data_6XZK # _model_server_result.job_id wtv8ag-A_uaAhYaDmysvbw _model_server_result.datetime_utc '2024-11-25 09:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6XZK # _exptl.entry_id 6XZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XZK _cell.length_a 66.112 _cell.length_b 66.112 _cell.length_c 262.488 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 3 B ALA 3 1_555 B N UIA 4 B UIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C UIA 4 B UIA 4 1_555 B N URL 5 B URL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 B C URL 5 B URL 5 1_555 B N MFH 6 B MFH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C MFH 6 B MFH 6 1_555 B N URV 7 B URV 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 B C URV 7 B URV 7 1_555 B N UZN 8 B UZN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C UZN 8 B UZN 8 1_555 B N LYS 9 B LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 6XZK _atom_sites.fract_transf_matrix[1][1] 0.015126 _atom_sites.fract_transf_matrix[1][2] 0.008733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VDX A 1 501 1 VDX VDX . D 4 ACT A 1 502 1428 ACT ACT . E 4 ACT A 1 503 1429 ACT ACT . F 5 HOH A 1 601 97 HOH HOH . F 5 HOH A 2 602 26 HOH HOH . F 5 HOH A 3 603 32 HOH HOH . F 5 HOH A 4 604 98 HOH HOH . F 5 HOH A 5 605 19 HOH HOH . F 5 HOH A 6 606 95 HOH HOH . F 5 HOH A 7 607 90 HOH HOH . F 5 HOH A 8 608 31 HOH HOH . F 5 HOH A 9 609 36 HOH HOH . F 5 HOH A 10 610 29 HOH HOH . F 5 HOH A 11 611 48 HOH HOH . F 5 HOH A 12 612 10 HOH HOH . F 5 HOH A 13 613 61 HOH HOH . F 5 HOH A 14 614 75 HOH HOH . F 5 HOH A 15 615 8 HOH HOH . F 5 HOH A 16 616 28 HOH HOH . F 5 HOH A 17 617 103 HOH HOH . F 5 HOH A 18 618 66 HOH HOH . F 5 HOH A 19 619 96 HOH HOH . F 5 HOH A 20 620 43 HOH HOH . F 5 HOH A 21 621 70 HOH HOH . F 5 HOH A 22 622 51 HOH HOH . F 5 HOH A 23 623 12 HOH HOH . F 5 HOH A 24 624 69 HOH HOH . F 5 HOH A 25 625 2 HOH HOH . F 5 HOH A 26 626 35 HOH HOH . F 5 HOH A 27 627 62 HOH HOH . F 5 HOH A 28 628 42 HOH HOH . F 5 HOH A 29 629 67 HOH HOH . F 5 HOH A 30 630 84 HOH HOH . F 5 HOH A 31 631 74 HOH HOH . F 5 HOH A 32 632 100 HOH HOH . F 5 HOH A 33 633 6 HOH HOH . F 5 HOH A 34 634 7 HOH HOH . F 5 HOH A 35 635 18 HOH HOH . F 5 HOH A 36 636 9 HOH HOH . F 5 HOH A 37 637 40 HOH HOH . F 5 HOH A 38 638 21 HOH HOH . F 5 HOH A 39 639 1 HOH HOH . F 5 HOH A 40 640 56 HOH HOH . F 5 HOH A 41 641 82 HOH HOH . F 5 HOH A 42 642 39 HOH HOH . F 5 HOH A 43 643 5 HOH HOH . F 5 HOH A 44 644 25 HOH HOH . F 5 HOH A 45 645 11 HOH HOH . F 5 HOH A 46 646 4 HOH HOH . F 5 HOH A 47 647 16 HOH HOH . F 5 HOH A 48 648 50 HOH HOH . F 5 HOH A 49 649 24 HOH HOH . F 5 HOH A 50 650 22 HOH HOH . F 5 HOH A 51 651 94 HOH HOH . F 5 HOH A 52 652 27 HOH HOH . F 5 HOH A 53 653 85 HOH HOH . F 5 HOH A 54 654 53 HOH HOH . F 5 HOH A 55 655 37 HOH HOH . F 5 HOH A 56 656 81 HOH HOH . F 5 HOH A 57 657 72 HOH HOH . F 5 HOH A 58 658 92 HOH HOH . F 5 HOH A 59 659 83 HOH HOH . F 5 HOH A 60 660 104 HOH HOH . F 5 HOH A 61 661 45 HOH HOH . F 5 HOH A 62 662 76 HOH HOH . F 5 HOH A 63 663 30 HOH HOH . F 5 HOH A 64 664 20 HOH HOH . F 5 HOH A 65 665 78 HOH HOH . F 5 HOH A 66 666 63 HOH HOH . F 5 HOH A 67 667 60 HOH HOH . F 5 HOH A 68 668 87 HOH HOH . F 5 HOH A 69 669 3 HOH HOH . F 5 HOH A 70 670 34 HOH HOH . F 5 HOH A 71 671 77 HOH HOH . F 5 HOH A 72 672 41 HOH HOH . F 5 HOH A 73 673 71 HOH HOH . F 5 HOH A 74 674 46 HOH HOH . F 5 HOH A 75 675 33 HOH HOH . F 5 HOH A 76 676 57 HOH HOH . F 5 HOH A 77 677 88 HOH HOH . F 5 HOH A 78 678 55 HOH HOH . F 5 HOH A 79 679 23 HOH HOH . F 5 HOH A 80 680 91 HOH HOH . F 5 HOH A 81 681 68 HOH HOH . F 5 HOH A 82 682 102 HOH HOH . F 5 HOH A 83 683 38 HOH HOH . F 5 HOH A 84 684 99 HOH HOH . F 5 HOH A 85 685 105 HOH HOH . F 5 HOH A 86 686 14 HOH HOH . F 5 HOH A 87 687 101 HOH HOH . F 5 HOH A 88 688 59 HOH HOH . F 5 HOH A 89 689 58 HOH HOH . F 5 HOH A 90 690 52 HOH HOH . F 5 HOH A 91 691 49 HOH HOH . F 5 HOH A 92 692 73 HOH HOH . F 5 HOH A 93 693 89 HOH HOH . F 5 HOH A 94 694 106 HOH HOH . F 5 HOH A 95 695 93 HOH HOH . G 5 HOH B 1 101 15 HOH HOH . G 5 HOH B 2 102 13 HOH HOH . G 5 HOH B 3 103 64 HOH HOH . G 5 HOH B 4 104 65 HOH HOH . G 5 HOH B 5 105 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 -38.686 26.267 -7.756 1 36.27 ? C ACT 502 A 1 HETATM 2 O O ACT . . . D 4 -39.633 26.825 -8.375 1 43.87 -1 O ACT 502 A 1 HETATM 3 O OXT ACT . . . D 4 -37.512 26.687 -7.572 1 35.13 ? OXT ACT 502 A 1 HETATM 4 C CH3 ACT . . . D 4 -39.03 24.871 -7.138 1 38.08 ? CH3 ACT 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #