data_6XZN # _model_server_result.job_id vPj6pjVRPMTV1bDrypzzLg _model_server_result.datetime_utc '2024-11-24 07:41:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xzn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6XZN # _exptl.entry_id 6XZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XZN _cell.length_a 50.541 _cell.length_b 99.123 _cell.length_c 132.727 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 127 1_555 A SG CYS 124 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf2 B SG CYS 119 B CYS 127 1_555 B SG CYS 124 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A C VAL 28 A VAL 36 1_555 A N CME 29 A CME 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CME 29 A CME 37 1_555 A N SER 30 A SER 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLN 308 A GLN 316 1_555 A N CME 309 A CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C CME 309 A CME 317 1_555 A N SER 310 A SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C VAL 28 B VAL 36 1_555 B N CME 29 B CME 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B C CME 29 B CME 37 1_555 B N SER 30 B SER 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C GLN 308 B GLN 316 1_555 B N CME 309 B CME 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale8 B C CME 309 B CME 317 1_555 B N SER 310 B SER 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 6XZN _atom_sites.fract_transf_matrix[1][1] 0.019786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 3 PEG A 1 402 3 PEG PEG . E 2 GOL B 1 401 2 GOL GOL . F 4 PGE B 1 402 4 PGE PGE . G 4 PGE B 1 403 5 PGE PGE . H 5 HOH A 1 501 198 HOH HOH . H 5 HOH A 2 502 65 HOH HOH . H 5 HOH A 3 503 130 HOH HOH . H 5 HOH A 4 504 110 HOH HOH . H 5 HOH A 5 505 13 HOH HOH . H 5 HOH A 6 506 221 HOH HOH . H 5 HOH A 7 507 103 HOH HOH . H 5 HOH A 8 508 148 HOH HOH . H 5 HOH A 9 509 171 HOH HOH . H 5 HOH A 10 510 101 HOH HOH . H 5 HOH A 11 511 44 HOH HOH . H 5 HOH A 12 512 122 HOH HOH . H 5 HOH A 13 513 75 HOH HOH . H 5 HOH A 14 514 149 HOH HOH . H 5 HOH A 15 515 48 HOH HOH . H 5 HOH A 16 516 68 HOH HOH . H 5 HOH A 17 517 147 HOH HOH . H 5 HOH A 18 518 26 HOH HOH . H 5 HOH A 19 519 126 HOH HOH . H 5 HOH A 20 520 11 HOH HOH . H 5 HOH A 21 521 184 HOH HOH . H 5 HOH A 22 522 143 HOH HOH . H 5 HOH A 23 523 45 HOH HOH . H 5 HOH A 24 524 66 HOH HOH . H 5 HOH A 25 525 85 HOH HOH . H 5 HOH A 26 526 34 HOH HOH . H 5 HOH A 27 527 76 HOH HOH . H 5 HOH A 28 528 64 HOH HOH . H 5 HOH A 29 529 99 HOH HOH . H 5 HOH A 30 530 217 HOH HOH . H 5 HOH A 31 531 12 HOH HOH . H 5 HOH A 32 532 46 HOH HOH . H 5 HOH A 33 533 1 HOH HOH . H 5 HOH A 34 534 56 HOH HOH . H 5 HOH A 35 535 39 HOH HOH . H 5 HOH A 36 536 106 HOH HOH . H 5 HOH A 37 537 102 HOH HOH . H 5 HOH A 38 538 29 HOH HOH . H 5 HOH A 39 539 57 HOH HOH . H 5 HOH A 40 540 194 HOH HOH . H 5 HOH A 41 541 59 HOH HOH . H 5 HOH A 42 542 21 HOH HOH . H 5 HOH A 43 543 132 HOH HOH . H 5 HOH A 44 544 50 HOH HOH . H 5 HOH A 45 545 82 HOH HOH . H 5 HOH A 46 546 72 HOH HOH . H 5 HOH A 47 547 137 HOH HOH . H 5 HOH A 48 548 160 HOH HOH . H 5 HOH A 49 549 70 HOH HOH . H 5 HOH A 50 550 23 HOH HOH . H 5 HOH A 51 551 159 HOH HOH . H 5 HOH A 52 552 24 HOH HOH . H 5 HOH A 53 553 14 HOH HOH . H 5 HOH A 54 554 9 HOH HOH . H 5 HOH A 55 555 73 HOH HOH . H 5 HOH A 56 556 112 HOH HOH . H 5 HOH A 57 557 35 HOH HOH . H 5 HOH A 58 558 123 HOH HOH . H 5 HOH A 59 559 174 HOH HOH . H 5 HOH A 60 560 136 HOH HOH . H 5 HOH A 61 561 83 HOH HOH . H 5 HOH A 62 562 8 HOH HOH . H 5 HOH A 63 563 233 HOH HOH . H 5 HOH A 64 564 154 HOH HOH . H 5 HOH A 65 565 2 HOH HOH . H 5 HOH A 66 566 16 HOH HOH . H 5 HOH A 67 567 142 HOH HOH . H 5 HOH A 68 568 79 HOH HOH . H 5 HOH A 69 569 53 HOH HOH . H 5 HOH A 70 570 116 HOH HOH . H 5 HOH A 71 571 210 HOH HOH . H 5 HOH A 72 572 67 HOH HOH . H 5 HOH A 73 573 187 HOH HOH . H 5 HOH A 74 574 17 HOH HOH . H 5 HOH A 75 575 54 HOH HOH . H 5 HOH A 76 576 98 HOH HOH . H 5 HOH A 77 577 4 HOH HOH . H 5 HOH A 78 578 90 HOH HOH . H 5 HOH A 79 579 190 HOH HOH . H 5 HOH A 80 580 223 HOH HOH . H 5 HOH A 81 581 121 HOH HOH . H 5 HOH A 82 582 155 HOH HOH . H 5 HOH A 83 583 200 HOH HOH . H 5 HOH A 84 584 222 HOH HOH . H 5 HOH A 85 585 51 HOH HOH . H 5 HOH A 86 586 94 HOH HOH . H 5 HOH A 87 587 225 HOH HOH . H 5 HOH A 88 588 212 HOH HOH . H 5 HOH A 89 589 97 HOH HOH . H 5 HOH A 90 590 114 HOH HOH . H 5 HOH A 91 591 234 HOH HOH . H 5 HOH A 92 592 156 HOH HOH . H 5 HOH A 93 593 224 HOH HOH . H 5 HOH A 94 594 109 HOH HOH . H 5 HOH A 95 595 118 HOH HOH . H 5 HOH A 96 596 30 HOH HOH . H 5 HOH A 97 597 95 HOH HOH . H 5 HOH A 98 598 91 HOH HOH . H 5 HOH A 99 599 42 HOH HOH . H 5 HOH A 100 600 176 HOH HOH . H 5 HOH A 101 601 37 HOH HOH . H 5 HOH A 102 602 81 HOH HOH . H 5 HOH A 103 603 205 HOH HOH . H 5 HOH A 104 604 69 HOH HOH . H 5 HOH A 105 605 220 HOH HOH . H 5 HOH A 106 606 188 HOH HOH . H 5 HOH A 107 607 87 HOH HOH . H 5 HOH A 108 608 55 HOH HOH . H 5 HOH A 109 609 22 HOH HOH . H 5 HOH A 110 610 92 HOH HOH . H 5 HOH A 111 611 60 HOH HOH . H 5 HOH A 112 612 218 HOH HOH . H 5 HOH A 113 613 213 HOH HOH . H 5 HOH A 114 614 215 HOH HOH . H 5 HOH A 115 615 125 HOH HOH . H 5 HOH A 116 616 124 HOH HOH . H 5 HOH A 117 617 104 HOH HOH . H 5 HOH A 118 618 100 HOH HOH . H 5 HOH A 119 619 179 HOH HOH . H 5 HOH A 120 620 133 HOH HOH . H 5 HOH A 121 621 128 HOH HOH . H 5 HOH A 122 622 186 HOH HOH . H 5 HOH A 123 623 27 HOH HOH . H 5 HOH A 124 624 145 HOH HOH . H 5 HOH A 125 625 78 HOH HOH . H 5 HOH A 126 626 230 HOH HOH . H 5 HOH A 127 627 170 HOH HOH . H 5 HOH A 128 628 232 HOH HOH . H 5 HOH A 129 629 175 HOH HOH . H 5 HOH A 130 630 139 HOH HOH . H 5 HOH A 131 631 207 HOH HOH . H 5 HOH A 132 632 195 HOH HOH . H 5 HOH A 133 633 119 HOH HOH . H 5 HOH A 134 634 219 HOH HOH . H 5 HOH A 135 635 152 HOH HOH . H 5 HOH A 136 636 197 HOH HOH . I 5 HOH B 1 501 108 HOH HOH . I 5 HOH B 2 502 173 HOH HOH . I 5 HOH B 3 503 47 HOH HOH . I 5 HOH B 4 504 202 HOH HOH . I 5 HOH B 5 505 216 HOH HOH . I 5 HOH B 6 506 127 HOH HOH . I 5 HOH B 7 507 20 HOH HOH . I 5 HOH B 8 508 206 HOH HOH . I 5 HOH B 9 509 107 HOH HOH . I 5 HOH B 10 510 135 HOH HOH . I 5 HOH B 11 511 61 HOH HOH . I 5 HOH B 12 512 183 HOH HOH . I 5 HOH B 13 513 144 HOH HOH . I 5 HOH B 14 514 52 HOH HOH . I 5 HOH B 15 515 7 HOH HOH . I 5 HOH B 16 516 201 HOH HOH . I 5 HOH B 17 517 28 HOH HOH . I 5 HOH B 18 518 236 HOH HOH . I 5 HOH B 19 519 3 HOH HOH . I 5 HOH B 20 520 10 HOH HOH . I 5 HOH B 21 521 84 HOH HOH . I 5 HOH B 22 522 18 HOH HOH . I 5 HOH B 23 523 6 HOH HOH . I 5 HOH B 24 524 134 HOH HOH . I 5 HOH B 25 525 88 HOH HOH . I 5 HOH B 26 526 77 HOH HOH . I 5 HOH B 27 527 115 HOH HOH . I 5 HOH B 28 528 80 HOH HOH . I 5 HOH B 29 529 105 HOH HOH . I 5 HOH B 30 530 120 HOH HOH . I 5 HOH B 31 531 199 HOH HOH . I 5 HOH B 32 532 15 HOH HOH . I 5 HOH B 33 533 177 HOH HOH . I 5 HOH B 34 534 93 HOH HOH . I 5 HOH B 35 535 5 HOH HOH . I 5 HOH B 36 536 131 HOH HOH . I 5 HOH B 37 537 117 HOH HOH . I 5 HOH B 38 538 164 HOH HOH . I 5 HOH B 39 539 40 HOH HOH . I 5 HOH B 40 540 36 HOH HOH . I 5 HOH B 41 541 228 HOH HOH . I 5 HOH B 42 542 150 HOH HOH . I 5 HOH B 43 543 41 HOH HOH . I 5 HOH B 44 544 86 HOH HOH . I 5 HOH B 45 545 43 HOH HOH . I 5 HOH B 46 546 158 HOH HOH . I 5 HOH B 47 547 74 HOH HOH . I 5 HOH B 48 548 33 HOH HOH . I 5 HOH B 49 549 192 HOH HOH . I 5 HOH B 50 550 31 HOH HOH . I 5 HOH B 51 551 211 HOH HOH . I 5 HOH B 52 552 214 HOH HOH . I 5 HOH B 53 553 19 HOH HOH . I 5 HOH B 54 554 38 HOH HOH . I 5 HOH B 55 555 151 HOH HOH . I 5 HOH B 56 556 178 HOH HOH . I 5 HOH B 57 557 157 HOH HOH . I 5 HOH B 58 558 191 HOH HOH . I 5 HOH B 59 559 189 HOH HOH . I 5 HOH B 60 560 209 HOH HOH . I 5 HOH B 61 561 96 HOH HOH . I 5 HOH B 62 562 146 HOH HOH . I 5 HOH B 63 563 229 HOH HOH . I 5 HOH B 64 564 153 HOH HOH . I 5 HOH B 65 565 141 HOH HOH . I 5 HOH B 66 566 182 HOH HOH . I 5 HOH B 67 567 163 HOH HOH . I 5 HOH B 68 568 32 HOH HOH . I 5 HOH B 69 569 89 HOH HOH . I 5 HOH B 70 570 71 HOH HOH . I 5 HOH B 71 571 58 HOH HOH . I 5 HOH B 72 572 129 HOH HOH . I 5 HOH B 73 573 49 HOH HOH . I 5 HOH B 74 574 172 HOH HOH . I 5 HOH B 75 575 162 HOH HOH . I 5 HOH B 76 576 63 HOH HOH . I 5 HOH B 77 577 181 HOH HOH . I 5 HOH B 78 578 169 HOH HOH . I 5 HOH B 79 579 138 HOH HOH . I 5 HOH B 80 580 203 HOH HOH . I 5 HOH B 81 581 113 HOH HOH . I 5 HOH B 82 582 168 HOH HOH . I 5 HOH B 83 583 25 HOH HOH . I 5 HOH B 84 584 204 HOH HOH . I 5 HOH B 85 585 111 HOH HOH . I 5 HOH B 86 586 161 HOH HOH . I 5 HOH B 87 587 208 HOH HOH . I 5 HOH B 88 588 226 HOH HOH . I 5 HOH B 89 589 166 HOH HOH . I 5 HOH B 90 590 193 HOH HOH . I 5 HOH B 91 591 62 HOH HOH . I 5 HOH B 92 592 165 HOH HOH . I 5 HOH B 93 593 235 HOH HOH . I 5 HOH B 94 594 227 HOH HOH . I 5 HOH B 95 595 167 HOH HOH . I 5 HOH B 96 596 180 HOH HOH . I 5 HOH B 97 597 196 HOH HOH . I 5 HOH B 98 598 140 HOH HOH . I 5 HOH B 99 599 185 HOH HOH . I 5 HOH B 100 600 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 4.844 15.596 -19.818 1 73.31 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . E 2 6.161 15.542 -19.334 1 73 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . E 2 3.911 15.531 -18.588 1 72.65 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . E 2 4.596 15.717 -17.366 1 71.95 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . E 2 2.854 16.609 -18.89 1 69.47 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . E 2 1.715 16.272 -18.159 1 65.2 ? O3 GOL 401 B 1 HETATM 7 H H11 GOL . . . E 2 4.636 14.863 -20.419 1 88.18 ? H11 GOL 401 B 1 HETATM 8 H H12 GOL . . . E 2 4.662 16.408 -20.317 1 88.18 ? H12 GOL 401 B 1 HETATM 9 H HO1 GOL . . . E 2 6.672 15.673 -20.008 1 87.81 ? HO1 GOL 401 B 1 HETATM 10 H H2 GOL . . . E 2 3.504 14.656 -18.489 1 87.38 ? H2 GOL 401 B 1 HETATM 11 H HO2 GOL . . . E 2 4.372 15.099 -16.861 1 86.55 ? HO2 GOL 401 B 1 HETATM 12 H H31 GOL . . . E 2 2.702 16.64 -19.848 1 83.58 ? H31 GOL 401 B 1 HETATM 13 H H32 GOL . . . E 2 3.217 17.478 -18.66 1 83.58 ? H32 GOL 401 B 1 HETATM 14 H HO3 GOL . . . E 2 1.679 16.792 -17.49 1 78.45 ? HO3 GOL 401 B 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #