data_6XZ1
#
_model_server_result.job_id            jXujrvfQPd522hZlkG-oYw 
_model_server_result.datetime_utc      '2024-11-09 02:31:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    6XZ1 
#
_exptl.entry_id    6XZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              57.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            prop-2-en-1-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          129.61 
_cell.angle_gamma         90 
_cell.entry_id            6XZ1 
_cell.length_a            140.552 
_cell.length_b            142.171 
_cell.length_c            103.512 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 194 A CYS 4184 1_555 C SG CYS 194 B CYS 4184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A SG CYS 351 A CYS 4341 1_555 G C2 AYE . C AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 B C GLY 75 C GLY 75 1_555 G N1 AYE . C AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 C SG CYS 351 B CYS 4341 1_555 J C2 AYE . D AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale4 D C GLY 75 D GLY 75 1_555 J N1 AYE . D AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C3 H7 N' 
_chem_comp.formula_weight    57.094 
_chem_comp.id                AYE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              prop-2-en-1-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ALLYLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 AYE doub 70 n n 
C2 C1 AYE sing 71 n n 
C1 N1 AYE sing 72 n n 
C2 H2 AYE sing 73 n n 
C3 H3 AYE sing 74 n n 
C3 H3A AYE sing 75 n n 
C1 H1 AYE sing 76 n n 
C1 H1A AYE sing 77 n n 
N1 HN1 AYE sing 78 n n 
N1 HN1A AYE sing 79 n n 
#
_atom_sites.entry_id                     6XZ1 
_atom_sites.fract_transf_matrix[1][1]    0.007115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005887 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012539 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PO4 A 1 4401 4 PO4 PO4 . 
F 3 PO4 A 1 4402 12 PO4 PO4 . 
G 4 AYE C 1 101 76 AYE AYE . 
H 3 PO4 B 1 4401 2 PO4 PO4 . 
I 3 PO4 B 1 4402 5 PO4 PO4 . 
J 4 AYE D 1 101 76 AYE AYE . 
K 3 PO4 D 1 102 13 PO4 PO4 . 
L 5 HOH A 1 4501 63 HOH HOH . 
L 5 HOH A 2 4502 221 HOH HOH . 
L 5 HOH A 3 4503 208 HOH HOH . 
L 5 HOH A 4 4504 181 HOH HOH . 
L 5 HOH A 5 4505 148 HOH HOH . 
L 5 HOH A 6 4506 211 HOH HOH . 
L 5 HOH A 7 4507 3 HOH HOH . 
L 5 HOH A 8 4508 55 HOH HOH . 
L 5 HOH A 9 4509 8 HOH HOH . 
L 5 HOH A 10 4510 54 HOH HOH . 
L 5 HOH A 11 4511 93 HOH HOH . 
L 5 HOH A 12 4512 27 HOH HOH . 
L 5 HOH A 13 4513 52 HOH HOH . 
L 5 HOH A 14 4514 84 HOH HOH . 
L 5 HOH A 15 4515 61 HOH HOH . 
L 5 HOH A 16 4516 19 HOH HOH . 
L 5 HOH A 17 4517 58 HOH HOH . 
L 5 HOH A 18 4518 79 HOH HOH . 
L 5 HOH A 19 4519 30 HOH HOH . 
L 5 HOH A 20 4520 223 HOH HOH . 
L 5 HOH A 21 4521 31 HOH HOH . 
L 5 HOH A 22 4522 38 HOH HOH . 
L 5 HOH A 23 4523 22 HOH HOH . 
L 5 HOH A 24 4524 50 HOH HOH . 
L 5 HOH A 25 4525 102 HOH HOH . 
L 5 HOH A 26 4526 88 HOH HOH . 
L 5 HOH A 27 4527 1 HOH HOH . 
L 5 HOH A 28 4528 89 HOH HOH . 
L 5 HOH A 29 4529 51 HOH HOH . 
L 5 HOH A 30 4530 122 HOH HOH . 
L 5 HOH A 31 4531 49 HOH HOH . 
L 5 HOH A 32 4532 62 HOH HOH . 
L 5 HOH A 33 4533 129 HOH HOH . 
L 5 HOH A 34 4534 86 HOH HOH . 
L 5 HOH A 35 4535 12 HOH HOH . 
L 5 HOH A 36 4536 104 HOH HOH . 
L 5 HOH A 37 4537 47 HOH HOH . 
L 5 HOH A 38 4538 81 HOH HOH . 
L 5 HOH A 39 4539 205 HOH HOH . 
L 5 HOH A 40 4540 114 HOH HOH . 
L 5 HOH A 41 4541 59 HOH HOH . 
L 5 HOH A 42 4542 105 HOH HOH . 
L 5 HOH A 43 4543 82 HOH HOH . 
L 5 HOH A 44 4544 57 HOH HOH . 
L 5 HOH A 45 4545 224 HOH HOH . 
L 5 HOH A 46 4546 68 HOH HOH . 
L 5 HOH A 47 4547 44 HOH HOH . 
L 5 HOH A 48 4548 120 HOH HOH . 
L 5 HOH A 49 4549 213 HOH HOH . 
L 5 HOH A 50 4550 37 HOH HOH . 
L 5 HOH A 51 4551 28 HOH HOH . 
L 5 HOH A 52 4552 97 HOH HOH . 
L 5 HOH A 53 4553 200 HOH HOH . 
L 5 HOH A 54 4554 198 HOH HOH . 
L 5 HOH A 55 4555 216 HOH HOH . 
L 5 HOH A 56 4556 152 HOH HOH . 
L 5 HOH A 57 4557 124 HOH HOH . 
L 5 HOH A 58 4558 217 HOH HOH . 
L 5 HOH A 59 4559 209 HOH HOH . 
L 5 HOH A 60 4560 137 HOH HOH . 
M 5 HOH C 1 201 64 HOH HOH . 
M 5 HOH C 2 202 34 HOH HOH . 
M 5 HOH C 3 203 106 HOH HOH . 
M 5 HOH C 4 204 2 HOH HOH . 
M 5 HOH C 5 205 118 HOH HOH . 
M 5 HOH C 6 206 20 HOH HOH . 
M 5 HOH C 7 207 24 HOH HOH . 
M 5 HOH C 8 208 142 HOH HOH . 
M 5 HOH C 9 209 113 HOH HOH . 
M 5 HOH C 10 210 166 HOH HOH . 
M 5 HOH C 11 211 164 HOH HOH . 
N 5 HOH B 1 4501 83 HOH HOH . 
N 5 HOH B 2 4502 220 HOH HOH . 
N 5 HOH B 3 4503 77 HOH HOH . 
N 5 HOH B 4 4504 78 HOH HOH . 
N 5 HOH B 5 4505 115 HOH HOH . 
N 5 HOH B 6 4506 26 HOH HOH . 
N 5 HOH B 7 4507 194 HOH HOH . 
N 5 HOH B 8 4508 85 HOH HOH . 
N 5 HOH B 9 4509 25 HOH HOH . 
N 5 HOH B 10 4510 10 HOH HOH . 
N 5 HOH B 11 4511 163 HOH HOH . 
N 5 HOH B 12 4512 18 HOH HOH . 
N 5 HOH B 13 4513 151 HOH HOH . 
N 5 HOH B 14 4514 90 HOH HOH . 
N 5 HOH B 15 4515 29 HOH HOH . 
N 5 HOH B 16 4516 11 HOH HOH . 
N 5 HOH B 17 4517 14 HOH HOH . 
N 5 HOH B 18 4518 60 HOH HOH . 
N 5 HOH B 19 4519 72 HOH HOH . 
N 5 HOH B 20 4520 6 HOH HOH . 
N 5 HOH B 21 4521 138 HOH HOH . 
N 5 HOH B 22 4522 67 HOH HOH . 
N 5 HOH B 23 4523 7 HOH HOH . 
N 5 HOH B 24 4524 40 HOH HOH . 
N 5 HOH B 25 4525 43 HOH HOH . 
N 5 HOH B 26 4526 161 HOH HOH . 
N 5 HOH B 27 4527 107 HOH HOH . 
N 5 HOH B 28 4528 66 HOH HOH . 
N 5 HOH B 29 4529 65 HOH HOH . 
N 5 HOH B 30 4530 119 HOH HOH . 
N 5 HOH B 31 4531 123 HOH HOH . 
