data_6XYU # _model_server_result.job_id a9v7Vk71Jr4RV1Xd9U0FtQ _model_server_result.datetime_utc '2024-11-08 13:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6XYU # _exptl.entry_id 6XYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XYU _cell.length_a 94.91 _cell.length_b 94.91 _cell.length_c 160.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 94.91 94.91 80.02 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 991 NAG 2 n B NAG 2 B 2 NAG A 992 NAG 2 n B BMA 3 B 3 BMA A 993 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 292 A CYS 292 1_555 A SG CYS 307 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf3 A SG CYS 442 A CYS 442 1_555 A SG CYS 560 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale1 A CB SER 238 A SER 238 1_555 D I IOD . A IOD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? covale ? covale2 A ND2 ASN 493 A ASN 493 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XYU _atom_sites.fract_transf_matrix[1][1] 0.010536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 I40 A 1 601 997 I40 I40 . D 4 IOD A 1 602 998 IOD IDO . E 5 HOH A 1 701 128 HOH HOH . E 5 HOH A 2 702 53 HOH HOH . E 5 HOH A 3 703 84 HOH HOH . E 5 HOH A 4 704 49 HOH HOH . E 5 HOH A 5 705 146 HOH HOH . E 5 HOH A 6 706 75 HOH HOH . E 5 HOH A 7 707 99 HOH HOH . E 5 HOH A 8 708 144 HOH HOH . E 5 HOH A 9 709 35 HOH HOH . E 5 HOH A 10 710 37 HOH HOH . E 5 HOH A 11 711 92 HOH HOH . E 5 HOH A 12 712 137 HOH HOH . E 5 HOH A 13 713 50 HOH HOH . E 5 HOH A 14 714 68 HOH HOH . E 5 HOH A 15 715 13 HOH HOH . E 5 HOH A 16 716 97 HOH HOH . E 5 HOH A 17 717 116 HOH HOH . E 5 HOH A 18 718 134 HOH HOH . E 5 HOH A 19 719 40 HOH HOH . E 5 HOH A 20 720 95 HOH HOH . E 5 HOH A 21 721 23 HOH HOH . E 5 HOH A 22 722 109 HOH HOH . E 5 HOH A 23 723 120 HOH HOH . E 5 HOH A 24 724 44 HOH HOH . E 5 HOH A 25 725 108 HOH HOH . E 5 HOH A 26 726 57 HOH HOH . E 5 HOH A 27 727 59 HOH HOH . E 5 HOH A 28 728 63 HOH HOH . E 5 HOH A 29 729 121 HOH HOH . E 5 HOH A 30 730 5 HOH HOH . E 5 HOH A 31 731 41 HOH HOH . E 5 HOH A 32 732 62 HOH HOH . E 5 HOH A 33 733 117 HOH HOH . E 5 HOH A 34 734 14 HOH HOH . E 5 HOH A 35 735 7 HOH HOH . E 5 HOH A 36 736 105 HOH HOH . E 5 HOH A 37 737 33 HOH HOH . E 5 HOH A 38 738 76 HOH HOH . E 5 HOH A 39 739 91 HOH HOH . E 5 HOH A 40 740 6 HOH HOH . E 5 HOH A 41 741 52 HOH HOH . E 5 HOH A 42 742 103 HOH HOH . E 5 HOH A 43 743 64 HOH HOH . E 5 HOH A 44 744 43 HOH HOH . E 5 HOH A 45 745 70 HOH HOH . E 5 HOH A 46 746 112 HOH HOH . E 5 HOH A 47 747 24 HOH HOH . E 5 HOH A 48 748 125 HOH HOH . E 5 HOH A 49 749 72 HOH HOH . E 5 HOH A 50 750 111 HOH HOH . E 5 HOH A 51 751 71 HOH HOH . E 5 HOH A 52 752 152 HOH HOH . E 5 HOH A 53 753 96 HOH HOH . E 5 HOH A 54 754 25 HOH HOH . E 5 HOH A 55 755 138 HOH HOH . E 5 HOH A 56 756 154 HOH HOH . E 5 HOH A 57 757 115 HOH HOH . E 5 HOH A 58 758 133 HOH HOH . E 5 HOH A 59 759 143 HOH HOH . E 5 HOH A 60 760 118 HOH HOH . E 5 HOH A 61 761 139 HOH HOH . E 5 HOH A 62 762 102 HOH HOH . E 5 HOH A 63 763 30 HOH HOH . E 5 HOH A 64 764 153 HOH HOH . E 5 HOH A 65 765 4 HOH HOH . E 5 HOH A 66 766 47 HOH HOH . E 5 HOH A 67 767 113 HOH HOH . E 5 HOH A 68 768 38 HOH HOH . E 5 HOH A 69 769 65 HOH HOH . E 5 HOH A 70 770 48 HOH HOH . E 5 HOH A 71 771 100 HOH HOH . E 5 HOH A 72 772 142 HOH HOH . E 5 HOH A 73 773 140 HOH HOH . E 5 HOH A 74 774 141 HOH HOH . E 5 HOH A 75 775 151 HOH HOH . E 5 HOH A 76 776 3 HOH HOH . E 5 HOH A 77 777 122 HOH HOH . E 5 HOH A 78 778 66 HOH HOH . E 5 HOH A 79 779 39 HOH HOH . E 5 HOH A 80 780 83 HOH HOH . E 5 HOH A 81 781 149 HOH HOH . E 5 HOH A 82 782 42 HOH HOH . E 5 HOH A 83 783 1 HOH HOH . E 5 HOH A 84 784 20 HOH HOH . E 5 HOH A 85 785 106 HOH HOH . E 5 HOH A 86 786 2 HOH HOH . E 5 HOH A 87 787 135 HOH HOH . E 5 HOH A 88 788 126 HOH HOH . E 5 HOH A 89 789 79 HOH HOH . E 5 HOH A 90 790 74 HOH HOH . E 5 HOH A 91 791 110 HOH HOH . E 5 HOH A 92 792 107 HOH HOH . E 5 HOH A 93 793 129 HOH HOH . E 5 HOH A 94 794 9 HOH HOH . E 5 HOH A 95 795 130 HOH HOH . E 5 HOH A 96 796 77 HOH HOH . E 5 HOH A 97 797 22 HOH HOH . E 5 HOH A 98 798 101 HOH HOH . E 5 HOH A 99 799 104 HOH HOH . E 5 HOH A 100 800 131 HOH HOH . E 5 HOH A 101 801 56 HOH HOH . E 5 HOH A 102 802 136 HOH HOH . E 5 HOH A 103 803 94 HOH HOH . E 5 HOH A 104 804 90 HOH HOH . E 5 HOH A 105 805 19 HOH HOH . E 5 HOH A 106 806 18 HOH HOH . E 5 HOH A 107 807 11 HOH HOH . E 5 HOH A 108 808 55 HOH HOH . E 5 HOH A 109 809 69 HOH HOH . E 5 HOH A 110 810 114 HOH HOH . E 5 HOH A 111 811 80 HOH HOH . E 5 HOH A 112 812 60 HOH HOH . E 5 HOH A 113 813 132 HOH HOH . E 5 HOH A 114 814 88 HOH HOH . E 5 HOH A 115 815 46 HOH HOH . E 5 HOH A 116 816 34 HOH HOH . E 5 HOH A 117 817 61 HOH HOH . E 5 HOH A 118 818 127 HOH HOH . E 5 HOH A 119 819 89 HOH HOH . E 5 HOH A 120 820 124 HOH HOH . E 5 HOH A 121 821 147 HOH HOH . E 5 HOH A 122 822 12 HOH HOH . E 5 HOH A 123 823 123 HOH HOH . E 5 HOH A 124 824 86 HOH HOH . E 5 HOH A 125 825 26 HOH HOH . E 5 HOH A 126 826 82 HOH HOH . E 5 HOH A 127 827 31 HOH HOH . E 5 HOH A 128 828 45 HOH HOH . E 5 HOH A 129 829 85 HOH HOH . E 5 HOH A 130 830 98 HOH HOH . E 5 HOH A 131 831 58 HOH HOH . E 5 HOH A 132 832 17 HOH HOH . E 5 HOH A 133 833 119 HOH HOH . E 5 HOH A 134 834 21 HOH HOH . E 5 HOH A 135 835 145 HOH HOH . E 5 HOH A 136 836 73 HOH HOH . E 5 HOH A 137 837 93 HOH HOH . E 5 HOH A 138 838 150 HOH HOH . E 5 HOH A 139 839 8 HOH HOH . E 5 HOH A 140 840 67 HOH HOH . E 5 HOH A 141 841 54 HOH HOH . E 5 HOH A 142 842 81 HOH HOH . E 5 HOH A 143 843 148 HOH HOH . E 5 HOH A 144 844 27 HOH HOH . E 5 HOH A 145 845 28 HOH HOH . E 5 HOH A 146 846 32 HOH HOH . E 5 HOH A 147 847 15 HOH HOH . E 5 HOH A 148 848 51 HOH HOH . E 5 HOH A 149 849 36 HOH HOH . E 5 HOH A 150 850 78 HOH HOH . E 5 HOH A 151 851 87 HOH HOH . E 5 HOH A 152 852 16 HOH HOH . E 5 HOH A 153 853 29 HOH HOH . E 5 HOH A 154 854 10 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.638 _atom_site.Cartn_y 66.275 _atom_site.Cartn_z 11.981 _atom_site.occupancy 0.92 _atom_site.B_iso_or_equiv 88.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #