data_6Y12
#
_model_server_result.job_id            SdP5DQ0zJ3jL2eky0wfqPQ 
_model_server_result.datetime_utc      '2024-11-06 12:36:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6Y12 
#
_exptl.entry_id    6Y12 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.15 
_cell.angle_gamma         90 
_cell.entry_id            6Y12 
_cell.length_a            82.369 
_cell.length_b            67.125 
_cell.length_c            63.984 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 168 A HIS 168 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc2 A OE1 GLU 170 A GLU 170 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 A NE2 HIS 316 A HIS 316 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc4 B O3 SIN . A SIN 401 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc5 B O4 SIN . A SIN 401 1_555 C FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 C FE FE . A FE 402 1_555 D OB ZZU . A ZZU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 290 n n 
C1 O2 SIN sing 291 n n 
C1 C2 SIN sing 292 n n 
O2 HO2 SIN sing 293 n n 
C2 C3 SIN sing 294 n n 
C2 H21 SIN sing 295 n n 
C2 H22 SIN sing 296 n n 
C3 C4 SIN sing 297 n n 
C3 H31 SIN sing 298 n n 
C3 H32 SIN sing 299 n n 
C4 O3 SIN doub 300 n n 
C4 O4 SIN sing 301 n n 
O4 HO4 SIN sing 302 n n 
#
_atom_sites.entry_id                     6Y12 
_atom_sites.fract_transf_matrix[1][1]    0.01214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004455 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SIN A 1 401 1 SIN SIN . 
C 3 FE A 1 402 1 FE FE . 
D 4 ZZU A 1 403 1 ZZU ZZU . 
E 5 HOH A 1 501 192 HOH HOH . 
E 5 HOH A 2 502 66 HOH HOH . 
E 5 HOH A 3 503 69 HOH HOH . 
E 5 HOH A 4 504 116 HOH HOH . 
E 5 HOH A 5 505 173 HOH HOH . 
E 5 HOH A 6 506 47 HOH HOH . 
E 5 HOH A 7 507 57 HOH HOH . 
E 5 HOH A 8 508 35 HOH HOH . 
E 5 HOH A 9 509 103 HOH HOH . 
E 5 HOH A 10 510 155 HOH HOH . 
E 5 HOH A 11 511 160 HOH HOH . 
E 5 HOH A 12 512 119 HOH HOH . 
E 5 HOH A 13 513 123 HOH HOH . 
E 5 HOH A 14 514 81 HOH HOH . 
E 5 HOH A 15 515 80 HOH HOH . 
E 5 HOH A 16 516 229 HOH HOH . 
E 5 HOH A 17 517 104 HOH HOH . 
E 5 HOH A 18 518 183 HOH HOH . 
E 5 HOH A 19 519 106 HOH HOH . 
E 5 HOH A 20 520 8 HOH HOH . 
E 5 HOH A 21 521 7 HOH HOH . 
E 5 HOH A 22 522 9 HOH HOH . 
E 5 HOH A 23 523 203 HOH HOH . 
E 5 HOH A 24 524 54 HOH HOH . 
E 5 HOH A 25 525 67 HOH HOH . 
E 5 HOH A 26 526 58 HOH HOH . 
E 5 HOH A 27 527 85 HOH HOH . 
E 5 HOH A 28 528 74 HOH HOH . 
E 5 HOH A 29 529 41 HOH HOH . 
E 5 HOH A 30 530 73 HOH HOH . 
E 5 HOH A 31 531 50 HOH HOH . 
E 5 HOH A 32 532 14 HOH HOH . 
E 5 HOH A 33 533 2 HOH HOH . 
E 5 HOH A 34 534 37 HOH HOH . 
E 5 HOH A 35 535 53 HOH HOH . 
E 5 HOH A 36 536 124 HOH HOH . 
E 5 HOH A 37 537 44 HOH HOH . 
E 5 HOH A 38 538 117 HOH HOH . 
E 5 HOH A 39 539 4 HOH HOH . 
E 5 HOH A 40 540 211 HOH HOH . 
E 5 HOH A 41 541 77 HOH HOH . 
E 5 HOH A 42 542 191 HOH HOH . 
E 5 HOH A 43 543 49 HOH HOH . 
E 5 HOH A 44 544 62 HOH HOH . 
E 5 HOH A 45 545 36 HOH HOH . 
E 5 HOH A 46 546 60 HOH HOH . 
E 5 HOH A 47 547 178 HOH HOH . 
E 5 HOH A 48 548 63 HOH HOH . 
E 5 HOH A 49 549 92 HOH HOH . 
E 5 HOH A 50 550 196 HOH HOH . 
E 5 HOH A 51 551 26 HOH HOH . 
E 5 HOH A 52 552 101 HOH HOH . 
E 5 HOH A 53 553 168 HOH HOH . 
E 5 HOH A 54 554 20 HOH HOH . 
E 5 HOH A 55 555 19 HOH HOH . 
E 5 HOH A 56 556 181 HOH HOH . 
E 5 HOH A 57 557 84 HOH HOH . 
E 5 HOH A 58 558 24 HOH HOH . 
E 5 HOH A 59 559 140 HOH HOH . 
E 5 HOH A 60 560 42 HOH HOH . 
E 5 HOH A 61 561 3 HOH HOH . 
E 5 HOH A 62 562 39 HOH HOH . 
E 5 HOH A 63 563 11 HOH HOH . 
E 5 HOH A 64 564 10 HOH HOH . 
E 5 HOH A 65 565 138 HOH HOH . 
E 5 HOH A 66 566 78 HOH HOH . 
E 5 HOH A 67 567 45 HOH HOH . 
E 5 HOH A 68 568 98 HOH HOH . 
E 5 HOH A 69 569 21 HOH HOH . 
E 5 HOH A 70 570 96 HOH HOH . 
E 5 HOH A 71 571 31 HOH HOH . 
E 5 HOH A 72 572 22 HOH HOH . 
E 5 HOH A 73 573 13 HOH HOH . 
E 5 HOH A 74 574 6 HOH HOH . 
E 5 HOH A 75 575 112 HOH HOH . 
E 5 HOH A 76 576 15 HOH HOH . 
E 5 HOH A 77 577 28 HOH HOH . 
E 5 HOH A 78 578 159 HOH HOH . 
E 5 HOH A 79 579 27 HOH HOH . 
E 5 HOH A 80 580 190 HOH HOH . 
E 5 HOH A 81 581 194 HOH HOH . 
E 5 HOH A 82 582 46 HOH HOH . 
E 5 HOH A 83 583 72 HOH HOH . 
E 5 HOH A 84 584 143 HOH HOH . 
E 5 HOH A 85 585 111 HOH HOH . 
E 5 HOH A 86 586 230 HOH HOH . 
E 5 HOH A 87 587 89 HOH HOH . 
E 5 HOH A 88 588 1 HOH HOH . 
E 5 HOH A 89 589 5 HOH HOH . 
E 5 HOH A 90 590 29 HOH HOH . 
E 5 HOH A 91 591 125 HOH HOH . 
E 5 HOH A 92 592 97 HOH HOH . 
E 5 HOH A 93 593 30 HOH HOH . 
E 5 HOH A 94 594 134 HOH HOH . 
E 5 HOH A 95 595 90 HOH HOH . 
E 5 HOH A 96 596 64 HOH HOH . 
E 5 HOH A 97 597 129 HOH HOH . 
E 5 HOH A 98 598 121 HOH HOH . 
E 5 HOH A 99 599 149 HOH HOH . 
E 5 HOH A 100 600 162 HOH HOH . 
E 5 HOH A 101 601 38 HOH HOH . 
E 5 HOH A 102 602 79 HOH HOH . 
E 5 HOH A 103 603 55 HOH HOH . 
E 5 HOH A 104 604 215 HOH HOH . 
E 5 HOH A 105 605 165 HOH HOH . 
E 5 HOH A 106 606 48 HOH HOH . 
E 5 HOH A 107 607 171 HOH HOH . 
E 5 HOH A 108 608 70 HOH HOH . 
E 5 HOH A 109 609 34 HOH HOH . 
E 5 HOH A 110 610 122 HOH HOH . 
E 5 HOH A 111 611 87 HOH HOH . 
E 5 HOH A 112 612 114 HOH HOH . 
E 5 HOH A 113 613 61 HOH HOH . 
E 5 HOH A 114 614 71 HOH HOH . 
E 5 HOH A 115 615 25 HOH HOH . 
E 5 HOH A 116 616 88 HOH HOH . 
E 5 HOH A 117 617 130 HOH HOH . 
E 5 HOH A 118 618 150 HOH HOH . 
E 5 HOH A 119 619 32 HOH HOH . 
E 5 HOH A 120 620 164 HOH HOH . 
E 5 HOH A 121 621 99 HOH HOH . 
E 5 HOH A 122 622 152 HOH HOH . 
E 5 HOH A 123 623 51 HOH HOH . 
E 5 HOH A 124 624 82 HOH HOH . 
E 5 HOH A 125 625 12 HOH HOH . 
E 5 HOH A 126 626 146 HOH HOH . 
E 5 HOH A 127 627 208 HOH HOH . 
E 5 HOH A 128 628 193 HOH HOH . 
E 5 HOH A 129 629 56 HOH HOH . 
E 5 HOH A 130 630 128 HOH HOH . 
E 5 HOH A 131 631 220 HOH HOH . 
E 5 HOH A 132 632 43 HOH HOH . 
E 5 HOH A 133 633 107 HOH HOH . 
E 5 HOH A 134 634 127 HOH HOH . 
E 5 HOH A 135 635 133 HOH HOH . 
E 5 HOH A 136 636 68 HOH HOH . 
E 5 HOH A 137 637 131 HOH HOH . 
E 5 HOH A 138 638 180 HOH HOH . 
E 5 HOH A 139 639 212 HOH HOH . 
E 5 HOH A 140 640 100 HOH HOH . 
E 5 HOH A 141 641 158 HOH HOH . 
E 5 HOH A 142 642 187 HOH HOH . 
E 5 HOH A 143 643 156 HOH HOH . 
E 5 HOH A 144 644 153 HOH HOH . 
E 5 HOH A 145 645 23 HOH HOH . 
E 5 HOH A 146 646 76 HOH HOH . 
E 5 HOH A 147 647 225 HOH HOH . 
E 5 HOH A 148 648 52 HOH HOH . 
E 5 HOH A 149 649 135 HOH HOH . 
E 5 HOH A 150 650 175 HOH HOH . 
E 5 HOH A 151 651 40 HOH HOH . 
E 5 HOH A 152 652 141 HOH HOH . 
E 5 HOH A 153 653 93 HOH HOH . 
E 5 HOH A 154 654 163 HOH HOH . 
E 5 HOH A 155 655 17 HOH HOH . 
E 5 HOH A 156 656 86 HOH HOH . 
E 5 HOH A 157 657 16 HOH HOH . 
E 5 HOH A 158 658 147 HOH HOH . 
E 5 HOH A 159 659 33 HOH HOH . 
E 5 HOH A 160 660 110 HOH HOH . 
E 5 HOH A 161 661 65 HOH HOH . 
E 5 HOH A 162 662 151 HOH HOH . 
E 5 HOH A 163 663 59 HOH HOH . 
E 5 HOH A 164 664 199 HOH HOH . 
E 5 HOH A 165 665 95 HOH HOH . 
E 5 HOH A 166 666 218 HOH HOH . 
E 5 HOH A 167 667 204 HOH HOH . 
E 5 HOH A 168 668 142 HOH HOH . 
E 5 HOH A 169 669 195 HOH HOH . 
E 5 HOH A 170 670 120 HOH HOH . 
E 5 HOH A 171 671 231 HOH HOH . 
E 5 HOH A 172 672 207 HOH HOH . 
E 5 HOH A 173 673 113 HOH HOH . 
E 5 HOH A 174 674 83 HOH HOH . 
E 5 HOH A 175 675 174 HOH HOH . 
E 5 HOH A 176 676 169 HOH HOH . 
E 5 HOH A 177 677 75 HOH HOH . 
E 5 HOH A 178 678 161 HOH HOH . 
E 5 HOH A 179 679 182 HOH HOH . 
E 5 HOH A 180 680 157 HOH HOH . 
E 5 HOH A 181 681 198 HOH HOH . 
E 5 HOH A 182 682 209 HOH HOH . 
E 5 HOH A 183 683 214 HOH HOH . 
E 5 HOH A 184 684 154 HOH HOH . 
E 5 HOH A 185 685 167 HOH HOH . 
E 5 HOH A 186 686 206 HOH HOH . 
E 5 HOH A 187 687 91 HOH HOH . 
E 5 HOH A 188 688 108 HOH HOH . 
E 5 HOH A 189 689 226 HOH HOH . 
E 5 HOH A 190 690 228 HOH HOH . 
E 5 HOH A 191 691 109 HOH HOH . 
E 5 HOH A 192 692 144 HOH HOH . 
E 5 HOH A 193 693 115 HOH HOH . 
E 5 HOH A 194 694 148 HOH HOH . 
E 5 HOH A 195 695 170 HOH HOH . 
E 5 HOH A 196 696 139 HOH HOH . 
E 5 HOH A 197 697 105 HOH HOH . 
E 5 HOH A 198 698 205 HOH HOH . 
E 5 HOH A 199 699 221 HOH HOH . 
E 5 HOH A 200 700 223 HOH HOH . 
E 5 HOH A 201 701 213 HOH HOH . 
E 5 HOH A 202 702 227 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . B 2 6.638 0.38 23.841 1 22.93 ? C1 SIN 401 A 1 
HETATM 2 O O1 SIN . . . B 2 5.703 -0.39 24.163 1 22.44 ? O1 SIN 401 A 1 
HETATM 3 O O2 SIN . . . B 2 7.744 0.276 24.42 1 21.84 ? O2 SIN 401 A 1 
HETATM 4 C C2 SIN . . . B 2 6.416 1.432 22.774 1 23.99 ? C2 SIN 401 A 1 
HETATM 5 C C3 SIN . . . B 2 7.681 1.644 21.943 1 24.5 ? C3 SIN 401 A 1 
HETATM 6 C C4 SIN . . . B 2 7.47 2.789 20.975 1 25.34 ? C4 SIN 401 A 1 
HETATM 7 O O3 SIN . . . B 2 7.904 2.742 19.795 1 25.74 ? O3 SIN 401 A 1 
HETATM 8 O O4 SIN . . . B 2 6.848 3.802 21.356 1 25.01 ? O4 SIN 401 A 1 
HETATM 9 H H21 SIN . . . B 2 6.129 2.373 23.245 1 28.79 ? H21 SIN 401 A 1 
HETATM 10 H H22 SIN . . . B 2 5.6 1.122 22.121 1 28.79 ? H22 SIN 401 A 1 
HETATM 11 H H31 SIN . . . B 2 7.915 0.734 21.391 1 29.4 ? H31 SIN 401 A 1 
HETATM 12 H H32 SIN . . . B 2 8.52 1.868 22.601 1 29.4 ? H32 SIN 401 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           61 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           12 
#