data_6XZ0 # _model_server_result.job_id DlZ1l5H-LOeoiuSgeR_Bcw _model_server_result.datetime_utc '2024-11-14 17:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6XZ0 # _exptl.entry_id 6XZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPECTINOMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XZ0 _cell.length_a 99.561 _cell.length_b 99.561 _cell.length_c 61.327 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H24 N2 O7' _chem_comp.formula_weight 332.35 _chem_comp.id SCM _chem_comp.mon_nstd_flag . _chem_comp.name SPECTINOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ACTINOSPECTACIN;ESPECTINOMICINA;CHX-3101 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 SCM sing 275 n n O1 C6 SCM sing 276 n n C2 C2M SCM sing 277 n n C2 C3 SCM sing 278 n n C2 H2 SCM sing 279 n n C2M H2M1 SCM sing 280 n n C2M H2M2 SCM sing 281 n n C2M H2M3 SCM sing 282 n n C3 C4 SCM sing 283 n n C3 H31 SCM sing 284 n n C3 H32 SCM sing 285 n n C4 O4 SCM doub 286 n n C4 C5 SCM sing 287 n n C5 O5 SCM sing 288 n n C5 C6 SCM sing 289 n n C5 O1B SCM sing 290 n n O5 HO5 SCM sing 291 n n C6 O2B SCM sing 292 n n C6 H6 SCM sing 293 n n O1B C7 SCM sing 294 n n O2B C12 SCM sing 295 n n C7 C8 SCM sing 296 n n C7 C12 SCM sing 297 n n C7 H7 SCM sing 298 n n C8 N8 SCM sing 299 n n C8 C9 SCM sing 300 n n C8 H8 SCM sing 301 n n N8 C8M SCM sing 302 n n N8 HN8 SCM sing 303 n n C8M H8M1 SCM sing 304 n n C8M H8M2 SCM sing 305 n n C8M H8M3 SCM sing 306 n n C9 O9 SCM sing 307 n n C9 C10 SCM sing 308 n n C9 H9 SCM sing 309 n n O9 HO9 SCM sing 310 n n C10 N10 SCM sing 311 n n C10 C11 SCM sing 312 n n C10 H10 SCM sing 313 n n N10 C1M SCM sing 314 n n N10 HN1 SCM sing 315 n n C1M H1M1 SCM sing 316 n n C1M H1M2 SCM sing 317 n n C1M H1M3 SCM sing 318 n n C11 O11 SCM sing 319 n n C11 C12 SCM sing 320 n n C11 H11 SCM sing 321 n n O11 HO1 SCM sing 322 n n C12 H12 SCM sing 323 n n # _atom_sites.entry_id 6XZ0 _atom_sites.fract_transf_matrix[1][1] 0.010044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SCM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id SCM _pdbx_nonpoly_scheme.auth_mon_id SCM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 SCM . . . B 2 -26.016 -32.156 -26.721 1 72.6 ? O1 SCM 501 A 1 HETATM 2 C C2 SCM . . . B 2 -27.382 -31.783 -26.982 1 66.24 ? C2 SCM 501 A 1 HETATM 3 C C2M SCM . . . B 2 -27.353 -30.389 -27.554 1 60.75 ? C2M SCM 501 A 1 HETATM 4 C C3 SCM . . . B 2 -28.173 -31.892 -25.695 1 77.25 ? C3 SCM 501 A 1 HETATM 5 C C4 SCM . . . B 2 -28.019 -33.267 -25.101 1 73.77 ? C4 SCM 501 A 1 HETATM 6 O O4 SCM . . . B 2 -28.969 -33.905 -24.712 1 76.54 ? O4 SCM 501 A 1 HETATM 7 C C5 SCM . . . B 2 -26.566 -33.788 -25.046 1 77.85 ? C5 SCM 501 A 1 HETATM 8 O O5 SCM . . . B 2 -26.563 -35.162 -24.837 1 86.76 ? O5 SCM 501 A 1 HETATM 9 C C6 SCM . . . B 2 -25.855 -33.513 -26.378 1 75.63 ? C6 SCM 501 A 1 HETATM 10 O O1B SCM . . . B 2 -25.956 -33.148 -23.937 1 67.39 ? O1B SCM 501 A 1 HETATM 11 O O2B SCM . . . B 2 -24.471 -33.716 -26.252 1 71.14 ? O2B SCM 501 A 1 HETATM 12 C C7 SCM . . . B 2 -24.532 -33.336 -23.887 1 70.8 ? C7 SCM 501 A 1 HETATM 13 C C8 SCM . . . B 2 -23.973 -32.499 -22.738 1 70.23 ? C8 SCM 501 A 1 HETATM 14 N N8 SCM . . . B 2 -24.433 -32.998 -21.437 1 77.16 ? N8 SCM 501 A 1 HETATM 15 C C8M SCM . . . B 2 -25.581 -32.272 -20.899 1 71.84 ? C8M SCM 501 A 1 HETATM 16 C C9 SCM . . . B 2 -22.446 -32.538 -22.74 1 69.83 ? C9 SCM 501 A 1 HETATM 17 O O9 SCM . . . B 2 -22.006 -33.849 -22.404 1 79.64 ? O9 SCM 501 A 1 HETATM 18 C C10 SCM . . . B 2 -21.878 -32.11 -24.094 1 71.62 ? C10 SCM 501 A 1 HETATM 19 N N10 SCM . . . B 2 -20.409 -32.095 -24.002 1 61.54 ? N10 SCM 501 A 1 HETATM 20 C C1M SCM . . . B 2 -19.77 -33.338 -24.434 1 54.64 ? C1M SCM 501 A 1 HETATM 21 C C11 SCM . . . B 2 -22.415 -32.996 -25.217 1 69.49 ? C11 SCM 501 A 1 HETATM 22 O O11 SCM . . . B 2 -21.92 -32.543 -26.472 1 62.21 ? O11 SCM 501 A 1 HETATM 23 C C12 SCM . . . B 2 -23.932 -32.891 -25.21 1 68.74 ? C12 SCM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #