data_6Y0O # _model_server_result.job_id lXISTD1WRRP-6aYL-h3kAw _model_server_result.datetime_utc '2024-11-12 23:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6Y0O # _exptl.entry_id 6Y0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.43 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y0O _cell.length_a 41.889 _cell.length_b 75.797 _cell.length_c 102.034 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 214 A HIS 214 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 A OD1 ASP 216 A ASP 216 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc3 A NE2 HIS 270 A HIS 270 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 D S17 ACV . A ACV 403 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc5 E FE FE . A FE 404 1_555 F O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C14 H25 N3 O6 S' _chem_comp.formula_weight 363.43 _chem_comp.id ACV _chem_comp.mon_nstd_flag . _chem_comp.name L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACV sing 1 n n C1 O19 ACV sing 2 n n C1 O20 ACV doub 3 n n C2 C3 ACV sing 4 n n C2 N14 ACV sing 5 n n C2 H2 ACV sing 6 n n C3 C4 ACV sing 7 n n C3 H31 ACV sing 8 n n C3 H32A ACV sing 9 n n C4 C7 ACV sing 10 n n C4 H41 ACV sing 11 n n C4 H42 ACV sing 12 n n C7 C10 ACV sing 13 n n C7 H71 ACV sing 14 n n C7 H72 ACV sing 15 n n C10 N11 ACV sing 16 n n C10 O15 ACV doub 17 n n N11 C12 ACV sing 18 n n N11 HNB ACV sing 19 n n C12 C13 ACV sing 20 n n C12 C16 ACV sing 21 n n C12 H12 ACV sing 22 n n C13 O18 ACV doub 23 n n C13 N29 ACV sing 24 n n N14 HNE1 ACV sing 25 n n N14 HNE2 ACV sing 26 n n C16 S17 ACV sing 27 n n C16 H161 ACV sing 28 n n C16 H162 ACV sing 29 n n S17 HS7 ACV sing 30 n n O19 HOJ ACV sing 31 n n N29 C30 ACV sing 32 n n N29 HNT ACV sing 33 n n C30 C31 ACV sing 34 n n C30 C32 ACV sing 35 n n C30 H30 ACV sing 36 n n C31 O42 ACV doub 37 n n C31 O43 ACV sing 38 n n C32 C33 ACV sing 39 n n C32 C37 ACV sing 40 n n C32 H32 ACV sing 41 n n C33 H331 ACV sing 42 n n C33 H332 ACV sing 43 n n C33 H333 ACV sing 44 n n C37 H371 ACV sing 45 n n C37 H372 ACV sing 46 n n C37 H373 ACV sing 47 n n O43 HO ACV sing 48 n n # _atom_sites.entry_id 6Y0O _atom_sites.fract_transf_matrix[1][1] 0.023873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 ACV A 1 403 1 ACV ACV . E 4 FE A 1 404 1 FE FE . F 5 HOH A 1 501 116 HOH HOH . F 5 HOH A 2 502 31 HOH HOH . F 5 HOH A 3 503 111 HOH HOH . F 5 HOH A 4 504 37 HOH HOH . F 5 HOH A 5 505 3 HOH HOH . F 5 HOH A 6 506 25 HOH HOH . F 5 HOH A 7 507 50 HOH HOH . F 5 HOH A 8 508 39 HOH HOH . F 5 HOH A 9 509 71 HOH HOH . F 5 HOH A 10 510 15 HOH HOH . F 5 HOH A 11 511 58 HOH HOH . F 5 HOH A 12 512 34 HOH HOH . F 5 HOH A 13 513 102 HOH HOH . F 5 HOH A 14 514 90 HOH HOH . F 5 HOH A 15 515 91 HOH HOH . F 5 HOH A 16 516 44 HOH HOH . F 5 HOH A 17 517 11 HOH HOH . F 5 HOH A 18 518 21 HOH HOH . F 5 HOH A 19 519 1 HOH HOH . F 5 HOH A 20 520 30 HOH HOH . F 5 HOH A 21 521 28 HOH HOH . F 5 HOH A 22 522 16 HOH HOH . F 5 HOH A 23 523 46 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 61 HOH HOH . F 5 HOH A 26 526 6 HOH HOH . F 5 HOH A 27 527 93 HOH HOH . F 5 HOH A 28 528 42 HOH HOH . F 5 HOH A 29 529 88 HOH HOH . F 5 HOH A 30 530 18 HOH HOH . F 5 HOH A 31 531 27 HOH HOH . F 5 HOH A 32 532 2 HOH HOH . F 5 HOH A 33 533 103 HOH HOH . F 5 HOH A 34 534 122 HOH HOH . F 5 HOH A 35 535 22 HOH HOH . F 5 HOH A 36 536 8 HOH HOH . F 5 HOH A 37 537 82 HOH HOH . F 5 HOH A 38 538 86 HOH HOH . F 5 HOH A 39 539 7 HOH HOH . F 5 HOH A 40 540 33 HOH HOH . F 5 HOH A 41 541 69 HOH HOH . F 5 HOH A 42 542 87 HOH HOH . F 5 HOH A 43 543 26 HOH HOH . F 5 HOH A 44 544 4 HOH HOH . F 5 HOH A 45 545 14 HOH HOH . F 5 HOH A 46 546 65 HOH HOH . F 5 HOH A 47 547 41 HOH HOH . F 5 HOH A 48 548 72 HOH HOH . F 5 HOH A 49 549 56 HOH HOH . F 5 HOH A 50 550 9 HOH HOH . F 5 HOH A 51 551 67 HOH HOH . F 5 HOH A 52 552 51 HOH HOH . F 5 HOH A 53 553 5 HOH HOH . F 5 HOH A 54 554 53 HOH HOH . F 5 HOH A 55 555 10 HOH HOH . F 5 HOH A 56 556 84 HOH HOH . F 5 HOH A 57 557 101 HOH HOH . F 5 HOH A 58 558 12 HOH HOH . F 5 HOH A 59 559 43 HOH HOH . F 5 HOH A 60 560 89 HOH HOH . F 5 HOH A 61 561 13 HOH HOH . F 5 HOH A 62 562 29 HOH HOH . F 5 HOH A 63 563 48 HOH HOH . F 5 HOH A 64 564 96 HOH HOH . F 5 HOH A 65 565 17 HOH HOH . F 5 HOH A 66 566 35 HOH HOH . F 5 HOH A 67 567 38 HOH HOH . F 5 HOH A 68 568 36 HOH HOH . F 5 HOH A 69 569 23 HOH HOH . F 5 HOH A 70 570 97 HOH HOH . F 5 HOH A 71 571 77 HOH HOH . F 5 HOH A 72 572 100 HOH HOH . F 5 HOH A 73 573 64 HOH HOH . F 5 HOH A 74 574 70 HOH HOH . F 5 HOH A 75 575 68 HOH HOH . F 5 HOH A 76 576 75 HOH HOH . F 5 HOH A 77 577 107 HOH HOH . F 5 HOH A 78 578 115 HOH HOH . F 5 HOH A 79 579 40 HOH HOH . F 5 HOH A 80 580 47 HOH HOH . F 5 HOH A 81 581 121 HOH HOH . F 5 HOH A 82 582 74 HOH HOH . F 5 HOH A 83 583 73 HOH HOH . F 5 HOH A 84 584 94 HOH HOH . F 5 HOH A 85 585 76 HOH HOH . F 5 HOH A 86 586 98 HOH HOH . F 5 HOH A 87 587 55 HOH HOH . F 5 HOH A 88 588 79 HOH HOH . F 5 HOH A 89 589 57 HOH HOH . F 5 HOH A 90 590 62 HOH HOH . F 5 HOH A 91 591 105 HOH HOH . F 5 HOH A 92 592 20 HOH HOH . F 5 HOH A 93 593 19 HOH HOH . F 5 HOH A 94 594 66 HOH HOH . F 5 HOH A 95 595 59 HOH HOH . F 5 HOH A 96 596 63 HOH HOH . F 5 HOH A 97 597 54 HOH HOH . F 5 HOH A 98 598 52 HOH HOH . F 5 HOH A 99 599 83 HOH HOH . F 5 HOH A 100 600 104 HOH HOH . F 5 HOH A 101 601 119 HOH HOH . F 5 HOH A 102 602 49 HOH HOH . F 5 HOH A 103 603 112 HOH HOH . F 5 HOH A 104 604 120 HOH HOH . F 5 HOH A 105 605 109 HOH HOH . F 5 HOH A 106 606 92 HOH HOH . F 5 HOH A 107 607 81 HOH HOH . F 5 HOH A 108 608 32 HOH HOH . F 5 HOH A 109 609 114 HOH HOH . F 5 HOH A 110 610 118 HOH HOH . F 5 HOH A 111 611 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACV . . . D 3 -6.223 3.764 -8.966 1 23.61 ? C1 ACV 403 A 1 HETATM 2 C C2 ACV . . . D 3 -7.023 2.526 -9.368 1 23.55 ? C2 ACV 403 A 1 HETATM 3 C C3 ACV . . . D 3 -6.475 1.275 -8.626 1 25.29 ? C3 ACV 403 A 1 HETATM 4 C C4 ACV . . . D 3 -7.183 -0.014 -9.032 1 27.2 ? C4 ACV 403 A 1 HETATM 5 C C7 ACV . . . D 3 -6.464 -1.261 -8.536 1 27.43 ? C7 ACV 403 A 1 HETATM 6 C C10 ACV . . . D 3 -7.218 -2.536 -8.819 1 28.21 ? C10 ACV 403 A 1 HETATM 7 N N11 ACV . . . D 3 -7.975 -2.991 -7.816 1 27.38 ? N11 ACV 403 A 1 HETATM 8 C C12 ACV . . . D 3 -8.671 -4.265 -7.864 1 27.12 ? C12 ACV 403 A 1 HETATM 9 C C13 ACV . . . D 3 -10.173 -4.069 -7.668 1 26.51 ? C13 ACV 403 A 1 HETATM 10 N N14 ACV . . . D 3 -7.039 2.357 -10.832 1 21.86 ? N14 ACV 403 A 1 HETATM 11 O O15 ACV . . . D 3 -7.125 -3.115 -9.899 1 29.04 ? O15 ACV 403 A 1 HETATM 12 C C16 ACV . . . D 3 -8.157 -5.196 -6.774 1 27.77 ? C16 ACV 403 A 1 HETATM 13 S S17 ACV . . . D 3 -8.306 -4.515 -5.103 1 24.43 ? S17 ACV 403 A 1 HETATM 14 O O18 ACV . . . D 3 -10.638 -2.943 -7.507 1 29.41 ? O18 ACV 403 A 1 HETATM 15 O O19 ACV . . . D 3 -6.071 3.873 -7.68 1 23.65 ? O19 ACV 403 A 1 HETATM 16 O O20 ACV . . . D 3 -5.784 4.555 -9.775 1 24.08 ? O20 ACV 403 A 1 HETATM 17 N N29 ACV . . . D 3 -10.922 -5.177 -7.659 1 24.18 ? N29 ACV 403 A 1 HETATM 18 C C30 ACV . . . D 3 -12.338 -5.153 -7.336 1 28.57 ? C30 ACV 403 A 1 HETATM 19 C C31 ACV . . . D 3 -13.107 -6.102 -8.239 1 31.56 ? C31 ACV 403 A 1 HETATM 20 C C32 ACV . . . D 3 -12.584 -5.481 -5.851 1 32.97 ? C32 ACV 403 A 1 HETATM 21 C C33 ACV . . . D 3 -11.714 -6.638 -5.38 1 34.21 ? C33 ACV 403 A 1 HETATM 22 C C37 ACV . . . D 3 -12.378 -4.258 -4.97 1 35.16 ? C37 ACV 403 A 1 HETATM 23 O O42 ACV . . . D 3 -14.263 -6.414 -8.025 1 36.49 ? O42 ACV 403 A 1 HETATM 24 O O43 ACV . . . D 3 -12.404 -6.531 -9.252 1 29.87 ? O43 ACV 403 A 1 HETATM 25 H H2 ACV . . . D 3 -8.059 2.676 -9.068 1 28.26 ? H2 ACV 403 A 1 HETATM 26 H H31 ACV . . . D 3 -5.407 1.183 -8.819 1 30.35 ? H31 ACV 403 A 1 HETATM 27 H H32A ACV . . . D 3 -6.551 1.431 -7.551 1 30.35 ? H32A ACV 403 A 1 HETATM 28 H H41 ACV . . . D 3 -8.204 -0.034 -8.654 1 32.64 ? H41 ACV 403 A 1 HETATM 29 H H42 ACV . . . D 3 -7.29 -0.059 -10.115 1 32.64 ? H42 ACV 403 A 1 HETATM 30 H H71 ACV . . . D 3 -5.49 -1.344 -9.015 1 32.92 ? H71 ACV 403 A 1 HETATM 31 H H72 ACV . . . D 3 -6.241 -1.134 -7.478 1 32.92 ? H72 ACV 403 A 1 HETATM 32 H HNB ACV . . . D 3 -8.102 -2.459 -6.961 1 32.86 ? HNB ACV 403 A 1 HETATM 33 H H12 ACV . . . D 3 -8.479 -4.739 -8.826 1 32.54 ? H12 ACV 403 A 1 HETATM 34 H HNE1 ACV . . . D 3 -7.971 2.303 -11.231 1 26.23 ? HNE1 ACV 403 A 1 HETATM 35 H HNE2 ACV . . . D 3 -6.449 3.018 -11.327 1 26.23 ? HNE2 ACV 403 A 1 HETATM 36 H H161 ACV . . . D 3 -8.673 -6.154 -6.813 1 33.32 ? H161 ACV 403 A 1 HETATM 37 H H162 ACV . . . D 3 -7.106 -5.421 -6.948 1 33.32 ? H162 ACV 403 A 1 HETATM 38 H HS7 ACV . . . D 3 -7.008 -4.56 -4.782 1 29.31 ? HS7 ACV 403 A 1 HETATM 39 H HOJ ACV . . . D 3 -5.549 4.683 -7.441 1 28.38 ? HOJ ACV 403 A 1 HETATM 40 H HNT ACV . . . D 3 -10.519 -6.082 -7.879 1 29.01 ? HNT ACV 403 A 1 HETATM 41 H H30 ACV . . . D 3 -12.746 -4.16 -7.519 1 34.29 ? H30 ACV 403 A 1 HETATM 42 H H32 ACV . . . D 3 -13.626 -5.784 -5.761 1 39.56 ? H32 ACV 403 A 1 HETATM 43 H H331 ACV . . . D 3 -11.891 -6.866 -4.33 1 41.06 ? H331 ACV 403 A 1 HETATM 44 H H332 ACV . . . D 3 -10.65 -6.425 -5.477 1 41.06 ? H332 ACV 403 A 1 HETATM 45 H H333 ACV . . . D 3 -11.899 -7.557 -5.936 1 41.06 ? H333 ACV 403 A 1 HETATM 46 H H371 ACV . . . D 3 -12.545 -4.459 -3.913 1 42.19 ? H371 ACV 403 A 1 HETATM 47 H H372 ACV . . . D 3 -13.009 -3.412 -5.236 1 42.19 ? H372 ACV 403 A 1 HETATM 48 H H373 ACV . . . D 3 -11.354 -3.894 -5.042 1 42.19 ? H373 ACV 403 A 1 HETATM 49 H HO ACV . . . D 3 -12.924 -7.149 -9.829 1 35.85 ? HO ACV 403 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #