data_6Y1M
#
_model_server_result.job_id            zNapvIHsVfNRAXCBp6Xi8A 
_model_server_result.datetime_utc      '2024-11-08 20:41:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6Y1M 
#
_exptl.entry_id    6Y1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              138.102 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIETHYL PHOSPHONATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.54 
_cell.angle_gamma         90 
_cell.entry_id            6Y1M 
_cell.length_a            52.942 
_cell.length_b            66.979 
_cell.length_c            66.083 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
disulf ? disulf2 A SG CYS 146 H CYS 146 1_555 A SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 222 H CYS 222 1_555 B SG CYS 216 L CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf4 B SG CYS 22 L CYS 22 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf5 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 B OH TYR 37 L TYR 37 1_555 C P DEP . L DEP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? 
#
_chem_comp.formula           'C4 H11 O3 P' 
_chem_comp.formula_weight    138.102 
_chem_comp.id                DEP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIETHYL PHOSPHONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEP sing 83 n n 
C1 O1 DEP sing 84 n n 
C1 H11 DEP sing 85 n n 
C1 H12 DEP sing 86 n n 
C2 H21 DEP sing 87 n n 
C2 H22 DEP sing 88 n n 
C2 H23 DEP sing 89 n n 
C3 C4 DEP sing 90 n n 
C3 O2 DEP sing 91 n n 
C3 H31 DEP sing 92 n n 
C3 H32 DEP sing 93 n n 
C4 H41 DEP sing 94 n n 
C4 H42 DEP sing 95 n n 
C4 H43 DEP sing 96 n n 
O1 P DEP sing 97 n n 
O2 P DEP sing 98 n n 
O3 P DEP doub 99 n n 
HP1 P DEP sing 100 n n 
#
_atom_sites.entry_id                     6Y1M 
_atom_sites.fract_transf_matrix[1][1]    0.018889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005972 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DEP L 1 301 1 DEP DEP . 
D 4 HOH H 1 301 2 HOH HOH . 
D 4 HOH H 2 302 128 HOH HOH . 
D 4 HOH H 3 303 186 HOH HOH . 
D 4 HOH H 4 304 191 HOH HOH . 
D 4 HOH H 5 305 185 HOH HOH . 
D 4 HOH H 6 306 40 HOH HOH . 
D 4 HOH H 7 307 1 HOH HOH . 
D 4 HOH H 8 308 36 HOH HOH . 
D 4 HOH H 9 309 44 HOH HOH . 
D 4 HOH H 10 310 50 HOH HOH . 
D 4 HOH H 11 311 140 HOH HOH . 
D 4 HOH H 12 312 62 HOH HOH . 
D 4 HOH H 13 313 90 HOH HOH . 
D 4 HOH H 14 314 132 HOH HOH . 
D 4 HOH H 15 315 12 HOH HOH . 
D 4 HOH H 16 316 4 HOH HOH . 
D 4 HOH H 17 317 135 HOH HOH . 
D 4 HOH H 18 318 171 HOH HOH . 
D 4 HOH H 19 319 111 HOH HOH . 
D 4 HOH H 20 320 109 HOH HOH . 
D 4 HOH H 21 321 96 HOH HOH . 
D 4 HOH H 22 322 98 HOH HOH . 
D 4 HOH H 23 323 5 HOH HOH . 
D 4 HOH H 24 324 91 HOH HOH . 
D 4 HOH H 25 325 89 HOH HOH . 
D 4 HOH H 26 326 99 HOH HOH . 
D 4 HOH H 27 327 110 HOH HOH . 
D 4 HOH H 28 328 71 HOH HOH . 
D 4 HOH H 29 329 15 HOH HOH . 
D 4 HOH H 30 330 153 HOH HOH . 
D 4 HOH H 31 331 63 HOH HOH . 
D 4 HOH H 32 332 178 HOH HOH . 
D 4 HOH H 33 333 6 HOH HOH . 
D 4 HOH H 34 334 75 HOH HOH . 
D 4 HOH H 35 335 82 HOH HOH . 
D 4 HOH H 36 336 80 HOH HOH . 
D 4 HOH H 37 337 14 HOH HOH . 
D 4 HOH H 38 338 39 HOH HOH . 
D 4 HOH H 39 339 101 HOH HOH . 
D 4 HOH H 40 340 167 HOH HOH . 
D 4 HOH H 41 341 112 HOH HOH . 
D 4 HOH H 42 342 119 HOH HOH . 
D 4 HOH H 43 343 19 HOH HOH . 
D 4 HOH H 44 344 37 HOH HOH . 
D 4 HOH H 45 345 48 HOH HOH . 
D 4 HOH H 46 346 100 HOH HOH . 
D 4 HOH H 47 347 169 HOH HOH . 
D 4 HOH H 48 348 20 HOH HOH . 
D 4 HOH H 49 349 159 HOH HOH . 
D 4 HOH H 50 350 66 HOH HOH . 
D 4 HOH H 51 351 13 HOH HOH . 
D 4 HOH H 52 352 181 HOH HOH . 
D 4 HOH H 53 353 93 HOH HOH . 
D 4 HOH H 54 354 67 HOH HOH . 
D 4 HOH H 55 355 133 HOH HOH . 
D 4 HOH H 56 356 88 HOH HOH . 
D 4 HOH H 57 357 105 HOH HOH . 
D 4 HOH H 58 358 113 HOH HOH . 
D 4 HOH H 59 359 73 HOH HOH . 
D 4 HOH H 60 360 97 HOH HOH . 
D 4 HOH H 61 361 64 HOH HOH . 
D 4 HOH H 62 362 170 HOH HOH . 
D 4 HOH H 63 363 173 HOH HOH . 
D 4 HOH H 64 364 168 HOH HOH . 
D 4 HOH H 65 365 42 HOH HOH . 
D 4 HOH H 66 366 120 HOH HOH . 
D 4 HOH H 67 367 79 HOH HOH . 
D 4 HOH H 68 368 172 HOH HOH . 
D 4 HOH H 69 369 41 HOH HOH . 
D 4 HOH H 70 370 23 HOH HOH . 
D 4 HOH H 71 371 56 HOH HOH . 
D 4 HOH H 72 372 144 HOH HOH . 
D 4 HOH H 73 373 176 HOH HOH . 
D 4 HOH H 74 374 9 HOH HOH . 
D 4 HOH H 75 375 149 HOH HOH . 
D 4 HOH H 76 376 77 HOH HOH . 
D 4 HOH H 77 377 142 HOH HOH . 
D 4 HOH H 78 378 143 HOH HOH . 
D 4 HOH H 79 379 166 HOH HOH . 
D 4 HOH H 80 380 131 HOH HOH . 
D 4 HOH H 81 381 184 HOH HOH . 
D 4 HOH H 82 382 158 HOH HOH . 
D 4 HOH H 83 383 174 HOH HOH . 
D 4 HOH H 84 384 180 HOH HOH . 
D 4 HOH H 85 385 175 HOH HOH . 
D 4 HOH H 86 386 189 HOH HOH . 
D 4 HOH H 87 387 92 HOH HOH . 
D 4 HOH H 88 388 177 HOH HOH . 
D 4 HOH H 89 389 139 HOH HOH . 
E 4 HOH L 1 401 32 HOH HOH . 
E 4 HOH L 2 402 103 HOH HOH . 
E 4 HOH L 3 403 85 HOH HOH . 
E 4 HOH L 4 404 69 HOH HOH . 
E 4 HOH L 5 405 18 HOH HOH . 
E 4 HOH L 6 406 26 HOH HOH . 
E 4 HOH L 7 407 45 HOH HOH . 
E 4 HOH L 8 408 145 HOH HOH . 
E 4 HOH L 9 409 54 HOH HOH . 
E 4 HOH L 10 410 10 HOH HOH . 
E 4 HOH L 11 411 3 HOH HOH . 
E 4 HOH L 12 412 70 HOH HOH . 
E 4 HOH L 13 413 123 HOH HOH . 
E 4 HOH L 14 414 162 HOH HOH . 
E 4 HOH L 15 415 29 HOH HOH . 
E 4 HOH L 16 416 76 HOH HOH . 
E 4 HOH L 17 417 147 HOH HOH . 
E 4 HOH L 18 418 21 HOH HOH . 
E 4 HOH L 19 419 95 HOH HOH . 
E 4 HOH L 20 420 117 HOH HOH . 
E 4 HOH L 21 421 53 HOH HOH . 
E 4 HOH L 22 422 34 HOH HOH . 
E 4 HOH L 23 423 126 HOH HOH . 
E 4 HOH L 24 424 114 HOH HOH . 
E 4 HOH L 25 425 8 HOH HOH . 
E 4 HOH L 26 426 22 HOH HOH . 
E 4 HOH L 27 427 25 HOH HOH . 
E 4 HOH L 28 428 146 HOH HOH . 
E 4 HOH L 29 429 122 HOH HOH . 
E 4 HOH L 30 430 154 HOH HOH . 
E 4 HOH L 31 431 127 HOH HOH . 
E 4 HOH L 32 432 104 HOH HOH . 
E 4 HOH L 33 433 129 HOH HOH . 
E 4 HOH L 34 434 118 HOH HOH . 
E 4 HOH L 35 435 74 HOH HOH . 
E 4 HOH L 36 436 108 HOH HOH . 
E 4 HOH L 37 437 24 HOH HOH . 
E 4 HOH L 38 438 81 HOH HOH . 
E 4 HOH L 39 439 134 HOH HOH . 
E 4 HOH L 40 440 55 HOH HOH . 
E 4 HOH L 41 441 125 HOH HOH . 
E 4 HOH L 42 442 152 HOH HOH . 
E 4 HOH L 43 443 16 HOH HOH . 
E 4 HOH L 44 444 43 HOH HOH . 
E 4 HOH L 45 445 183 HOH HOH . 
E 4 HOH L 46 446 58 HOH HOH . 
E 4 HOH L 47 447 46 HOH HOH . 
E 4 HOH L 48 448 47 HOH HOH . 
E 4 HOH L 49 449 115 HOH HOH . 
E 4 HOH L 50 450 94 HOH HOH . 
E 4 HOH L 51 451 11 HOH HOH . 
E 4 HOH L 52 452 161 HOH HOH . 
E 4 HOH L 53 453 72 HOH HOH . 
E 4 HOH L 54 454 52 HOH HOH . 
E 4 HOH L 55 455 157 HOH HOH . 
E 4 HOH L 56 456 84 HOH HOH . 
E 4 HOH L 57 457 60 HOH HOH . 
E 4 HOH L 58 458 130 HOH HOH . 
E 4 HOH L 59 459 156 HOH HOH . 
E 4 HOH L 60 460 148 HOH HOH . 
E 4 HOH L 61 461 83 HOH HOH . 
E 4 HOH L 62 462 121 HOH HOH . 
E 4 HOH L 63 463 137 HOH HOH . 
E 4 HOH L 64 464 17 HOH HOH . 
E 4 HOH L 65 465 7 HOH HOH . 
E 4 HOH L 66 466 30 HOH HOH . 
E 4 HOH L 67 467 164 HOH HOH . 
E 4 HOH L 68 468 57 HOH HOH . 
E 4 HOH L 69 469 35 HOH HOH . 
E 4 HOH L 70 470 192 HOH HOH . 
E 4 HOH L 71 471 124 HOH HOH . 
E 4 HOH L 72 472 33 HOH HOH . 
E 4 HOH L 73 473 27 HOH HOH . 
E 4 HOH L 74 474 51 HOH HOH . 
E 4 HOH L 75 475 138 HOH HOH . 
E 4 HOH L 76 476 151 HOH HOH . 
E 4 HOH L 77 477 65 HOH HOH . 
E 4 HOH L 78 478 150 HOH HOH . 
E 4 HOH L 79 479 179 HOH HOH . 
E 4 HOH L 80 480 59 HOH HOH . 
E 4 HOH L 81 481 38 HOH HOH . 
E 4 HOH L 82 482 61 HOH HOH . 
E 4 HOH L 83 483 107 HOH HOH . 
E 4 HOH L 84 484 136 HOH HOH . 
E 4 HOH L 85 485 68 HOH HOH . 
E 4 HOH L 86 486 116 HOH HOH . 
E 4 HOH L 87 487 190 HOH HOH . 
E 4 HOH L 88 488 160 HOH HOH . 
E 4 HOH L 89 489 182 HOH HOH . 
E 4 HOH L 90 490 49 HOH HOH . 
E 4 HOH L 91 491 87 HOH HOH . 
E 4 HOH L 92 492 86 HOH HOH . 
E 4 HOH L 93 493 102 HOH HOH . 
E 4 HOH L 94 494 31 HOH HOH . 
E 4 HOH L 95 495 165 HOH HOH . 
E 4 HOH L 96 496 155 HOH HOH . 
E 4 HOH L 97 497 163 HOH HOH . 
E 4 HOH L 98 498 141 HOH HOH . 
E 4 HOH L 99 499 28 HOH HOH . 
E 4 HOH L 100 500 187 HOH HOH . 
E 4 HOH L 101 501 106 HOH HOH . 
E 4 HOH L 102 502 78 HOH HOH . 
E 4 HOH L 103 503 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEP . . . C 3 -11.166 -1.068 1.91 1 44.45 ? C1 DEP 301 L 1 
HETATM 2 C C2 DEP . . . C 3 -9.888 -1.349 1.151 1 40.63 ? C2 DEP 301 L 1 
HETATM 3 C C3 DEP . . . C 3 -13.394 2.846 0.337 1 51.76 ? C3 DEP 301 L 1 
HETATM 4 C C4 DEP . . . C 3 -12.636 4.156 0.327 1 54.32 ? C4 DEP 301 L 1 
HETATM 5 O O1 DEP . . . C 3 -11.638 0.236 1.58 1 48.6 ? O1 DEP 301 L 1 
HETATM 6 O O2 DEP . . . C 3 -13.208 2.199 1.594 1 53.3 ? O2 DEP 301 L 1 
HETATM 7 O O3 DEP . . . C 3 -13.926 0.024 0.533 1 39.92 ? O3 DEP 301 L 1 
HETATM 8 P P DEP . . . C 3 -13.205 0.592 1.694 1 46.55 ? P DEP 301 L 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#