N 5 HOH B 32 4532 144 HOH HOH . 
N 5 HOH B 33 4533 99 HOH HOH . 
N 5 HOH B 34 4534 112 HOH HOH . 
N 5 HOH B 35 4535 16 HOH HOH . 
N 5 HOH B 36 4536 109 HOH HOH . 
N 5 HOH B 37 4537 75 HOH HOH . 
N 5 HOH B 38 4538 69 HOH HOH . 
N 5 HOH B 39 4539 98 HOH HOH . 
N 5 HOH B 40 4540 33 HOH HOH . 
N 5 HOH B 41 4541 111 HOH HOH . 
N 5 HOH B 42 4542 45 HOH HOH . 
N 5 HOH B 43 4543 91 HOH HOH . 
N 5 HOH B 44 4544 74 HOH HOH . 
N 5 HOH B 45 4545 127 HOH HOH . 
N 5 HOH B 46 4546 46 HOH HOH . 
N 5 HOH B 47 4547 92 HOH HOH . 
N 5 HOH B 48 4548 36 HOH HOH . 
N 5 HOH B 49 4549 35 HOH HOH . 
N 5 HOH B 50 4550 42 HOH HOH . 
N 5 HOH B 51 4551 172 HOH HOH . 
N 5 HOH B 52 4552 128 HOH HOH . 
N 5 HOH B 53 4553 162 HOH HOH . 
N 5 HOH B 54 4554 39 HOH HOH . 
N 5 HOH B 55 4555 184 HOH HOH . 
N 5 HOH B 56 4556 132 HOH HOH . 
N 5 HOH B 57 4557 32 HOH HOH . 
N 5 HOH B 58 4558 133 HOH HOH . 
N 5 HOH B 59 4559 70 HOH HOH . 
N 5 HOH B 60 4560 87 HOH HOH . 
N 5 HOH B 61 4561 96 HOH HOH . 
N 5 HOH B 62 4562 182 HOH HOH . 
N 5 HOH B 63 4563 56 HOH HOH . 
N 5 HOH B 64 4564 206 HOH HOH . 
N 5 HOH B 65 4565 167 HOH HOH . 
N 5 HOH B 66 4566 41 HOH HOH . 
N 5 HOH B 67 4567 135 HOH HOH . 
N 5 HOH B 68 4568 131 HOH HOH . 
N 5 HOH B 69 4569 100 HOH HOH . 
N 5 HOH B 70 4570 23 HOH HOH . 
N 5 HOH B 71 4571 174 HOH HOH . 
N 5 HOH B 72 4572 147 HOH HOH . 
N 5 HOH B 73 4573 210 HOH HOH . 
N 5 HOH B 74 4574 126 HOH HOH . 
N 5 HOH B 75 4575 219 HOH HOH . 
N 5 HOH B 76 4576 139 HOH HOH . 
N 5 HOH B 77 4577 222 HOH HOH . 
N 5 HOH B 78 4578 203 HOH HOH . 
N 5 HOH B 79 4579 121 HOH HOH . 
N 5 HOH B 80 4580 15 HOH HOH . 
N 5 HOH B 81 4581 183 HOH HOH . 
N 5 HOH B 82 4582 136 HOH HOH . 
N 5 HOH B 83 4583 201 HOH HOH . 
O 5 HOH D 1 201 53 HOH HOH . 
O 5 HOH D 2 202 125 HOH HOH . 
O 5 HOH D 3 203 103 HOH HOH . 
O 5 HOH D 4 204 4 HOH HOH . 
O 5 HOH D 5 205 140 HOH HOH . 
O 5 HOH D 6 206 76 HOH HOH . 
O 5 HOH D 7 207 130 HOH HOH . 
O 5 HOH D 8 208 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 AYE . . . G 4 -11.604 18.051 15.583 1 59.18 ? C2 AYE 101 C 1 
HETATM 2 C C3 AYE . . . G 4 -11.19 16.818 15.732 1 56.03 ? C3 AYE 101 C 1 
HETATM 3 C C1 AYE . . . G 4 -10.602 19.189 15.474 1 52.7 ? C1 AYE 101 C 1 
HETATM 4 N N1 AYE . . . G 4 -9.385 18.691 14.867 1 49.38 ? N1 AYE 101 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#