data_6XZI # _model_server_result.job_id Ik0_zuDaz3eTD1Brj7BbcQ _model_server_result.datetime_utc '2024-10-11 13:25:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6XZI # _exptl.entry_id 6XZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XZI _cell.length_a 66.35 _cell.length_b 66.35 _cell.length_c 262.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LEU 5 B LEU 690 1_555 B N OUK 6 B OUK 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 B C OUK 6 B OUK 691 1_555 B N UIL 7 B UIL 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 B C UIL 7 B UIL 692 1_555 B N URL 8 B URL 693 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 6XZI _atom_sites.fract_transf_matrix[1][1] 0.015072 _atom_sites.fract_transf_matrix[1][2] 0.008702 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VDX A 1 501 525 VDX VDX . D 4 ACT A 1 502 1428 ACT ACT . E 5 HOH A 1 601 65 HOH HOH . E 5 HOH A 2 602 57 HOH HOH . E 5 HOH A 3 603 31 HOH HOH . E 5 HOH A 4 604 54 HOH HOH . E 5 HOH A 5 605 66 HOH HOH . E 5 HOH A 6 606 63 HOH HOH . E 5 HOH A 7 607 11 HOH HOH . E 5 HOH A 8 608 61 HOH HOH . E 5 HOH A 9 609 48 HOH HOH . E 5 HOH A 10 610 62 HOH HOH . E 5 HOH A 11 611 59 HOH HOH . E 5 HOH A 12 612 25 HOH HOH . E 5 HOH A 13 613 29 HOH HOH . E 5 HOH A 14 614 1 HOH HOH . E 5 HOH A 15 615 67 HOH HOH . E 5 HOH A 16 616 4 HOH HOH . E 5 HOH A 17 617 21 HOH HOH . E 5 HOH A 18 618 44 HOH HOH . E 5 HOH A 19 619 26 HOH HOH . E 5 HOH A 20 620 7 HOH HOH . E 5 HOH A 21 621 23 HOH HOH . E 5 HOH A 22 622 39 HOH HOH . E 5 HOH A 23 623 10 HOH HOH . E 5 HOH A 24 624 13 HOH HOH . E 5 HOH A 25 625 2 HOH HOH . E 5 HOH A 26 626 9 HOH HOH . E 5 HOH A 27 627 27 HOH HOH . E 5 HOH A 28 628 16 HOH HOH . E 5 HOH A 29 629 5 HOH HOH . E 5 HOH A 30 630 6 HOH HOH . E 5 HOH A 31 631 64 HOH HOH . E 5 HOH A 32 632 41 HOH HOH . E 5 HOH A 33 633 45 HOH HOH . E 5 HOH A 34 634 22 HOH HOH . E 5 HOH A 35 635 3 HOH HOH . E 5 HOH A 36 636 34 HOH HOH . E 5 HOH A 37 637 32 HOH HOH . E 5 HOH A 38 638 14 HOH HOH . E 5 HOH A 39 639 60 HOH HOH . E 5 HOH A 40 640 28 HOH HOH . E 5 HOH A 41 641 15 HOH HOH . E 5 HOH A 42 642 38 HOH HOH . E 5 HOH A 43 643 37 HOH HOH . E 5 HOH A 44 644 36 HOH HOH . E 5 HOH A 45 645 24 HOH HOH . E 5 HOH A 46 646 18 HOH HOH . E 5 HOH A 47 647 20 HOH HOH . E 5 HOH A 48 648 12 HOH HOH . E 5 HOH A 49 649 17 HOH HOH . E 5 HOH A 50 650 42 HOH HOH . E 5 HOH A 51 651 8 HOH HOH . E 5 HOH A 52 652 56 HOH HOH . E 5 HOH A 53 653 53 HOH HOH . E 5 HOH A 54 654 35 HOH HOH . E 5 HOH A 55 655 49 HOH HOH . E 5 HOH A 56 656 30 HOH HOH . E 5 HOH A 57 657 58 HOH HOH . E 5 HOH A 58 658 46 HOH HOH . E 5 HOH A 59 659 33 HOH HOH . E 5 HOH A 60 660 43 HOH HOH . E 5 HOH A 61 661 40 HOH HOH . E 5 HOH A 62 662 50 HOH HOH . E 5 HOH A 63 663 55 HOH HOH . E 5 HOH A 64 664 47 HOH HOH . E 5 HOH A 65 665 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 38.113 -26.387 -7.49 1 37.69 ? C ACT 502 A 1 HETATM 2 O O ACT . . . D 4 39.088 -26.906 -8.112 1 45.91 -1 O ACT 502 A 1 HETATM 3 O OXT ACT . . . D 4 36.958 -26.858 -7.303 1 43.86 ? OXT ACT 502 A 1 HETATM 4 C CH3 ACT . . . D 4 38.381 -24.975 -6.898 1 35.39 ? CH3 ACT 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #