data_6XZ8
#
_model_server_result.job_id            Pbg4HnhOvQY_JGvcaZYXeg 
_model_server_result.datetime_utc      '2024-11-22 17:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xz8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6XZ8 
#
_exptl.entry_id    6XZ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XZ8 
_cell.length_a            107.323 
_cell.length_b            121.73 
_cell.length_c            298.559 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XZ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 427 A CYS 450 1_555 D FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 D FE HEC . A HEC 601 1_555 E N16 O4T . A O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 B SG CYS 427 B CYS 450 1_555 F FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc4 F FE HEC . B HEC 601 1_555 G N16 O4T . B O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc5 C SG CYS 427 C CYS 450 1_555 H FE HEC . C HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc6 H FE HEC . C HEC 601 1_555 I N16 O4T . C O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     6XZ8 
_atom_sites.fract_transf_matrix[1][1]    0.009318 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 HEC A 1 601 1 HEC HEM . 
E 3 O4T A 1 602 1 O4T 595 . 
F 2 HEC B 1 601 2 HEC HEM . 
G 3 O4T B 1 602 2 O4T 595 . 
H 2 HEC C 1 601 3 HEC HEM . 
I 3 O4T C 1 602 3 O4T 595 . 
J 4 HOH A 1 701 1008 HOH HOH . 
J 4 HOH A 2 702 2034 HOH HOH . 
J 4 HOH A 3 703 2081 HOH HOH . 
J 4 HOH A 4 704 1016 HOH HOH . 
J 4 HOH A 5 705 1015 HOH HOH . 
J 4 HOH A 6 706 2079 HOH HOH . 
J 4 HOH A 7 707 1130 HOH HOH . 
J 4 HOH A 8 708 1026 HOH HOH . 
J 4 HOH A 9 709 1035 HOH HOH . 
J 4 HOH A 10 710 2139 HOH HOH . 
J 4 HOH A 11 711 1025 HOH HOH . 
J 4 HOH A 12 712 2094 HOH HOH . 
J 4 HOH A 13 713 2077 HOH HOH . 
J 4 HOH A 14 714 2078 HOH HOH . 
J 4 HOH A 15 715 2029 HOH HOH . 
J 4 HOH A 16 716 1036 HOH HOH . 
J 4 HOH A 17 717 1007 HOH HOH . 
J 4 HOH A 18 718 1037 HOH HOH . 
J 4 HOH A 19 719 1086 HOH HOH . 
J 4 HOH A 20 720 1072 HOH HOH . 
K 4 HOH B 1 701 2085 HOH HOH . 
K 4 HOH B 2 702 1009 HOH HOH . 
K 4 HOH B 3 703 1029 HOH HOH . 
K 4 HOH B 4 704 1074 HOH HOH . 
K 4 HOH B 5 705 2159 HOH HOH . 
K 4 HOH B 6 706 2028 HOH HOH . 
K 4 HOH B 7 707 2072 HOH HOH . 
K 4 HOH B 8 708 2092 HOH HOH . 
K 4 HOH B 9 709 1065 HOH HOH . 
K 4 HOH B 10 710 2086 HOH HOH . 
K 4 HOH B 11 711 2118 HOH HOH . 
K 4 HOH B 12 712 2099 HOH HOH . 
K 4 HOH B 13 713 1055 HOH HOH . 
K 4 HOH B 14 714 1017 HOH HOH . 
K 4 HOH B 15 715 2064 HOH HOH . 
K 4 HOH B 16 716 2039 HOH HOH . 
K 4 HOH B 17 717 2128 HOH HOH . 
K 4 HOH B 18 718 2088 HOH HOH . 
K 4 HOH B 19 719 1018 HOH HOH . 
K 4 HOH B 20 720 1049 HOH HOH . 
K 4 HOH B 21 721 2112 HOH HOH . 
K 4 HOH B 22 722 1119 HOH HOH . 
L 4 HOH C 1 701 2115 HOH HOH . 
L 4 HOH C 2 702 2111 HOH HOH . 
L 4 HOH C 3 703 2084 HOH HOH . 
L 4 HOH C 4 704 1062 HOH HOH . 
L 4 HOH C 5 705 1014 HOH HOH . 
L 4 HOH C 6 706 2109 HOH HOH . 
L 4 HOH C 7 707 2147 HOH HOH . 
L 4 HOH C 8 708 1010 HOH HOH . 
L 4 HOH C 9 709 2143 HOH HOH . 
L 4 HOH C 10 710 2097 HOH HOH . 
L 4 HOH C 11 711 1054 HOH HOH . 
L 4 HOH C 12 712 2027 HOH HOH . 
L 4 HOH C 13 713 2083 HOH HOH . 
L 4 HOH C 14 714 1083 HOH HOH . 
L 4 HOH C 15 715 2107 HOH HOH . 
L 4 HOH C 16 716 1070 HOH HOH . 
L 4 HOH C 17 717 2087 HOH HOH . 
L 4 HOH C 18 718 2076 HOH HOH . 
L 4 HOH C 19 719 1028 HOH HOH . 
L 4 HOH C 20 720 1124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . F 2 -30.009 33.678 19.273 1 51.17 ? FE HEC 601 B 1 
HETATM 2 C CHA HEC . . . F 2 -30.477 35.834 16.57 1 52.03 ? CHA HEC 601 B 1 
HETATM 3 C CHB HEC . . . F 2 -32.845 34.892 20.724 1 51.74 ? CHB HEC 601 B 1 
HETATM 4 C CHC HEC . . . F 2 -29.466 31.701 21.933 1 51.7 ? CHC HEC 601 B 1 
HETATM 5 C CHD HEC . . . F 2 -27.071 32.687 17.921 1 52.09 ? CHD HEC 601 B 1 
HETATM 6 N NA HEC . . . F 2 -31.322 35.039 18.75 1 51.42 ? NA HEC 601 B 1 
HETATM 7 C C1A HEC . . . F 2 -31.403 35.851 17.579 1 51.59 ? C1A HEC 601 B 1 
HETATM 8 C C2A HEC . . . F 2 -32.615 36.629 17.549 1 52.02 ? C2A HEC 601 B 1 
HETATM 9 C C3A HEC . . . F 2 -33.279 36.388 18.735 1 51.96 ? C3A HEC 601 B 1 
HETATM 10 C C4A HEC . . . F 2 -32.496 35.41 19.465 1 51.4 ? C4A HEC 601 B 1 
HETATM 11 C CMA HEC . . . F 2 -34.561 36.997 19.214 1 53.28 ? CMA HEC 601 B 1 
HETATM 12 C CAA HEC . . . F 2 -33.014 37.6 16.45 1 53.42 ? CAA HEC 601 B 1 
HETATM 13 C CBA HEC . . . F 2 -34.012 36.988 15.449 1 54.83 ? CBA HEC 601 B 1 
HETATM 14 C CGA HEC . . . F 2 -34.759 38.004 14.559 1 56 ? CGA HEC 601 B 1 
HETATM 15 O O1A HEC . . . F 2 -34.485 39.196 14.549 1 57.51 ? O1A HEC 601 B 1 
HETATM 16 O O2A HEC . . . F 2 -35.762 37.567 13.758 1 56.76 ? O2A HEC 601 B 1 
HETATM 17 N NB HEC . . . F 2 -30.948 33.394 20.991 1 50.91 ? NB HEC 601 B 1 
HETATM 18 C C1B HEC . . . F 2 -32.1 33.937 21.436 1 51.3 ? C1B HEC 601 B 1 
HETATM 19 C C2B HEC . . . F 2 -32.533 33.395 22.71 1 51.41 ? C2B HEC 601 B 1 
HETATM 20 C C3B HEC . . . F 2 -31.583 32.482 23.055 1 51.6 ? C3B HEC 601 B 1 
HETATM 21 C C4B HEC . . . F 2 -30.584 32.524 21.953 1 51.18 ? C4B HEC 601 B 1 
HETATM 22 C CMB HEC . . . F 2 -33.82 33.782 23.432 1 53.09 ? CMB HEC 601 B 1 
HETATM 23 C CAB HEC . . . F 2 -31.453 31.575 24.205 1 52.66 ? CAB HEC 601 B 1 
HETATM 24 C CBB HEC . . . F 2 -32.062 31.78 25.345 1 55.55 ? CBB HEC 601 B 1 
HETATM 25 N NC HEC . . . F 2 -28.536 32.492 19.831 1 51.1 ? NC HEC 601 B 1 
HETATM 26 C C1C HEC . . . F 2 -28.51 31.707 20.95 1 51.03 ? C1C HEC 601 B 1 
HETATM 27 C C2C HEC . . . F 2 -27.42 30.871 20.962 1 51.64 ? C2C HEC 601 B 1 
HETATM 28 C C3C HEC . . . F 2 -26.682 31.198 19.874 1 51.72 ? C3C HEC 601 B 1 
HETATM 29 C C4C HEC . . . F 2 -27.404 32.183 19.155 1 51.37 ? C4C HEC 601 B 1 
HETATM 30 C CMC HEC . . . F 2 -27.132 29.867 22.031 1 53.03 ? CMC HEC 601 B 1 
HETATM 31 C CAC HEC . . . F 2 -25.423 30.571 19.458 1 52.74 ? CAC HEC 601 B 1 
HETATM 32 C CBC HEC . . . F 2 -25.382 29.257 19.197 1 54.9 ? CBC HEC 601 B 1 
HETATM 33 N ND HEC . . . F 2 -29.021 34.156 17.625 1 51.31 ? ND HEC 601 B 1 
HETATM 34 C C1D HEC . . . F 2 -27.855 33.637 17.219 1 51.67 ? C1D HEC 601 B 1 
HETATM 35 C C2D HEC . . . F 2 -27.478 34.174 15.886 1 52.07 ? C2D HEC 601 B 1 
HETATM 36 C C3D HEC . . . F 2 -28.39 35.012 15.541 1 52.19 ? C3D HEC 601 B 1 
HETATM 37 C C4D HEC . . . F 2 -29.351 35.031 16.627 1 51.64 ? C4D HEC 601 B 1 
HETATM 38 C CMD HEC . . . F 2 -26.275 33.816 15.084 1 53.63 ? CMD HEC 601 B 1 
HETATM 39 C CAD HEC . . . F 2 -28.458 35.806 14.305 1 53.32 ? CAD HEC 601 B 1 
HETATM 40 C CBD HEC . . . F 2 -29.261 35.05 13.23 1 54.71 ? CBD HEC 601 B 1 
HETATM 41 C CGD HEC . . . F 2 -29.556 36.031 12.074 1 56.42 ? CGD HEC 601 B 1 
HETATM 42 O O1D HEC . . . F 2 -29.206 35.864 10.893 1 57.06 ? O1D HEC 601 B 1 
HETATM 43 O O2D HEC . . . F 2 -30.232 37.15 12.379 1 57.44 ? O2D HEC 601 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#