data_6XZ8
#
_model_server_result.job_id            XEnfre092eT1o5cNmtVyQQ 
_model_server_result.datetime_utc      '2024-11-22 16:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xz8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":602}' 
#
_entry.id    6XZ8 
#
_exptl.entry_id    6XZ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              393.888 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(1~{R})-1-[5-(6-chloranyl-1,1-dimethyl-3-oxidanylidene-isoindol-2-yl)pyridin-3-yl]ethyl]methanesulfonamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XZ8 
_cell.length_a            107.323 
_cell.length_b            121.73 
_cell.length_c            298.559 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XZ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 427 A CYS 450 1_555 D FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 D FE HEC . A HEC 601 1_555 E N16 O4T . A O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 B SG CYS 427 B CYS 450 1_555 F FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc4 F FE HEC . B HEC 601 1_555 G N16 O4T . B O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc5 C SG CYS 427 C CYS 450 1_555 H FE HEC . C HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc6 H FE HEC . C HEC 601 1_555 I N16 O4T . C O4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'C18 H20 Cl N3 O3 S' 
_chem_comp.formula_weight    393.888 
_chem_comp.id                O4T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(1~{R})-1-[5-(6-chloranyl-1,1-dimethyl-3-oxidanylidene-isoindol-2-yl)pyridin-3-yl]ethyl]methanesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C6 O4T doub 321 n y 
C5 C4 O4T sing 322 n y 
CL1 C4 O4T sing 323 n n 
C6 C9 O4T sing 324 n y 
C4 C7 O4T doub 325 n y 
C9 C10 O4T sing 326 n n 
C9 C8 O4T doub 327 n y 
O12 C10 O4T doub 328 n n 
C7 C8 O4T sing 329 n y 
C10 N11 O4T sing 330 n n 
C8 C2 O4T sing 331 n n 
N11 C2 O4T sing 332 n n 
N11 C14 O4T sing 333 n n 
C2 C3 O4T sing 334 n n 
C2 C1 O4T sing 335 n n 
C14 C18 O4T doub 336 n y 
C14 C15 O4T sing 337 n y 
C18 C19 O4T sing 338 n y 
C15 N16 O4T doub 339 n y 
C26 C20 O4T sing 340 n n 
N16 C17 O4T sing 341 n y 
C19 C17 O4T doub 342 n y 
C19 C20 O4T sing 343 n n 
C20 N21 O4T sing 344 n n 
N21 S22 O4T sing 345 n n 
O23 S22 O4T doub 346 n n 
S22 O24 O4T doub 347 n n 
S22 C25 O4T sing 348 n n 
C1 H1 O4T sing 349 n n 
C1 H2 O4T sing 350 n n 
C1 H3 O4T sing 351 n n 
C3 H4 O4T sing 352 n n 
C3 H5 O4T sing 353 n n 
C3 H6 O4T sing 354 n n 
C5 H7 O4T sing 355 n n 
C15 H8 O4T sing 356 n n 
C17 H9 O4T sing 357 n n 
C20 H10 O4T sing 358 n n 
N21 H11 O4T sing 359 n n 
C26 H12 O4T sing 360 n n 
C26 H13 O4T sing 361 n n 
C26 H14 O4T sing 362 n n 
C6 H15 O4T sing 363 n n 
C7 H16 O4T sing 364 n n 
C18 H17 O4T sing 365 n n 
C25 H18 O4T sing 366 n n 
C25 H19 O4T sing 367 n n 
C25 H20 O4T sing 368 n n 
#
_atom_sites.entry_id                     6XZ8 
_atom_sites.fract_transf_matrix[1][1]    0.009318 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 HEC A 1 601 1 HEC HEM . 
E 3 O4T A 1 602 1 O4T 595 . 
F 2 HEC B 1 601 2 HEC HEM . 
G 3 O4T B 1 602 2 O4T 595 . 
H 2 HEC C 1 601 3 HEC HEM . 
I 3 O4T C 1 602 3 O4T 595 . 
J 4 HOH A 1 701 1008 HOH HOH . 
J 4 HOH A 2 702 2034 HOH HOH . 
J 4 HOH A 3 703 2081 HOH HOH . 
J 4 HOH A 4 704 1016 HOH HOH . 
J 4 HOH A 5 705 1015 HOH HOH . 
J 4 HOH A 6 706 2079 HOH HOH . 
J 4 HOH A 7 707 1130 HOH HOH . 
J 4 HOH A 8 708 1026 HOH HOH . 
J 4 HOH A 9 709 1035 HOH HOH . 
J 4 HOH A 10 710 2139 HOH HOH . 
J 4 HOH A 11 711 1025 HOH HOH . 
J 4 HOH A 12 712 2094 HOH HOH . 
J 4 HOH A 13 713 2077 HOH HOH . 
J 4 HOH A 14 714 2078 HOH HOH . 
J 4 HOH A 15 715 2029 HOH HOH . 
J 4 HOH A 16 716 1036 HOH HOH . 
J 4 HOH A 17 717 1007 HOH HOH . 
J 4 HOH A 18 718 1037 HOH HOH . 
J 4 HOH A 19 719 1086 HOH HOH . 
J 4 HOH A 20 720 1072 HOH HOH . 
K 4 HOH B 1 701 2085 HOH HOH . 
K 4 HOH B 2 702 1009 HOH HOH . 
K 4 HOH B 3 703 1029 HOH HOH . 
K 4 HOH B 4 704 1074 HOH HOH . 
K 4 HOH B 5 705 2159 HOH HOH . 
K 4 HOH B 6 706 2028 HOH HOH . 
K 4 HOH B 7 707 2072 HOH HOH . 
K 4 HOH B 8 708 2092 HOH HOH . 
K 4 HOH B 9 709 1065 HOH HOH . 
K 4 HOH B 10 710 2086 HOH HOH . 
K 4 HOH B 11 711 2118 HOH HOH . 
K 4 HOH B 12 712 2099 HOH HOH . 
K 4 HOH B 13 713 1055 HOH HOH . 
K 4 HOH B 14 714 1017 HOH HOH . 
K 4 HOH B 15 715 2064 HOH HOH . 
K 4 HOH B 16 716 2039 HOH HOH . 
K 4 HOH B 17 717 2128 HOH HOH . 
K 4 HOH B 18 718 2088 HOH HOH . 
K 4 HOH B 19 719 1018 HOH HOH . 
K 4 HOH B 20 720 1049 HOH HOH . 
K 4 HOH B 21 721 2112 HOH HOH . 
K 4 HOH B 22 722 1119 HOH HOH . 
L 4 HOH C 1 701 2115 HOH HOH . 
L 4 HOH C 2 702 2111 HOH HOH . 
L 4 HOH C 3 703 2084 HOH HOH . 
L 4 HOH C 4 704 1062 HOH HOH . 
L 4 HOH C 5 705 1014 HOH HOH . 
L 4 HOH C 6 706 2109 HOH HOH . 
L 4 HOH C 7 707 2147 HOH HOH . 
L 4 HOH C 8 708 1010 HOH HOH . 
L 4 HOH C 9 709 2143 HOH HOH . 
L 4 HOH C 10 710 2097 HOH HOH . 
L 4 HOH C 11 711 1054 HOH HOH . 
L 4 HOH C 12 712 2027 HOH HOH . 
L 4 HOH C 13 713 2083 HOH HOH . 
L 4 HOH C 14 714 1083 HOH HOH . 
L 4 HOH C 15 715 2107 HOH HOH . 
L 4 HOH C 16 716 1070 HOH HOH . 
L 4 HOH C 17 717 2087 HOH HOH . 
L 4 HOH C 18 718 2076 HOH HOH . 
L 4 HOH C 19 719 1028 HOH HOH . 
L 4 HOH C 20 720 1124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 O4T . . . I 3 24.944 28.719 33.875 1 51.13 ? C1 O4T 602 C 1 
HETATM 2 C C2 O4T . . . I 3 23.788 27.831 34.331 1 55.68 ? C2 O4T 602 C 1 
HETATM 3 C C3 O4T . . . I 3 24.376 26.586 35.022 1 54.57 ? C3 O4T 602 C 1 
HETATM 4 C C4 O4T . . . I 3 21.985 29.616 37.263 1 75.57 ? C4 O4T 602 C 1 
HETATM 5 C C5 O4T . . . I 3 20.769 29.843 36.621 1 68.63 ? C5 O4T 602 C 1 
HETATM 6 C C8 O4T . . . I 3 22.873 28.548 35.303 1 62.55 ? C8 O4T 602 C 1 
HETATM 7 C C9 O4T . . . I 3 21.641 28.761 34.657 1 61.29 ? C9 O4T 602 C 1 
HETATM 8 C C10 O4T . . . I 3 21.725 28.142 33.331 1 57.68 ? C10 O4T 602 C 1 
HETATM 9 C C14 O4T . . . I 3 23.322 26.915 31.983 1 53.42 ? C14 O4T 602 C 1 
HETATM 10 C C15 O4T . . . I 3 23.655 25.562 31.979 1 52.01 ? C15 O4T 602 C 1 
HETATM 11 C C17 O4T . . . I 3 24.019 25.641 29.71 1 52.2 ? C17 O4T 602 C 1 
HETATM 12 C C19 O4T . . . I 3 23.705 26.975 29.629 1 53.79 ? C19 O4T 602 C 1 
HETATM 13 C C20 O4T . . . I 3 23.707 27.631 28.281 1 57.91 ? C20 O4T 602 C 1 
HETATM 14 N N21 O4T . . . I 3 24.399 28.915 28.293 1 59.34 ? N21 O4T 602 C 1 
HETATM 15 O O23 O4T . . . I 3 26.285 30.365 28.223 1 67.24 ? O23 O4T 602 C 1 
HETATM 16 C C26 O4T . . . I 3 22.26 27.821 27.831 1 59.88 ? C26 O4T 602 C 1 
HETATM 17 C C6 O4T . . . I 3 20.585 29.4 35.326 1 64.07 ? C6 O4T 602 C 1 
HETATM 18 C C7 O4T . . . I 3 23.031 28.982 36.602 1 69.13 ? C7 O4T 602 C 1 
HETATM 19 N N11 O4T . . . I 3 22.938 27.559 33.158 1 55.47 ? N11 O4T 602 C 1 
HETATM 20 O O12 O4T . . . I 3 20.78 28.073 32.565 1 56.29 ? O12 O4T 602 C 1 
HETATM 21 CL CL1 O4T . . . I 3 22.269 30.127 38.903 1 88.33 ? CL1 O4T 602 C 1 
HETATM 22 N N16 O4T . . . I 3 24 24.974 30.853 1 51.43 ? N16 O4T 602 C 1 
HETATM 23 C C18 O4T . . . I 3 23.335 27.635 30.785 1 53.15 ? C18 O4T 602 C 1 
HETATM 24 S S22 O4T . . . I 3 26.043 28.981 28.413 1 62.28 ? S22 O4T 602 C 1 
HETATM 25 O O24 O4T . . . I 3 26.371 28.34 29.64 1 60.13 ? O24 O4T 602 C 1 
HETATM 26 C C25 O4T . . . I 3 26.766 28.102 27.001 1 61.88 ? C25 O4T 602 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#