data_6XZM # _model_server_result.job_id o1QtfiUlcdu7gCPr1zlAFQ _model_server_result.datetime_utc '2025-03-01 06:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6XZM # _exptl.entry_id 6XZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XZM _cell.length_a 98.266 _cell.length_b 98.266 _cell.length_c 138.836 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 308 A GLN 316 1_555 A N CME 309 A CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 309 A CME 317 1_555 A N SER 310 A SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C GLN 308 B GLN 316 1_555 B N CME 309 B CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C CME 309 B CME 317 1_555 B N SER 310 B SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 261 n n C1 C2 PEG sing 262 n n C1 H11 PEG sing 263 n n C1 H12 PEG sing 264 n n O1 HO1 PEG sing 265 n n C2 O2 PEG sing 266 n n C2 H21 PEG sing 267 n n C2 H22 PEG sing 268 n n O2 C3 PEG sing 269 n n C3 C4 PEG sing 270 n n C3 H31 PEG sing 271 n n C3 H32 PEG sing 272 n n C4 O4 PEG sing 273 n n C4 H41 PEG sing 274 n n C4 H42 PEG sing 275 n n O4 HO4 PEG sing 276 n n # _atom_sites.entry_id 6XZM _atom_sites.fract_transf_matrix[1][1] 0.010176 _atom_sites.fract_transf_matrix[1][2] 0.005875 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 401 1 NO3 NO3 . D 2 NO3 A 1 402 3 NO3 NO3 . E 3 PEG A 1 403 2 PEG PEG . F 2 NO3 B 1 401 2 NO3 NO3 . G 2 NO3 B 1 402 4 NO3 NO3 . H 3 PEG B 1 403 1 PEG PEG . I 3 PEG B 1 404 3 PEG PEG . J 4 PGE B 1 405 4 PGE PGE . K 5 HOH A 1 501 68 HOH HOH . K 5 HOH A 2 502 52 HOH HOH . K 5 HOH A 3 503 51 HOH HOH . K 5 HOH A 4 504 8 HOH HOH . K 5 HOH A 5 505 32 HOH HOH . K 5 HOH A 6 506 10 HOH HOH . K 5 HOH A 7 507 48 HOH HOH . K 5 HOH A 8 508 20 HOH HOH . K 5 HOH A 9 509 25 HOH HOH . K 5 HOH A 10 510 38 HOH HOH . K 5 HOH A 11 511 64 HOH HOH . K 5 HOH A 12 512 21 HOH HOH . K 5 HOH A 13 513 61 HOH HOH . K 5 HOH A 14 514 30 HOH HOH . K 5 HOH A 15 515 40 HOH HOH . K 5 HOH A 16 516 42 HOH HOH . K 5 HOH A 17 517 46 HOH HOH . K 5 HOH A 18 518 50 HOH HOH . K 5 HOH A 19 519 37 HOH HOH . K 5 HOH A 20 520 22 HOH HOH . K 5 HOH A 21 521 23 HOH HOH . K 5 HOH A 22 522 7 HOH HOH . K 5 HOH A 23 523 13 HOH HOH . K 5 HOH A 24 524 43 HOH HOH . K 5 HOH A 25 525 35 HOH HOH . K 5 HOH A 26 526 2 HOH HOH . K 5 HOH A 27 527 49 HOH HOH . K 5 HOH A 28 528 53 HOH HOH . K 5 HOH A 29 529 29 HOH HOH . K 5 HOH A 30 530 4 HOH HOH . K 5 HOH A 31 531 36 HOH HOH . K 5 HOH A 32 532 1 HOH HOH . K 5 HOH A 33 533 19 HOH HOH . K 5 HOH A 34 534 5 HOH HOH . K 5 HOH A 35 535 12 HOH HOH . K 5 HOH A 36 536 39 HOH HOH . K 5 HOH A 37 537 26 HOH HOH . K 5 HOH A 38 538 34 HOH HOH . K 5 HOH A 39 539 54 HOH HOH . L 5 HOH B 1 501 60 HOH HOH . L 5 HOH B 2 502 47 HOH HOH . L 5 HOH B 3 503 3 HOH HOH . L 5 HOH B 4 504 55 HOH HOH . L 5 HOH B 5 505 58 HOH HOH . L 5 HOH B 6 506 56 HOH HOH . L 5 HOH B 7 507 63 HOH HOH . L 5 HOH B 8 508 16 HOH HOH . L 5 HOH B 9 509 45 HOH HOH . L 5 HOH B 10 510 6 HOH HOH . L 5 HOH B 11 511 67 HOH HOH . L 5 HOH B 12 512 57 HOH HOH . L 5 HOH B 13 513 17 HOH HOH . L 5 HOH B 14 514 69 HOH HOH . L 5 HOH B 15 515 18 HOH HOH . L 5 HOH B 16 516 27 HOH HOH . L 5 HOH B 17 517 33 HOH HOH . L 5 HOH B 18 518 24 HOH HOH . L 5 HOH B 19 519 44 HOH HOH . L 5 HOH B 20 520 59 HOH HOH . L 5 HOH B 21 521 11 HOH HOH . L 5 HOH B 22 522 15 HOH HOH . L 5 HOH B 23 523 14 HOH HOH . L 5 HOH B 24 524 66 HOH HOH . L 5 HOH B 25 525 31 HOH HOH . L 5 HOH B 26 526 74 HOH HOH . L 5 HOH B 27 527 41 HOH HOH . L 5 HOH B 28 528 9 HOH HOH . L 5 HOH B 29 529 28 HOH HOH . L 5 HOH B 30 530 62 HOH HOH . L 5 HOH B 31 531 65 HOH HOH . L 5 HOH B 32 532 72 HOH HOH . L 5 HOH B 33 533 75 HOH HOH . L 5 HOH B 34 534 73 HOH HOH . L 5 HOH B 35 535 70 HOH HOH . L 5 HOH B 36 536 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 3 7.202 -2.002 -22.689 1 53.77 ? C1 PEG 403 A 1 HETATM 2 O O1 PEG . . . E 3 6.811 -1.934 -24.035 1 66.62 ? O1 PEG 403 A 1 HETATM 3 C C2 PEG . . . E 3 6.011 -1.631 -21.802 1 53.8 ? C2 PEG 403 A 1 HETATM 4 O O2 PEG . . . E 3 4.803 -2.202 -22.217 1 54.85 ? O2 PEG 403 A 1 HETATM 5 C C3 PEG . . . E 3 3.589 -1.475 -22.063 1 55.04 ? C3 PEG 403 A 1 HETATM 6 C C4 PEG . . . E 3 2.923 -1.377 -23.446 1 49.26 ? C4 PEG 403 A 1 HETATM 7 O O4 PEG . . . E 3 1.613 -0.864 -23.393 1 59.64 ? O4 PEG 403 A 1 HETATM 8 H H11 PEG . . . E 3 7.931 -1.382 -22.531 1 64.52 ? H11 PEG 403 A 1 HETATM 9 H H12 PEG . . . E 3 7.493 -2.904 -22.481 1 64.52 ? H12 PEG 403 A 1 HETATM 10 H HO1 PEG . . . E 3 6.512 -1.157 -24.204 1 79.94 ? HO1 PEG 403 A 1 HETATM 11 H H21 PEG . . . E 3 5.913 -0.666 -21.802 1 64.56 ? H21 PEG 403 A 1 HETATM 12 H H22 PEG . . . E 3 6.196 -1.924 -20.896 1 64.56 ? H22 PEG 403 A 1 HETATM 13 H H31 PEG . . . E 3 3.779 -0.586 -21.726 1 66.05 ? H31 PEG 403 A 1 HETATM 14 H H32 PEG . . . E 3 3.002 -1.942 -21.448 1 66.05 ? H32 PEG 403 A 1 HETATM 15 H H41 PEG . . . E 3 2.895 -2.262 -23.842 1 59.11 ? H41 PEG 403 A 1 HETATM 16 H H42 PEG . . . E 3 3.461 -0.799 -24.01 1 59.11 ? H42 PEG 403 A 1 HETATM 17 H HO4 PEG . . . E 3 1.637 -0.046 -23.164 1 71.57 ? HO4 PEG 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #