data_6Y0P
#
_model_server_result.job_id            VQXSR0ih6PMWu62NDqbqAQ 
_model_server_result.datetime_utc      '2024-11-24 16:01:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6Y0P 
#
_exptl.entry_id    6Y0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              359.398 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOPENICILLIN N' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y0P 
_cell.length_a            41.766 
_cell.length_b            75.231 
_cell.length_c            101.82 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 214 A HIS 214 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc2 A OD1 ASP 216 A ASP 216 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc3 A NE2 HIS 270 A HIS 270 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 D FE FE . A FE 403 1_555 E O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
#
_chem_comp.formula           'C14 H21 N3 O6 S' 
_chem_comp.formula_weight    359.398 
_chem_comp.id                IP1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOPENICILLIN N' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IP1 sing 173 n n 
C1 O19 IP1 sing 174 n n 
C1 O20 IP1 doub 175 n n 
C2 C3 IP1 sing 176 n n 
C2 N14 IP1 sing 177 n n 
C2 H2 IP1 sing 178 n n 
C3 C4 IP1 sing 179 n n 
C3 H32 IP1 sing 180 n n 
C3 H31 IP1 sing 181 n n 
C4 C7 IP1 sing 182 n n 
C4 H42A IP1 sing 183 n n 
C4 H41 IP1 sing 184 n n 
C7 C10 IP1 sing 185 n n 
C7 H72 IP1 sing 186 n n 
C7 H71 IP1 sing 187 n n 
C10 N11 IP1 sing 188 n n 
C10 O15 IP1 doub 189 n n 
N11 C12 IP1 sing 190 n n 
N11 H11 IP1 sing 191 n n 
C12 C13 IP1 sing 192 n n 
C12 C16 IP1 sing 193 n n 
C12 H12 IP1 sing 194 n n 
C13 O18 IP1 doub 195 n n 
C13 N29 IP1 sing 196 n n 
N14 H142 IP1 sing 197 n n 
N14 H141 IP1 sing 198 n n 
C16 S17 IP1 sing 199 n n 
C16 N29 IP1 sing 200 n n 
C16 H16 IP1 sing 201 n n 
S17 C32 IP1 sing 202 n n 
O19 H19 IP1 sing 203 n n 
N29 C30 IP1 sing 204 n n 
C30 C31 IP1 sing 205 n n 
C30 C32 IP1 sing 206 n n 
C30 H30 IP1 sing 207 n n 
C31 O42 IP1 sing 208 n n 
C31 O43 IP1 doub 209 n n 
C32 C33 IP1 sing 210 n n 
C32 C37 IP1 sing 211 n n 
C33 H333 IP1 sing 212 n n 
C33 H332 IP1 sing 213 n n 
C33 H331 IP1 sing 214 n n 
C37 H373 IP1 sing 215 n n 
C37 H372 IP1 sing 216 n n 
C37 H371 IP1 sing 217 n n 
O42 H42 IP1 sing 218 n n 
#
_atom_sites.entry_id                     6Y0P 
_atom_sites.fract_transf_matrix[1][1]    0.023943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009821 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 401 1 SO4 SO4 . 
C 3 IP1 A 1 402 1 IP1 IP1 . 
D 4 FE A 1 403 1 FE FE . 
E 5 HOH A 1 501 43 HOH HOH . 
E 5 HOH A 2 502 1 HOH HOH . 
E 5 HOH A 3 503 67 HOH HOH . 
E 5 HOH A 4 504 22 HOH HOH . 
E 5 HOH A 5 505 118 HOH HOH . 
E 5 HOH A 6 506 144 HOH HOH . 
E 5 HOH A 7 507 15 HOH HOH . 
E 5 HOH A 8 508 12 HOH HOH . 
E 5 HOH A 9 509 100 HOH HOH . 
E 5 HOH A 10 510 38 HOH HOH . 
E 5 HOH A 11 511 138 HOH HOH . 
E 5 HOH A 12 512 152 HOH HOH . 
E 5 HOH A 13 513 27 HOH HOH . 
E 5 HOH A 14 514 37 HOH HOH . 
E 5 HOH A 15 515 70 HOH HOH . 
E 5 HOH A 16 516 11 HOH HOH . 
E 5 HOH A 17 517 20 HOH HOH . 
E 5 HOH A 18 518 88 HOH HOH . 
E 5 HOH A 19 519 108 HOH HOH . 
E 5 HOH A 20 520 30 HOH HOH . 
E 5 HOH A 21 521 63 HOH HOH . 
E 5 HOH A 22 522 55 HOH HOH . 
E 5 HOH A 23 523 9 HOH HOH . 
E 5 HOH A 24 524 34 HOH HOH . 
E 5 HOH A 25 525 47 HOH HOH . 
E 5 HOH A 26 526 14 HOH HOH . 
E 5 HOH A 27 527 33 HOH HOH . 
E 5 HOH A 28 528 5 HOH HOH . 
E 5 HOH A 29 529 16 HOH HOH . 
E 5 HOH A 30 530 4 HOH HOH . 
E 5 HOH A 31 531 24 HOH HOH . 
E 5 HOH A 32 532 35 HOH HOH . 
E 5 HOH A 33 533 6 HOH HOH . 
E 5 HOH A 34 534 25 HOH HOH . 
E 5 HOH A 35 535 71 HOH HOH . 
E 5 HOH A 36 536 2 HOH HOH . 
E 5 HOH A 37 537 54 HOH HOH . 
E 5 HOH A 38 538 65 HOH HOH . 
E 5 HOH A 39 539 23 HOH HOH . 
E 5 HOH A 40 540 13 HOH HOH . 
E 5 HOH A 41 541 8 HOH HOH . 
E 5 HOH A 42 542 123 HOH HOH . 
E 5 HOH A 43 543 85 HOH HOH . 
E 5 HOH A 44 544 110 HOH HOH . 
E 5 HOH A 45 545 49 HOH HOH . 
E 5 HOH A 46 546 81 HOH HOH . 
E 5 HOH A 47 547 92 HOH HOH . 
E 5 HOH A 48 548 58 HOH HOH . 
E 5 HOH A 49 549 95 HOH HOH . 
E 5 HOH A 50 550 10 HOH HOH . 
E 5 HOH A 51 551 106 HOH HOH . 
E 5 HOH A 52 552 109 HOH HOH . 
E 5 HOH A 53 553 44 HOH HOH . 
E 5 HOH A 54 554 62 HOH HOH . 
E 5 HOH A 55 555 129 HOH HOH . 
E 5 HOH A 56 556 52 HOH HOH . 
E 5 HOH A 57 557 91 HOH HOH . 
E 5 HOH A 58 558 128 HOH HOH . 
E 5 HOH A 59 559 151 HOH HOH . 
E 5 HOH A 60 560 53 HOH HOH . 
E 5 HOH A 61 561 90 HOH HOH . 
E 5 HOH A 62 562 133 HOH HOH . 
E 5 HOH A 63 563 29 HOH HOH . 
E 5 HOH A 64 564 153 HOH HOH . 
E 5 HOH A 65 565 7 HOH HOH . 
E 5 HOH A 66 566 3 HOH HOH . 
E 5 HOH A 67 567 28 HOH HOH . 
E 5 HOH A 68 568 73 HOH HOH . 
E 5 HOH A 69 569 157 HOH HOH . 
E 5 HOH A 70 570 26 HOH HOH . 
E 5 HOH A 71 571 56 HOH HOH . 
E 5 HOH A 72 572 36 HOH HOH . 
E 5 HOH A 73 573 126 HOH HOH . 
E 5 HOH A 74 574 60 HOH HOH . 
E 5 HOH A 75 575 31 HOH HOH . 
E 5 HOH A 76 576 76 HOH HOH . 
E 5 HOH A 77 577 48 HOH HOH . 
E 5 HOH A 78 578 66 HOH HOH . 
E 5 HOH A 79 579 145 HOH HOH . 
E 5 HOH A 80 580 86 HOH HOH . 
E 5 HOH A 81 581 83 HOH HOH . 
E 5 HOH A 82 582 117 HOH HOH . 
E 5 HOH A 83 583 19 HOH HOH . 
E 5 HOH A 84 584 40 HOH HOH . 
E 5 HOH A 85 585 17 HOH HOH . 
E 5 HOH A 86 586 21 HOH HOH . 
E 5 HOH A 87 587 39 HOH HOH . 
E 5 HOH A 88 588 101 HOH HOH . 
E 5 HOH A 89 589 94 HOH HOH . 
E 5 HOH A 90 590 87 HOH HOH . 
E 5 HOH A 91 591 41 HOH HOH . 
E 5 HOH A 92 592 113 HOH HOH . 
E 5 HOH A 93 593 80 HOH HOH . 
E 5 HOH A 94 594 18 HOH HOH . 
E 5 HOH A 95 595 46 HOH HOH . 
E 5 HOH A 96 596 84 HOH HOH . 
E 5 HOH A 97 597 32 HOH HOH . 
E 5 HOH A 98 598 45 HOH HOH . 
E 5 HOH A 99 599 140 HOH HOH . 
E 5 HOH A 100 600 156 HOH HOH . 
E 5 HOH A 101 601 78 HOH HOH . 
E 5 HOH A 102 602 104 HOH HOH . 
E 5 HOH A 103 603 57 HOH HOH . 
E 5 HOH A 104 604 114 HOH HOH . 
E 5 HOH A 105 605 64 HOH HOH . 
E 5 HOH A 106 606 158 HOH HOH . 
E 5 HOH A 107 607 96 HOH HOH . 
E 5 HOH A 108 608 107 HOH HOH . 
E 5 HOH A 109 609 136 HOH HOH . 
E 5 HOH A 110 610 115 HOH HOH . 
E 5 HOH A 111 611 127 HOH HOH . 
E 5 HOH A 112 612 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IP1 . . . C 3 56.649 71.62 8.439 1 41.94 ? C1 IP1 402 A 1 
HETATM 2 C C2 IP1 . . . C 3 55.647 72.683 8.893 1 43.26 ? C2 IP1 402 A 1 
HETATM 3 C C3 IP1 . . . C 3 55.895 73.976 8.074 1 44.8 ? C3 IP1 402 A 1 
HETATM 4 C C4 IP1 . . . C 3 55.564 75.274 8.796 1 46.5 ? C4 IP1 402 A 1 
HETATM 5 C C7 IP1 . . . C 3 55.956 76.511 7.998 1 48.6 ? C7 IP1 402 A 1 
HETATM 6 C C10 IP1 . . . C 3 55.414 77.784 8.599 1 51.39 ? C10 IP1 402 A 1 
HETATM 7 N N11 IP1 . . . C 3 54.608 78.501 7.811 1 53.93 ? N11 IP1 402 A 1 
HETATM 8 C C12 IP1 . . . C 3 53.908 79.679 8.294 1 55.27 ? C12 IP1 402 A 1 
HETATM 9 C C13 IP1 . . . C 3 52.524 79.447 8.921 1 56.33 ? C13 IP1 402 A 1 
HETATM 10 N N14 IP1 . . . C 3 55.67 72.869 10.357 1 42.32 ? N14 IP1 402 A 1 
HETATM 11 O O15 IP1 . . . C 3 55.695 78.124 9.746 1 51.75 ? O15 IP1 402 A 1 
HETATM 12 C C16 IP1 . . . C 3 53.14 80.557 7.265 1 54.77 ? C16 IP1 402 A 1 
HETATM 13 S S17 IP1 . . . C 3 52.693 79.877 5.65 1 53.02 ? S17 IP1 402 A 1 
HETATM 14 O O18 IP1 . . . C 3 52.068 78.747 9.807 1 57.49 ? O18 IP1 402 A 1 
HETATM 15 O O19 IP1 . . . C 3 56.765 71.581 7.139 1 41.57 ? O19 IP1 402 A 1 
HETATM 16 O O20 IP1 . . . C 3 57.264 70.905 9.206 1 40.84 ? O20 IP1 402 A 1 
HETATM 17 N N29 IP1 . . . C 3 51.934 80.378 8.087 1 55.29 ? N29 IP1 402 A 1 
HETATM 18 C C30 IP1 . . . C 3 50.662 80.278 7.374 1 53.97 ? C30 IP1 402 A 1 
HETATM 19 C C31 IP1 . . . C 3 49.618 81.258 7.898 1 52.66 ? C31 IP1 402 A 1 
HETATM 20 C C32 IP1 . . . C 3 50.972 80.509 5.856 1 53.2 ? C32 IP1 402 A 1 
HETATM 21 C C33 IP1 . . . C 3 50.022 79.717 4.96 1 53.17 ? C33 IP1 402 A 1 
HETATM 22 C C37 IP1 . . . C 3 50.935 81.993 5.496 1 52.61 ? C37 IP1 402 A 1 
HETATM 23 O O42 IP1 . . . C 3 50.145 82.111 8.73 1 52.88 ? O42 IP1 402 A 1 
HETATM 24 O O43 IP1 . . . C 3 48.444 81.249 7.578 1 51.84 ? O43 IP1 402 A 1 
HETATM 25 H H2 IP1 . . . C 3 54.648 72.322 8.655 1 51.96 ? H2 IP1 402 A 1 
HETATM 26 H H32 IP1 . . . C 3 56.94 73.99 7.768 1 53.8 ? H32 IP1 402 A 1 
HETATM 27 H H31 IP1 . . . C 3 55.336 73.925 7.141 1 53.8 ? H31 IP1 402 A 1 
HETATM 28 H H42A IP1 . . . C 3 54.5 75.329 9.021 1 55.84 ? H42A IP1 402 A 1 
HETATM 29 H H41 IP1 . . . C 3 56.051 75.297 9.769 1 55.84 ? H41 IP1 402 A 1 
HETATM 30 H H72 IP1 . . . C 3 57.041 76.573 7.932 1 58.37 ? H72 IP1 402 A 1 
HETATM 31 H H71 IP1 . . . C 3 55.612 76.407 6.97 1 58.37 ? H71 IP1 402 A 1 
HETATM 32 H H11 IP1 . . . C 3 54.451 78.251 6.839 1 64.76 ? H11 IP1 402 A 1 
HETATM 33 H H12 IP1 . . . C 3 54.564 80.272 8.929 1 66.37 ? H12 IP1 402 A 1 
HETATM 34 H H142 IP1 . . . C 3 56.377 72.324 10.84 1 50.83 ? H142 IP1 402 A 1 
HETATM 35 H H141 IP1 . . . C 3 54.757 72.816 10.799 1 50.83 ? H141 IP1 402 A 1 
HETATM 36 H H16 IP1 . . . C 3 53.498 81.581 7.16 1 65.77 ? H16 IP1 402 A 1 
HETATM 37 H H19 IP1 . . . C 3 57.417 70.888 6.853 1 49.94 ? H19 IP1 402 A 1 
HETATM 38 H H30 IP1 . . . C 3 50.265 79.272 7.497 1 64.81 ? H30 IP1 402 A 1 
HETATM 39 H H333 IP1 . . . C 3 50.091 78.648 5.153 1 63.85 ? H333 IP1 402 A 1 
HETATM 40 H H332 IP1 . . . C 3 48.985 80.003 5.132 1 63.85 ? H332 IP1 402 A 1 
HETATM 41 H H331 IP1 . . . C 3 50.224 79.867 3.901 1 63.85 ? H331 IP1 402 A 1 
HETATM 42 H H373 IP1 . . . C 3 51.16 82.158 4.444 1 63.18 ? H373 IP1 402 A 1 
HETATM 43 H H372 IP1 . . . C 3 49.964 82.444 5.692 1 63.18 ? H372 IP1 402 A 1 
HETATM 44 H H371 IP1 . . . C 3 51.671 82.554 6.071 1 63.18 ? H371 IP1 402 A 1 
HETATM 45 H H42 IP1 . . . C 3 49.47 82.753 9.075 1 63.51 ? H42 IP1 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#