data_6Y03 # _model_server_result.job_id swUADx8YIZfDCLvYBN_aVA _model_server_result.datetime_utc '2025-02-20 10:53:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y03 # _exptl.entry_id 6Y03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.262 _cell.angle_gamma 90 _cell.entry_id 6Y03 _cell.length_a 47.032 _cell.length_b 66.373 _cell.length_c 49.034 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6Y03 _atom_sites.fract_transf_matrix[1][1] 0.021262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 401 1 CIT CIT . C 3 NAP A 1 402 1 NAP XXX . D 4 HOH A 1 501 248 HOH HOH . D 4 HOH A 2 502 15 HOH HOH . D 4 HOH A 3 503 203 HOH HOH . D 4 HOH A 4 504 100 HOH HOH . D 4 HOH A 5 505 222 HOH HOH . D 4 HOH A 6 506 115 HOH HOH . D 4 HOH A 7 507 186 HOH HOH . D 4 HOH A 8 508 148 HOH HOH . D 4 HOH A 9 509 205 HOH HOH . D 4 HOH A 10 510 34 HOH HOH . D 4 HOH A 11 511 103 HOH HOH . D 4 HOH A 12 512 125 HOH HOH . D 4 HOH A 13 513 124 HOH HOH . D 4 HOH A 14 514 181 HOH HOH . D 4 HOH A 15 515 17 HOH HOH . D 4 HOH A 16 516 85 HOH HOH . D 4 HOH A 17 517 123 HOH HOH . D 4 HOH A 18 518 76 HOH HOH . D 4 HOH A 19 519 62 HOH HOH . D 4 HOH A 20 520 58 HOH HOH . D 4 HOH A 21 521 101 HOH HOH . D 4 HOH A 22 522 120 HOH HOH . D 4 HOH A 23 523 228 HOH HOH . D 4 HOH A 24 524 231 HOH HOH . D 4 HOH A 25 525 77 HOH HOH . D 4 HOH A 26 526 151 HOH HOH . D 4 HOH A 27 527 174 HOH HOH . D 4 HOH A 28 528 117 HOH HOH . D 4 HOH A 29 529 21 HOH HOH . D 4 HOH A 30 530 56 HOH HOH . D 4 HOH A 31 531 197 HOH HOH . D 4 HOH A 32 532 254 HOH HOH . D 4 HOH A 33 533 185 HOH HOH . D 4 HOH A 34 534 49 HOH HOH . D 4 HOH A 35 535 149 HOH HOH . D 4 HOH A 36 536 87 HOH HOH . D 4 HOH A 37 537 270 HOH HOH . D 4 HOH A 38 538 258 HOH HOH . D 4 HOH A 39 539 241 HOH HOH . D 4 HOH A 40 540 95 HOH HOH . D 4 HOH A 41 541 11 HOH HOH . D 4 HOH A 42 542 153 HOH HOH . D 4 HOH A 43 543 40 HOH HOH . D 4 HOH A 44 544 233 HOH HOH . D 4 HOH A 45 545 146 HOH HOH . D 4 HOH A 46 546 109 HOH HOH . D 4 HOH A 47 547 68 HOH HOH . D 4 HOH A 48 548 250 HOH HOH . D 4 HOH A 49 549 97 HOH HOH . D 4 HOH A 50 550 139 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 158 HOH HOH . D 4 HOH A 54 554 89 HOH HOH . D 4 HOH A 55 555 91 HOH HOH . D 4 HOH A 56 556 23 HOH HOH . D 4 HOH A 57 557 37 HOH HOH . D 4 HOH A 58 558 182 HOH HOH . D 4 HOH A 59 559 150 HOH HOH . D 4 HOH A 60 560 122 HOH HOH . D 4 HOH A 61 561 75 HOH HOH . D 4 HOH A 62 562 157 HOH HOH . D 4 HOH A 63 563 202 HOH HOH . D 4 HOH A 64 564 187 HOH HOH . D 4 HOH A 65 565 154 HOH HOH . D 4 HOH A 66 566 211 HOH HOH . D 4 HOH A 67 567 32 HOH HOH . D 4 HOH A 68 568 81 HOH HOH . D 4 HOH A 69 569 126 HOH HOH . D 4 HOH A 70 570 80 HOH HOH . D 4 HOH A 71 571 5 HOH HOH . D 4 HOH A 72 572 274 HOH HOH . D 4 HOH A 73 573 198 HOH HOH . D 4 HOH A 74 574 46 HOH HOH . D 4 HOH A 75 575 92 HOH HOH . D 4 HOH A 76 576 200 HOH HOH . D 4 HOH A 77 577 188 HOH HOH . D 4 HOH A 78 578 121 HOH HOH . D 4 HOH A 79 579 212 HOH HOH . D 4 HOH A 80 580 82 HOH HOH . D 4 HOH A 81 581 42 HOH HOH . D 4 HOH A 82 582 16 HOH HOH . D 4 HOH A 83 583 260 HOH HOH . D 4 HOH A 84 584 232 HOH HOH . D 4 HOH A 85 585 235 HOH HOH . D 4 HOH A 86 586 210 HOH HOH . D 4 HOH A 87 587 132 HOH HOH . D 4 HOH A 88 588 206 HOH HOH . D 4 HOH A 89 589 41 HOH HOH . D 4 HOH A 90 590 66 HOH HOH . D 4 HOH A 91 591 36 HOH HOH . D 4 HOH A 92 592 33 HOH HOH . D 4 HOH A 93 593 106 HOH HOH . D 4 HOH A 94 594 249 HOH HOH . D 4 HOH A 95 595 273 HOH HOH . D 4 HOH A 96 596 47 HOH HOH . D 4 HOH A 97 597 54 HOH HOH . D 4 HOH A 98 598 225 HOH HOH . D 4 HOH A 99 599 78 HOH HOH . D 4 HOH A 100 600 2 HOH HOH . D 4 HOH A 101 601 266 HOH HOH . D 4 HOH A 102 602 195 HOH HOH . D 4 HOH A 103 603 234 HOH HOH . D 4 HOH A 104 604 133 HOH HOH . D 4 HOH A 105 605 61 HOH HOH . D 4 HOH A 106 606 175 HOH HOH . D 4 HOH A 107 607 43 HOH HOH . D 4 HOH A 108 608 98 HOH HOH . D 4 HOH A 109 609 94 HOH HOH . D 4 HOH A 110 610 176 HOH HOH . D 4 HOH A 111 611 268 HOH HOH . D 4 HOH A 112 612 48 HOH HOH . D 4 HOH A 113 613 246 HOH HOH . D 4 HOH A 114 614 12 HOH HOH . D 4 HOH A 115 615 35 HOH HOH . D 4 HOH A 116 616 53 HOH HOH . D 4 HOH A 117 617 14 HOH HOH . D 4 HOH A 118 618 63 HOH HOH . D 4 HOH A 119 619 276 HOH HOH . D 4 HOH A 120 620 164 HOH HOH . D 4 HOH A 121 621 143 HOH HOH . D 4 HOH A 122 622 31 HOH HOH . D 4 HOH A 123 623 60 HOH HOH . D 4 HOH A 124 624 265 HOH HOH . D 4 HOH A 125 625 255 HOH HOH . D 4 HOH A 126 626 208 HOH HOH . D 4 HOH A 127 627 24 HOH HOH . D 4 HOH A 128 628 20 HOH HOH . D 4 HOH A 129 629 245 HOH HOH . D 4 HOH A 130 630 170 HOH HOH . D 4 HOH A 131 631 88 HOH HOH . D 4 HOH A 132 632 136 HOH HOH . D 4 HOH A 133 633 71 HOH HOH . D 4 HOH A 134 634 67 HOH HOH . D 4 HOH A 135 635 116 HOH HOH . D 4 HOH A 136 636 156 HOH HOH . D 4 HOH A 137 637 64 HOH HOH . D 4 HOH A 138 638 13 HOH HOH . D 4 HOH A 139 639 183 HOH HOH . D 4 HOH A 140 640 184 HOH HOH . D 4 HOH A 141 641 70 HOH HOH . D 4 HOH A 142 642 18 HOH HOH . D 4 HOH A 143 643 8 HOH HOH . D 4 HOH A 144 644 140 HOH HOH . D 4 HOH A 145 645 39 HOH HOH . D 4 HOH A 146 646 168 HOH HOH . D 4 HOH A 147 647 173 HOH HOH . D 4 HOH A 148 648 44 HOH HOH . D 4 HOH A 149 649 144 HOH HOH . D 4 HOH A 150 650 147 HOH HOH . D 4 HOH A 151 651 25 HOH HOH . D 4 HOH A 152 652 199 HOH HOH . D 4 HOH A 153 653 73 HOH HOH . D 4 HOH A 154 654 163 HOH HOH . D 4 HOH A 155 655 134 HOH HOH . D 4 HOH A 156 656 114 HOH HOH . D 4 HOH A 157 657 45 HOH HOH . D 4 HOH A 158 658 159 HOH HOH . D 4 HOH A 159 659 127 HOH HOH . D 4 HOH A 160 660 179 HOH HOH . D 4 HOH A 161 661 96 HOH HOH . D 4 HOH A 162 662 180 HOH HOH . D 4 HOH A 163 663 59 HOH HOH . D 4 HOH A 164 664 38 HOH HOH . D 4 HOH A 165 665 119 HOH HOH . D 4 HOH A 166 666 93 HOH HOH . D 4 HOH A 167 667 275 HOH HOH . D 4 HOH A 168 668 6 HOH HOH . D 4 HOH A 169 669 50 HOH HOH . D 4 HOH A 170 670 145 HOH HOH . D 4 HOH A 171 671 194 HOH HOH . D 4 HOH A 172 672 217 HOH HOH . D 4 HOH A 173 673 108 HOH HOH . D 4 HOH A 174 674 90 HOH HOH . D 4 HOH A 175 675 167 HOH HOH . D 4 HOH A 176 676 69 HOH HOH . D 4 HOH A 177 677 72 HOH HOH . D 4 HOH A 178 678 111 HOH HOH . D 4 HOH A 179 679 130 HOH HOH . D 4 HOH A 180 680 257 HOH HOH . D 4 HOH A 181 681 105 HOH HOH . D 4 HOH A 182 682 239 HOH HOH . D 4 HOH A 183 683 110 HOH HOH . D 4 HOH A 184 684 99 HOH HOH . D 4 HOH A 185 685 84 HOH HOH . D 4 HOH A 186 686 262 HOH HOH . D 4 HOH A 187 687 216 HOH HOH . D 4 HOH A 188 688 166 HOH HOH . D 4 HOH A 189 689 207 HOH HOH . D 4 HOH A 190 690 65 HOH HOH . D 4 HOH A 191 691 128 HOH HOH . D 4 HOH A 192 692 155 HOH HOH . D 4 HOH A 193 693 161 HOH HOH . D 4 HOH A 194 694 169 HOH HOH . D 4 HOH A 195 695 272 HOH HOH . D 4 HOH A 196 696 223 HOH HOH . D 4 HOH A 197 697 237 HOH HOH . D 4 HOH A 198 698 256 HOH HOH . D 4 HOH A 199 699 279 HOH HOH . D 4 HOH A 200 700 201 HOH HOH . D 4 HOH A 201 701 238 HOH HOH . D 4 HOH A 202 702 135 HOH HOH . D 4 HOH A 203 703 79 HOH HOH . D 4 HOH A 204 704 226 HOH HOH . D 4 HOH A 205 705 214 HOH HOH . D 4 HOH A 206 706 22 HOH HOH . D 4 HOH A 207 707 107 HOH HOH . D 4 HOH A 208 708 227 HOH HOH . D 4 HOH A 209 709 113 HOH HOH . D 4 HOH A 210 710 271 HOH HOH . D 4 HOH A 211 711 224 HOH HOH . D 4 HOH A 212 712 219 HOH HOH . D 4 HOH A 213 713 118 HOH HOH . D 4 HOH A 214 714 57 HOH HOH . D 4 HOH A 215 715 252 HOH HOH . D 4 HOH A 216 716 247 HOH HOH . D 4 HOH A 217 717 196 HOH HOH . D 4 HOH A 218 718 129 HOH HOH . D 4 HOH A 219 719 242 HOH HOH . D 4 HOH A 220 720 165 HOH HOH . D 4 HOH A 221 721 261 HOH HOH . D 4 HOH A 222 722 244 HOH HOH . D 4 HOH A 223 723 27 HOH HOH . D 4 HOH A 224 724 213 HOH HOH . D 4 HOH A 225 725 141 HOH HOH . D 4 HOH A 226 726 209 HOH HOH . D 4 HOH A 227 727 138 HOH HOH . D 4 HOH A 228 728 264 HOH HOH . D 4 HOH A 229 729 55 HOH HOH . D 4 HOH A 230 730 277 HOH HOH . D 4 HOH A 231 731 189 HOH HOH . D 4 HOH A 232 732 86 HOH HOH . D 4 HOH A 233 733 278 HOH HOH . D 4 HOH A 234 734 137 HOH HOH . D 4 HOH A 235 735 162 HOH HOH . D 4 HOH A 236 736 28 HOH HOH . D 4 HOH A 237 737 230 HOH HOH . D 4 HOH A 238 738 220 HOH HOH . D 4 HOH A 239 739 190 HOH HOH . D 4 HOH A 240 740 240 HOH HOH . D 4 HOH A 241 741 267 HOH HOH . D 4 HOH A 242 742 215 HOH HOH . D 4 HOH A 243 743 191 HOH HOH . D 4 HOH A 244 744 259 HOH HOH . D 4 HOH A 245 745 243 HOH HOH . D 4 HOH A 246 746 204 HOH HOH . D 4 HOH A 247 747 251 HOH HOH . D 4 HOH A 248 748 229 HOH HOH . D 4 HOH A 249 749 112 HOH HOH . D 4 HOH A 250 750 263 HOH HOH . D 4 HOH A 251 751 221 HOH HOH . D 4 HOH A 252 752 83 HOH HOH . D 4 HOH A 253 753 269 HOH HOH . D 4 HOH A 254 754 236 HOH HOH . D 4 HOH A 255 755 253 HOH HOH . D 4 HOH A 256 756 192 HOH HOH . D 4 HOH A 257 757 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . A . B 2 85.424 7.147 18.296 0.62 34.82 ? C1 CIT 401 A 1 HETATM 2 C C1 CIT . B . B 2 86.086 9.434 16.213 0.38 34.39 ? C1 CIT 401 A 1 HETATM 3 O O1 CIT . A . B 2 84.583 7.092 17.371 0.62 34.86 ? O1 CIT 401 A 1 HETATM 4 O O1 CIT . B . B 2 86.633 10.402 15.64 0.38 34.06 ? O1 CIT 401 A 1 HETATM 5 O O2 CIT . A . B 2 85.018 7.217 19.478 0.62 36.17 ? O2 CIT 401 A 1 HETATM 6 O O2 CIT . B . B 2 84.845 9.458 16.366 0.38 34.12 ? O2 CIT 401 A 1 HETATM 7 C C2 CIT . A . B 2 86.913 7.121 18.005 0.62 33.84 ? C2 CIT 401 A 1 HETATM 8 C C2 CIT . B . B 2 86.916 8.269 16.707 0.38 33.96 ? C2 CIT 401 A 1 HETATM 9 C C3 CIT . A . B 2 87.235 6.861 16.532 0.62 33.39 ? C3 CIT 401 A 1 HETATM 10 C C3 CIT . B . B 2 86.235 6.936 16.4 0.38 33.81 ? C3 CIT 401 A 1 HETATM 11 O O7 CIT . A . B 2 86.421 5.791 16.003 0.62 33 ? O7 CIT 401 A 1 HETATM 12 O O7 CIT . B . B 2 85.922 6.918 14.989 0.38 33.45 ? O7 CIT 401 A 1 HETATM 13 C C4 CIT . A . B 2 87.077 8.084 15.626 0.62 34.08 ? C4 CIT 401 A 1 HETATM 14 C C4 CIT . B . B 2 87.106 5.723 16.693 0.38 33 ? C4 CIT 401 A 1 HETATM 15 C C5 CIT . A . B 2 86.499 9.27 16.35 0.62 34.34 ? C5 CIT 401 A 1 HETATM 16 C C5 CIT . B . B 2 88.564 6.063 16.518 0.38 32.52 ? C5 CIT 401 A 1 HETATM 17 O O3 CIT . A . B 2 85.385 9.733 16.007 0.62 34.53 ? O3 CIT 401 A 1 HETATM 18 O O3 CIT . B . B 2 89.149 6.734 17.394 0.38 32.98 ? O3 CIT 401 A 1 HETATM 19 O O4 CIT . A . B 2 87.128 9.801 17.294 0.62 34.67 ? O4 CIT 401 A 1 HETATM 20 O O4 CIT . B . B 2 89.203 5.662 15.526 0.38 31.99 ? O4 CIT 401 A 1 HETATM 21 C C6 CIT . A . B 2 88.675 6.39 16.448 0.62 32.49 ? C6 CIT 401 A 1 HETATM 22 C C6 CIT . B . B 2 84.936 6.801 17.183 0.38 34.36 ? C6 CIT 401 A 1 HETATM 23 O O5 CIT . A . B 2 89.039 5.534 15.621 0.62 31.62 ? O5 CIT 401 A 1 HETATM 24 O O5 CIT . B . B 2 83.862 7.217 16.704 0.38 35.12 ? O5 CIT 401 A 1 HETATM 25 O O6 CIT . A . B 2 89.519 6.844 17.247 0.62 33.28 ? O6 CIT 401 A 1 HETATM 26 O O6 CIT . B . B 2 84.932 6.285 18.326 0.38 34.53 ? O6 CIT 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 26 #