data_6XYU # _model_server_result.job_id Ta6iFazyYoo31d1T9AkSZg _model_server_result.datetime_utc '2024-11-08 13:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6XYU # _exptl.entry_id 6XYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.283 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(3-IODOBENZYLAMINO)-1,2,3,4-TETRAHYDROACRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XYU _cell.length_a 94.91 _cell.length_b 94.91 _cell.length_c 160.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 94.91 94.91 80.02 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 991 NAG 2 n B NAG 2 B 2 NAG A 992 NAG 2 n B BMA 3 B 3 BMA A 993 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 292 A CYS 292 1_555 A SG CYS 307 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf3 A SG CYS 442 A CYS 442 1_555 A SG CYS 560 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale1 A CB SER 238 A SER 238 1_555 D I IOD . A IOD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? covale ? covale2 A ND2 ASN 493 A ASN 493 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C20 H19 I N2' _chem_comp.formula_weight 414.283 _chem_comp.id I40 _chem_comp.mon_nstd_flag . _chem_comp.name 9-(3-IODOBENZYLAMINO)-1,2,3,4-TETRAHYDROACRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I40 sing 176 n n C1 C10 I40 sing 177 n n C1 H12 I40 sing 178 n n C1 H11 I40 sing 179 n n C2 C3 I40 sing 180 n n C2 H22 I40 sing 181 n n C2 H21 I40 sing 182 n n C3 C4 I40 sing 183 n n C3 H32 I40 sing 184 n n C3 H31 I40 sing 185 n n C4 C11 I40 sing 186 n n C4 H42 I40 sing 187 n n C4 H41 I40 sing 188 n n C5 C11 I40 doub 189 n y C5 C12 I40 sing 190 n y C5 N2 I40 sing 191 n n C6 C7 I40 doub 192 n y C6 C12 I40 sing 193 n y C6 H6 I40 sing 194 n n C7 C8 I40 sing 195 n y C7 H7 I40 sing 196 n n C8 C9 I40 doub 197 n y C8 H8 I40 sing 198 n n C9 C13 I40 sing 199 n y C9 H9 I40 sing 200 n n N1 C10 I40 doub 201 n y N1 C13 I40 sing 202 n y C10 C11 I40 sing 203 n y C12 C13 I40 doub 204 n y N2 C14 I40 sing 205 n n N2 H2N1 I40 sing 206 n n I1 C17 I40 sing 207 n n C14 C15 I40 sing 208 n n C14 H142 I40 sing 209 n n C14 H141 I40 sing 210 n n C15 C16 I40 doub 211 n y C15 C20 I40 sing 212 n y C16 C17 I40 sing 213 n y C16 H16 I40 sing 214 n n C17 C18 I40 doub 215 n y C18 C19 I40 sing 216 n y C18 H18 I40 sing 217 n n C19 C20 I40 doub 218 n y C19 H19 I40 sing 219 n n C20 H20 I40 sing 220 n n # _atom_sites.entry_id 6XYU _atom_sites.fract_transf_matrix[1][1] 0.010536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 I40 A 1 601 997 I40 I40 . D 4 IOD A 1 602 998 IOD IDO . E 5 HOH A 1 701 128 HOH HOH . E 5 HOH A 2 702 53 HOH HOH . E 5 HOH A 3 703 84 HOH HOH . E 5 HOH A 4 704 49 HOH HOH . E 5 HOH A 5 705 146 HOH HOH . E 5 HOH A 6 706 75 HOH HOH . E 5 HOH A 7 707 99 HOH HOH . E 5 HOH A 8 708 144 HOH HOH . E 5 HOH A 9 709 35 HOH HOH . E 5 HOH A 10 710 37 HOH HOH . E 5 HOH A 11 711 92 HOH HOH . E 5 HOH A 12 712 137 HOH HOH . E 5 HOH A 13 713 50 HOH HOH . E 5 HOH A 14 714 68 HOH HOH . E 5 HOH A 15 715 13 HOH HOH . E 5 HOH A 16 716 97 HOH HOH . E 5 HOH A 17 717 116 HOH HOH . E 5 HOH A 18 718 134 HOH HOH . E 5 HOH A 19 719 40 HOH HOH . E 5 HOH A 20 720 95 HOH HOH . E 5 HOH A 21 721 23 HOH HOH . E 5 HOH A 22 722 109 HOH HOH . E 5 HOH A 23 723 120 HOH HOH . E 5 HOH A 24 724 44 HOH HOH . E 5 HOH A 25 725 108 HOH HOH . E 5 HOH A 26 726 57 HOH HOH . E 5 HOH A 27 727 59 HOH HOH . E 5 HOH A 28 728 63 HOH HOH . E 5 HOH A 29 729 121 HOH HOH . E 5 HOH A 30 730 5 HOH HOH . E 5 HOH A 31 731 41 HOH HOH . E 5 HOH A 32 732 62 HOH HOH . E 5 HOH A 33 733 117 HOH HOH . E 5 HOH A 34 734 14 HOH HOH . E 5 HOH A 35 735 7 HOH HOH . E 5 HOH A 36 736 105 HOH HOH . E 5 HOH A 37 737 33 HOH HOH . E 5 HOH A 38 738 76 HOH HOH . E 5 HOH A 39 739 91 HOH HOH . E 5 HOH A 40 740 6 HOH HOH . E 5 HOH A 41 741 52 HOH HOH . E 5 HOH A 42 742 103 HOH HOH . E 5 HOH A 43 743 64 HOH HOH . E 5 HOH A 44 744 43 HOH HOH . E 5 HOH A 45 745 70 HOH HOH . E 5 HOH A 46 746 112 HOH HOH . E 5 HOH A 47 747 24 HOH HOH . E 5 HOH A 48 748 125 HOH HOH . E 5 HOH A 49 749 72 HOH HOH . E 5 HOH A 50 750 111 HOH HOH . E 5 HOH A 51 751 71 HOH HOH . E 5 HOH A 52 752 152 HOH HOH . E 5 HOH A 53 753 96 HOH HOH . E 5 HOH A 54 754 25 HOH HOH . E 5 HOH A 55 755 138 HOH HOH . E 5 HOH A 56 756 154 HOH HOH . E 5 HOH A 57 757 115 HOH HOH . E 5 HOH A 58 758 133 HOH HOH . E 5 HOH A 59 759 143 HOH HOH . E 5 HOH A 60 760 118 HOH HOH . E 5 HOH A 61 761 139 HOH HOH . E 5 HOH A 62 762 102 HOH HOH . E 5 HOH A 63 763 30 HOH HOH . E 5 HOH A 64 764 153 HOH HOH . E 5 HOH A 65 765 4 HOH HOH . E 5 HOH A 66 766 47 HOH HOH . E 5 HOH A 67 767 113 HOH HOH . E 5 HOH A 68 768 38 HOH HOH . E 5 HOH A 69 769 65 HOH HOH . E 5 HOH A 70 770 48 HOH HOH . E 5 HOH A 71 771 100 HOH HOH . E 5 HOH A 72 772 142 HOH HOH . E 5 HOH A 73 773 140 HOH HOH . E 5 HOH A 74 774 141 HOH HOH . E 5 HOH A 75 775 151 HOH HOH . E 5 HOH A 76 776 3 HOH HOH . E 5 HOH A 77 777 122 HOH HOH . E 5 HOH A 78 778 66 HOH HOH . E 5 HOH A 79 779 39 HOH HOH . E 5 HOH A 80 780 83 HOH HOH . E 5 HOH A 81 781 149 HOH HOH . E 5 HOH A 82 782 42 HOH HOH . E 5 HOH A 83 783 1 HOH HOH . E 5 HOH A 84 784 20 HOH HOH . E 5 HOH A 85 785 106 HOH HOH . E 5 HOH A 86 786 2 HOH HOH . E 5 HOH A 87 787 135 HOH HOH . E 5 HOH A 88 788 126 HOH HOH . E 5 HOH A 89 789 79 HOH HOH . E 5 HOH A 90 790 74 HOH HOH . E 5 HOH A 91 791 110 HOH HOH . E 5 HOH A 92 792 107 HOH HOH . E 5 HOH A 93 793 129 HOH HOH . E 5 HOH A 94 794 9 HOH HOH . E 5 HOH A 95 795 130 HOH HOH . E 5 HOH A 96 796 77 HOH HOH . E 5 HOH A 97 797 22 HOH HOH . E 5 HOH A 98 798 101 HOH HOH . E 5 HOH A 99 799 104 HOH HOH . E 5 HOH A 100 800 131 HOH HOH . E 5 HOH A 101 801 56 HOH HOH . E 5 HOH A 102 802 136 HOH HOH . E 5 HOH A 103 803 94 HOH HOH . E 5 HOH A 104 804 90 HOH HOH . E 5 HOH A 105 805 19 HOH HOH . E 5 HOH A 106 806 18 HOH HOH . E 5 HOH A 107 807 11 HOH HOH . E 5 HOH A 108 808 55 HOH HOH . E 5 HOH A 109 809 69 HOH HOH . E 5 HOH A 110 810 114 HOH HOH . E 5 HOH A 111 811 80 HOH HOH . E 5 HOH A 112 812 60 HOH HOH . E 5 HOH A 113 813 132 HOH HOH . E 5 HOH A 114 814 88 HOH HOH . E 5 HOH A 115 815 46 HOH HOH . E 5 HOH A 116 816 34 HOH HOH . E 5 HOH A 117 817 61 HOH HOH . E 5 HOH A 118 818 127 HOH HOH . E 5 HOH A 119 819 89 HOH HOH . E 5 HOH A 120 820 124 HOH HOH . E 5 HOH A 121 821 147 HOH HOH . E 5 HOH A 122 822 12 HOH HOH . E 5 HOH A 123 823 123 HOH HOH . E 5 HOH A 124 824 86 HOH HOH . E 5 HOH A 125 825 26 HOH HOH . E 5 HOH A 126 826 82 HOH HOH . E 5 HOH A 127 827 31 HOH HOH . E 5 HOH A 128 828 45 HOH HOH . E 5 HOH A 129 829 85 HOH HOH . E 5 HOH A 130 830 98 HOH HOH . E 5 HOH A 131 831 58 HOH HOH . E 5 HOH A 132 832 17 HOH HOH . E 5 HOH A 133 833 119 HOH HOH . E 5 HOH A 134 834 21 HOH HOH . E 5 HOH A 135 835 145 HOH HOH . E 5 HOH A 136 836 73 HOH HOH . E 5 HOH A 137 837 93 HOH HOH . E 5 HOH A 138 838 150 HOH HOH . E 5 HOH A 139 839 8 HOH HOH . E 5 HOH A 140 840 67 HOH HOH . E 5 HOH A 141 841 54 HOH HOH . E 5 HOH A 142 842 81 HOH HOH . E 5 HOH A 143 843 148 HOH HOH . E 5 HOH A 144 844 27 HOH HOH . E 5 HOH A 145 845 28 HOH HOH . E 5 HOH A 146 846 32 HOH HOH . E 5 HOH A 147 847 15 HOH HOH . E 5 HOH A 148 848 51 HOH HOH . E 5 HOH A 149 849 36 HOH HOH . E 5 HOH A 150 850 78 HOH HOH . E 5 HOH A 151 851 87 HOH HOH . E 5 HOH A 152 852 16 HOH HOH . E 5 HOH A 153 853 29 HOH HOH . E 5 HOH A 154 854 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I40 . . . C 3 31.743 63.657 9.619 1 71.78 ? C1 I40 601 A 1 HETATM 2 C C2 I40 . . . C 3 30.316 64.022 9.022 1 68.99 ? C2 I40 601 A 1 HETATM 3 C C3 I40 . . . C 3 30.108 65.491 8.678 1 67.52 ? C3 I40 601 A 1 HETATM 4 C C4 I40 . . . C 3 31.386 66.181 8.088 1 66.46 ? C4 I40 601 A 1 HETATM 5 C C5 I40 . . . C 3 33.651 67.08 8.975 1 63.13 ? C5 I40 601 A 1 HETATM 6 C C6 I40 . . . C 3 35.921 67.74 9.981 1 72.77 ? C6 I40 601 A 1 HETATM 7 C C7 I40 . . . C 3 37.037 67.436 10.824 1 85.79 ? C7 I40 601 A 1 HETATM 8 C C8 I40 . . . C 3 37.104 66.2 11.507 1 84.69 ? C8 I40 601 A 1 HETATM 9 C C9 I40 . . . C 3 36.05 65.235 11.371 1 76.04 ? C9 I40 601 A 1 HETATM 10 N N1 I40 . . . C 3 33.924 64.561 10.449 1 66.69 ? N1 I40 601 A 1 HETATM 11 C C10 I40 . . . C 3 32.818 64.818 9.653 1 72 ? C10 I40 601 A 1 HETATM 12 C C11 I40 . . . C 3 32.655 66.035 8.915 1 66.27 ? C11 I40 601 A 1 HETATM 13 C C12 I40 . . . C 3 34.845 66.767 9.848 1 67.21 ? C12 I40 601 A 1 HETATM 14 C C13 I40 . . . C 3 34.926 65.572 10.523 1 68.56 ? C13 I40 601 A 1 HETATM 15 N N2 I40 . . . C 3 33.509 68.349 8.227 1 62.5 ? N2 I40 601 A 1 HETATM 16 I I1 I40 . . . C 3 28.753 70.683 9.976 0.67 108.55 ? I1 I40 601 A 1 HETATM 17 C C14 I40 . . . C 3 33.999 69.724 8.625 1 68.24 ? C14 I40 601 A 1 HETATM 18 C C15 I40 . . . C 3 33.067 70.436 9.652 1 79 ? C15 I40 601 A 1 HETATM 19 C C16 I40 . . . C 3 31.681 70.307 9.467 1 90.71 ? C16 I40 601 A 1 HETATM 20 C C17 I40 . . . C 3 30.804 70.935 10.35 1 97.33 ? C17 I40 601 A 1 HETATM 21 C C18 I40 . . . C 3 31.253 71.713 11.45 1 85.92 ? C18 I40 601 A 1 HETATM 22 C C19 I40 . . . C 3 32.654 71.846 11.639 1 70.55 ? C19 I40 601 A 1 HETATM 23 C C20 I40 . . . C 3 33.57 71.212 10.747 1 69.75 ? C20 I40 601 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #