0.011577 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 401 1 CA CA . 
C 2 CA A 1 402 2 CA CA . 
D 2 CA A 1 403 3 CA CA . 
E 2 CA A 1 404 4 CA CA . 
F 2 CA A 1 405 5 CA CA . 
G 3 GOL A 1 406 1 GOL GOL . 
H 3 GOL A 1 407 2 GOL GOL . 
I 3 GOL A 1 408 3 GOL GOL . 
J 3 GOL A 1 409 4 GOL GOL . 
K 3 GOL A 1 410 5 GOL GOL . 
L 4 CL A 1 411 1 CL CL . 
M 4 CL A 1 412 2 CL CL . 
N 5 HOH A 1 502 128 HOH HOH . 
N 5 HOH A 2 503 160 HOH HOH . 
N 5 HOH A 3 504 171 HOH HOH . 
N 5 HOH A 4 505 79 HOH HOH . 
N 5 HOH A 5 507 68 HOH HOH . 
N 5 HOH A 6 508 64 HOH HOH . 
N 5 HOH A 7 509 50 HOH HOH . 
N 5 HOH A 8 510 41 HOH HOH . 
N 5 HOH A 9 511 17 HOH HOH . 
N 5 HOH A 10 512 27 HOH HOH . 
N 5 HOH A 11 513 129 HOH HOH . 
N 5 HOH A 12 514 13 HOH HOH . 
N 5 HOH A 13 515 52 HOH HOH . 
N 5 HOH A 14 516 22 HOH HOH . 
N 5 HOH A 15 517 94 HOH HOH . 
N 5 HOH A 16 518 81 HOH HOH . 
N 5 HOH A 17 519 83 HOH HOH . 
N 5 HOH A 18 520 3 HOH HOH . 
N 5 HOH A 19 521 28 HOH HOH . 
N 5 HOH A 20 522 14 HOH HOH . 
N 5 HOH A 21 523 163 HOH HOH . 
N 5 HOH A 22 524 99 HOH HOH . 
N 5 HOH A 23 525 77 HOH HOH . 
N 5 HOH A 24 526 8 HOH HOH . 
N 5 HOH A 25 527 141 HOH HOH . 
N 5 HOH A 26 528 44 HOH HOH . 
N 5 HOH A 27 529 33 HOH HOH . 
N 5 HOH A 28 530 53 HOH HOH . 
N 5 HOH A 29 531 10 HOH HOH . 
N 5 HOH A 30 532 7 HOH HOH . 
N 5 HOH A 31 533 11 HOH HOH . 
N 5 HOH A 32 534 34 HOH HOH . 
N 5 HOH A 33 535 6 HOH HOH . 
N 5 HOH A 34 536 93 HOH HOH . 
N 5 HOH A 35 537 1 HOH HOH . 
N 5 HOH A 36 538 47 HOH HOH . 
N 5 HOH A 37 539 25 HOH HOH . 
N 5 HOH A 38 540 24 HOH HOH . 
N 5 HOH A 39 541 132 HOH HOH . 
N 5 HOH A 40 542 124 HOH HOH . 
N 5 HOH A 41 543 60 HOH HOH . 
N 5 HOH A 42 544 175 HOH HOH . 
N 5 HOH A 43 545 63 HOH HOH . 
N 5 HOH A 44 546 4 HOH HOH . 
N 5 HOH A 45 547 18 HOH HOH . 
N 5 HOH A 46 548 51 HOH HOH . 
N 5 HOH A 47 549 26 HOH HOH . 
N 5 HOH A 48 550 19 HOH HOH . 
N 5 HOH A 49 551 23 HOH HOH . 
N 5 HOH A 50 552 15 HOH HOH . 
N 5 HOH A 51 553 65 HOH HOH . 
N 5 HOH A 52 554 76 HOH HOH . 
N 5 HOH A 53 555 29 HOH HOH . 
N 5 HOH A 54 556 146 HOH HOH . 
N 5 HOH A 55 557 147 HOH HOH . 
N 5 HOH A 56 558 58 HOH HOH . 
N 5 HOH A 57 559 5 HOH HOH . 
N 5 HOH A 58 560 35 HOH HOH . 
N 5 HOH A 59 561 36 HOH HOH . 
N 5 HOH A 60 562 71 HOH HOH . 
N 5 HOH A 61 563 91 HOH HOH . 
N 5 HOH A 62 564 136 HOH HOH . 
N 5 HOH A 63 565 43 HOH HOH . 
N 5 HOH A 64 566 87 HOH HOH . 
N 5 HOH A 65 567 55 HOH HOH . 
N 5 HOH A 66 568 20 HOH HOH . 
N 5 HOH A 67 569 21 HOH HOH . 
N 5 HOH A 68 570 84 HOH HOH . 
N 5 HOH A 69 571 101 HOH HOH . 
N 5 HOH A 70 572 57 HOH HOH . 
N 5 HOH A 71 573 92 HOH HOH . 
N 5 HOH A 72 574 80 HOH HOH . 
N 5 HOH A 73 575 67 HOH HOH . 
N 5 HOH A 74 576 16 HOH HOH . 
N 5 HOH A 75 577 164 HOH HOH . 
N 5 HOH A 76 578 78 HOH HOH . 
N 5 HOH A 77 579 173 HOH HOH . 
N 5 HOH A 78 580 37 HOH HOH . 
N 5 HOH A 79 581 100 HOH HOH . 
N 5 HOH A 80 582 38 HOH HOH . 
N 5 HOH A 81 583 2 HOH HOH . 
N 5 HOH A 82 584 40 HOH HOH . 
N 5 HOH A 83 585 120 HOH HOH . 
N 5 HOH A 84 586 46 HOH HOH . 
N 5 HOH A 85 587 48 HOH HOH . 
N 5 HOH A 86 588 45 HOH HOH . 
N 5 HOH A 87 589 105 HOH HOH . 
N 5 HOH A 88 590 152 HOH HOH . 
N 5 HOH A 89 592 115 HOH HOH . 
N 5 HOH A 90 593 131 HOH HOH . 
N 5 HOH A 91 594 32 HOH HOH . 
N 5 HOH A 92 595 90 HOH HOH . 
N 5 HOH A 93 596 31 HOH HOH . 
N 5 HOH A 94 597 98 HOH HOH . 
N 5 HOH A 95 598 62 HOH HOH . 
N 5 HOH A 96 599 118 HOH HOH . 
N 5 HOH A 97 600 70 HOH HOH . 
N 5 HOH A 98 601 12 HOH HOH . 
N 5 HOH A 99 602 103 HOH HOH . 
N 5 HOH A 100 603 86 HOH HOH . 
N 5 HOH A 101 604 117 HOH HOH . 
N 5 HOH A 102 605 54 HOH HOH . 
N 5 HOH A 103 606 30 HOH HOH . 
N 5 HOH A 104 607 85 HOH HOH . 
N 5 HOH A 105 608 42 HOH HOH . 
N 5 HOH A 106 609 39 HOH HOH . 
N 5 HOH A 107 610 162 HOH HOH . 
N 5 HOH A 108 611 170 HOH HOH . 
N 5 HOH A 109 612 125 HOH HOH . 
N 5 HOH A 110 613 133 HOH HOH . 
N 5 HOH A 111 614 75 HOH HOH . 
N 5 HOH A 112 615 142 HOH HOH . 
N 5 HOH A 113 616 161 HOH HOH . 
N 5 HOH A 114 617 143 HOH HOH . 
N 5 HOH A 115 618 145 HOH HOH . 
N 5 HOH A 116 619 140 HOH HOH . 
N 5 HOH A 117 620 97 HOH HOH . 
N 5 HOH A 118 621 123 HOH HOH . 
N 5 HOH A 119 622 56 HOH HOH . 
N 5 HOH A 120 623 121 HOH HOH . 
N 5 HOH A 121 624 49 HOH HOH . 
N 5 HOH A 122 625 73 HOH HOH . 
N 5 HOH A 123 626 102 HOH HOH . 
N 5 HOH A 124 627 61 HOH HOH . 
N 5 HOH A 125 628 116 HOH HOH . 
N 5 HOH A 126 629 72 HOH HOH . 
N 5 HOH A 127 630 169 HOH HOH . 
N 5 HOH A 128 631 95 HOH HOH . 
N 5 HOH A 129 632 89 HOH HOH . 
N 5 HOH A 130 633 69 HOH HOH . 
N 5 HOH A 131 634 59 HOH HOH . 
N 5 HOH A 132 635 112 HOH HOH . 
N 5 HOH A 133 636 66 HOH HOH . 
N 5 HOH A 134 637 82 HOH HOH . 
N 5 HOH A 135 638 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.342 
_atom_site.Cartn_y               18 
_atom_site.Cartn_z               13.967 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#