data_6XZM # _model_server_result.job_id aWc9lFbtpY5Thc7YFsP-mA _model_server_result.datetime_utc '2025-03-01 05:51:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":405}' # _entry.id 6XZM # _exptl.entry_id 6XZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XZM _cell.length_a 98.266 _cell.length_b 98.266 _cell.length_c 138.836 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 308 A GLN 316 1_555 A N CME 309 A CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 309 A CME 317 1_555 A N SER 310 A SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C GLN 308 B GLN 316 1_555 B N CME 309 B CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C CME 309 B CME 317 1_555 B N SER 310 B SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 277 n n C1 C2 PGE sing 278 n n C1 H1 PGE sing 279 n n C1 H12 PGE sing 280 n n O1 HO1 PGE sing 281 n n C2 O2 PGE sing 282 n n C2 H2 PGE sing 283 n n C2 H22 PGE sing 284 n n O2 C3 PGE sing 285 n n C3 C4 PGE sing 286 n n C3 H3 PGE sing 287 n n C3 H32 PGE sing 288 n n C4 O3 PGE sing 289 n n C4 H4 PGE sing 290 n n C4 H42 PGE sing 291 n n O4 C6 PGE sing 292 n n O4 HO4 PGE sing 293 n n C6 C5 PGE sing 294 n n C6 H6 PGE sing 295 n n C6 H62 PGE sing 296 n n C5 O3 PGE sing 297 n n C5 H5 PGE sing 298 n n C5 H52 PGE sing 299 n n # _atom_sites.entry_id 6XZM _atom_sites.fract_transf_matrix[1][1] 0.010176 _atom_sites.fract_transf_matrix[1][2] 0.005875 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 401 1 NO3 NO3 . D 2 NO3 A 1 402 3 NO3 NO3 . E 3 PEG A 1 403 2 PEG PEG . F 2 NO3 B 1 401 2 NO3 NO3 . G 2 NO3 B 1 402 4 NO3 NO3 . H 3 PEG B 1 403 1 PEG PEG . I 3 PEG B 1 404 3 PEG PEG . J 4 PGE B 1 405 4 PGE PGE . K 5 HOH A 1 501 68 HOH HOH . K 5 HOH A 2 502 52 HOH HOH . K 5 HOH A 3 503 51 HOH HOH . K 5 HOH A 4 504 8 HOH HOH . K 5 HOH A 5 505 32 HOH HOH . K 5 HOH A 6 506 10 HOH HOH . K 5 HOH A 7 507 48 HOH HOH . K 5 HOH A 8 508 20 HOH HOH . K 5 HOH A 9 509 25 HOH HOH . K 5 HOH A 10 510 38 HOH HOH . K 5 HOH A 11 511 64 HOH HOH . K 5 HOH A 12 512 21 HOH HOH . K 5 HOH A 13 513 61 HOH HOH . K 5 HOH A 14 514 30 HOH HOH . K 5 HOH A 15 515 40 HOH HOH . K 5 HOH A 16 516 42 HOH HOH . K 5 HOH A 17 517 46 HOH HOH . K 5 HOH A 18 518 50 HOH HOH . K 5 HOH A 19 519 37 HOH HOH . K 5 HOH A 20 520 22 HOH HOH . K 5 HOH A 21 521 23 HOH HOH . K 5 HOH A 22 522 7 HOH HOH . K 5 HOH A 23 523 13 HOH HOH . K 5 HOH A 24 524 43 HOH HOH . K 5 HOH A 25 525 35 HOH HOH . K 5 HOH A 26 526 2 HOH HOH . K 5 HOH A 27 527 49 HOH HOH . K 5 HOH A 28 528 53 HOH HOH . K 5 HOH A 29 529 29 HOH HOH . K 5 HOH A 30 530 4 HOH HOH . K 5 HOH A 31 531 36 HOH HOH . K 5 HOH A 32 532 1 HOH HOH . K 5 HOH A 33 533 19 HOH HOH . K 5 HOH A 34 534 5 HOH HOH . K 5 HOH A 35 535 12 HOH HOH . K 5 HOH A 36 536 39 HOH HOH . K 5 HOH A 37 537 26 HOH HOH . K 5 HOH A 38 538 34 HOH HOH . K 5 HOH A 39 539 54 HOH HOH . L 5 HOH B 1 501 60 HOH HOH . L 5 HOH B 2 502 47 HOH HOH . L 5 HOH B 3 503 3 HOH HOH . L 5 HOH B 4 504 55 HOH HOH . L 5 HOH B 5 505 58 HOH HOH . L 5 HOH B 6 506 56 HOH HOH . L 5 HOH B 7 507 63 HOH HOH . L 5 HOH B 8 508 16 HOH HOH . L 5 HOH B 9 509 45 HOH HOH . L 5 HOH B 10 510 6 HOH HOH . L 5 HOH B 11 511 67 HOH HOH . L 5 HOH B 12 512 57 HOH HOH . L 5 HOH B 13 513 17 HOH HOH . L 5 HOH B 14 514 69 HOH HOH . L 5 HOH B 15 515 18 HOH HOH . L 5 HOH B 16 516 27 HOH HOH . L 5 HOH B 17 517 33 HOH HOH . L 5 HOH B 18 518 24 HOH HOH . L 5 HOH B 19 519 44 HOH HOH . L 5 HOH B 20 520 59 HOH HOH . L 5 HOH B 21 521 11 HOH HOH . L 5 HOH B 22 522 15 HOH HOH . L 5 HOH B 23 523 14 HOH HOH . L 5 HOH B 24 524 66 HOH HOH . L 5 HOH B 25 525 31 HOH HOH . L 5 HOH B 26 526 74 HOH HOH . L 5 HOH B 27 527 41 HOH HOH . L 5 HOH B 28 528 9 HOH HOH . L 5 HOH B 29 529 28 HOH HOH . L 5 HOH B 30 530 62 HOH HOH . L 5 HOH B 31 531 65 HOH HOH . L 5 HOH B 32 532 72 HOH HOH . L 5 HOH B 33 533 75 HOH HOH . L 5 HOH B 34 534 73 HOH HOH . L 5 HOH B 35 535 70 HOH HOH . L 5 HOH B 36 536 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . J 4 63.047 23.081 11.263 1 61.14 ? C1 PGE 405 B 1 HETATM 2 O O1 PGE . . . J 4 63.586 22.703 10.012 1 66.77 ? O1 PGE 405 B 1 HETATM 3 C C2 PGE . . . J 4 61.693 22.406 11.334 1 52.21 ? C2 PGE 405 B 1 HETATM 4 O O2 PGE . . . J 4 61.828 21.031 11.621 1 55.87 ? O2 PGE 405 B 1 HETATM 5 C C3 PGE . . . J 4 60.569 20.433 11.934 1 52.1 ? C3 PGE 405 B 1 HETATM 6 C C4 PGE . . . J 4 60.844 19.352 12.947 1 46.92 ? C4 PGE 405 B 1 HETATM 7 O O4 PGE . . . J 4 64.674 16.687 12.618 1 66.09 ? O4 PGE 405 B 1 HETATM 8 C C6 PGE . . . J 4 63.262 16.651 12.437 1 55.92 ? C6 PGE 405 B 1 HETATM 9 C C5 PGE . . . J 4 62.561 17.681 13.309 1 50.09 ? C5 PGE 405 B 1 HETATM 10 O O3 PGE . . . J 4 61.989 18.666 12.46 1 50.64 ? O3 PGE 405 B 1 HETATM 11 H H1 PGE . . . J 4 63.662 22.742 12.11 1 73.37 ? H1 PGE 405 B 1 HETATM 12 H H12 PGE . . . J 4 62.909 24.173 11.344 1 73.37 ? H12 PGE 405 B 1 HETATM 13 H HO1 PGE . . . J 4 62.862 22.67 9.374 1 80.13 ? HO1 PGE 405 B 1 HETATM 14 H H2 PGE . . . J 4 61.091 22.902 12.116 1 62.66 ? H2 PGE 405 B 1 HETATM 15 H H22 PGE . . . J 4 61.17 22.557 10.375 1 62.66 ? H22 PGE 405 B 1 HETATM 16 H H3 PGE . . . J 4 59.868 21.169 12.361 1 62.52 ? H3 PGE 405 B 1 HETATM 17 H H32 PGE . . . J 4 60.101 19.99 11.037 1 62.52 ? H32 PGE 405 B 1 HETATM 18 H H4 PGE . . . J 4 61.031 19.804 13.937 1 56.31 ? H4 PGE 405 B 1 HETATM 19 H H42 PGE . . . J 4 59.97 18.684 13.026 1 56.31 ? H42 PGE 405 B 1 HETATM 20 H HO4 PGE . . . J 4 65.043 15.877 12.245 1 79.31 ? HO4 PGE 405 B 1 HETATM 21 H H6 PGE . . . J 4 62.857 15.658 12.697 1 67.1 ? H6 PGE 405 B 1 HETATM 22 H H62 PGE . . . J 4 62.987 16.853 11.391 1 67.1 ? H62 PGE 405 B 1 HETATM 23 H H5 PGE . . . J 4 63.291 18.125 14.007 1 60.1 ? H5 PGE 405 B 1 HETATM 24 H H52 PGE . . . J 4 61.782 17.18 13.909 1 60.1 ? H52 PGE 405 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #