data_6Y1N
#
_model_server_result.job_id            LtwOxCyucPk0cXDNnAyGUA 
_model_server_result.datetime_utc      '2024-11-27 00:01:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y1n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6Y1N 
#
_exptl.entry_id    6Y1N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              281.287 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '8-METHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL PHENYLPHOSPHONATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y1N 
_cell.length_a            86.528 
_cell.length_b            86.528 
_cell.length_c            104.874 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y1N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 145 H CYS 145 1_555 A SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B OH TYR 33 L TYR 33 1_555 C P XOP . L XOP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? 
#
_chem_comp.formula           'C14 H20 N O3 P' 
_chem_comp.formula_weight    281.287 
_chem_comp.id                XOP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '8-METHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL PHENYLPHOSPHONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 XOP doub 376 n y 
C1 C6 XOP sing 377 n y 
C1 P XOP sing 378 n n 
C3 C2 XOP sing 379 n y 
C2 H2 XOP sing 380 n n 
C3 C4 XOP doub 381 n y 
C3 H3 XOP sing 382 n n 
C4 C5 XOP sing 383 n y 
C4 H4 XOP sing 384 n n 
C5 C6 XOP doub 385 n y 
C5 H5 XOP sing 386 n n 
C6 H6 XOP sing 387 n n 
C13 C7 XOP sing 388 n n 
O2 C7 XOP sing 389 n n 
C8 C7 XOP sing 390 n n 
C7 H7 XOP sing 391 n n 
C9 C8 XOP sing 392 n n 
C8 H8 XOP sing 393 n n 
C8 H8A XOP sing 394 n n 
C10 C9 XOP sing 395 n n 
N C9 XOP sing 396 n n 
C9 H9 XOP sing 397 n n 
C14 N XOP sing 398 n n 
C12 N XOP sing 399 n n 
P O1 XOP doub 400 n n 
O3 HO3 XOP sing 401 n n 
O2 P XOP sing 402 n n 
O3 P XOP sing 403 n n 
C11 C10 XOP sing 404 n n 
C10 H10 XOP sing 405 n n 
C10 H10A XOP sing 406 n n 
C11 C12 XOP sing 407 n n 
C11 H11 XOP sing 408 n n 
C11 H11A XOP sing 409 n n 
C12 C13 XOP sing 410 n n 
C12 H12 XOP sing 411 n n 
C13 H13 XOP sing 412 n n 
C13 H13A XOP sing 413 n n 
C14 H14 XOP sing 414 n n 
C14 H14A XOP sing 415 n n 
C14 H14B XOP sing 416 n n 
#
_atom_sites.entry_id                     6Y1N 
_atom_sites.fract_transf_matrix[1][1]    0.011557 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011557 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 XOP L 1 301 1356 XOP XOP . 
D 4 HOH H 1 301 11 HOH HOH . 
D 4 HOH H 2 302 2 HOH HOH . 
D 4 HOH H 3 303 69 HOH HOH . 
D 4 HOH H 4 304 35 HOH HOH . 
D 4 HOH H 5 305 24 HOH HOH . 
D 4 HOH H 6 306 6 HOH HOH . 
D 4 HOH H 7 307 47 HOH HOH . 
D 4 HOH H 8 308 49 HOH HOH . 
D 4 HOH H 9 309 51 HOH HOH . 
D 4 HOH H 10 310 97 HOH HOH . 
D 4 HOH H 11 311 123 HOH HOH . 
D 4 HOH H 12 312 106 HOH HOH . 
D 4 HOH H 13 313 61 HOH HOH . 
D 4 HOH H 14 314 8 HOH HOH . 
D 4 HOH H 15 315 105 HOH HOH . 
D 4 HOH H 16 316 128 HOH HOH . 
D 4 HOH H 17 317 74 HOH HOH . 
D 4 HOH H 18 318 17 HOH HOH . 
D 4 HOH H 19 319 42 HOH HOH . 
D 4 HOH H 20 320 33 HOH HOH . 
D 4 HOH H 21 321 48 HOH HOH . 
D 4 HOH H 22 322 122 HOH HOH . 
D 4 HOH H 23 323 37 HOH HOH . 
D 4 HOH H 24 324 21 HOH HOH . 
D 4 HOH H 25 325 39 HOH HOH . 
D 4 HOH H 26 326 85 HOH HOH . 
D 4 HOH H 27 327 126 HOH HOH . 
D 4 HOH H 28 328 101 HOH HOH . 
D 4 HOH H 29 329 115 HOH HOH . 
D 4 HOH H 30 330 19 HOH HOH . 
D 4 HOH H 31 331 72 HOH HOH . 
D 4 HOH H 32 332 109 HOH HOH . 
D 4 HOH H 33 333 108 HOH HOH . 
D 4 HOH H 34 334 66 HOH HOH . 
D 4 HOH H 35 335 100 HOH HOH . 
D 4 HOH H 36 336 117 HOH HOH . 
D 4 HOH H 37 337 22 HOH HOH . 
D 4 HOH H 38 338 134 HOH HOH . 
D 4 HOH H 39 339 103 HOH HOH . 
D 4 HOH H 40 340 45 HOH HOH . 
D 4 HOH H 41 341 83 HOH HOH . 
D 4 HOH H 42 342 82 HOH HOH . 
D 4 HOH H 43 343 114 HOH HOH . 
D 4 HOH H 44 344 130 HOH HOH . 
D 4 HOH H 45 345 93 HOH HOH . 
D 4 HOH H 46 346 65 HOH HOH . 
D 4 HOH H 47 347 120 HOH HOH . 
D 4 HOH H 48 348 27 HOH HOH . 
D 4 HOH H 49 349 70 HOH HOH . 
D 4 HOH H 50 350 135 HOH HOH . 
D 4 HOH H 51 351 107 HOH HOH . 
D 4 HOH H 52 352 111 HOH HOH . 
D 4 HOH H 53 353 127 HOH HOH . 
D 4 HOH H 54 354 124 HOH HOH . 
D 4 HOH H 55 355 129 HOH HOH . 
D 4 HOH H 56 356 136 HOH HOH . 
E 4 HOH L 1 401 50 HOH HOH . 
E 4 HOH L 2 402 80 HOH HOH . 
E 4 HOH L 3 403 44 HOH HOH . 
E 4 HOH L 4 404 3 HOH HOH . 
E 4 HOH L 5 405 125 HOH HOH . 
E 4 HOH L 6 406 63 HOH HOH . 
E 4 HOH L 7 407 20 HOH HOH . 
E 4 HOH L 8 408 55 HOH HOH . 
E 4 HOH L 9 409 67 HOH HOH . 
E 4 HOH L 10 410 75 HOH HOH . 
E 4 HOH L 11 411 23 HOH HOH . 
E 4 HOH L 12 412 28 HOH HOH . 
E 4 HOH L 13 413 34 HOH HOH . 
E 4 HOH L 14 414 77 HOH HOH . 
E 4 HOH L 15 415 41 HOH HOH . 
E 4 HOH L 16 416 59 HOH HOH . 
E 4 HOH L 17 417 7 HOH HOH . 
E 4 HOH L 18 418 118 HOH HOH . 
E 4 HOH L 19 419 30 HOH HOH . 
E 4 HOH L 20 420 99 HOH HOH . 
E 4 HOH L 21 421 54 HOH HOH . 
E 4 HOH L 22 422 36 HOH HOH . 
E 4 HOH L 23 423 78 HOH HOH . 
E 4 HOH L 24 424 16 HOH HOH . 
E 4 HOH L 25 425 102 HOH HOH . 
E 4 HOH L 26 426 1 HOH HOH . 
E 4 HOH L 27 427 25 HOH HOH . 
E 4 HOH L 28 428 5 HOH HOH . 
E 4 HOH L 29 429 89 HOH HOH . 
E 4 HOH L 30 430 76 HOH HOH . 
E 4 HOH L 31 431 26 HOH HOH . 
E 4 HOH L 32 432 52 HOH HOH . 
E 4 HOH L 33 433 10 HOH HOH . 
E 4 HOH L 34 434 94 HOH HOH . 
E 4 HOH L 35 435 116 HOH HOH . 
E 4 HOH L 36 436 4 HOH HOH . 
E 4 HOH L 37 437 64 HOH HOH . 
E 4 HOH L 38 438 95 HOH HOH . 
E 4 HOH L 39 439 43 HOH HOH . 
E 4 HOH L 40 440 15 HOH HOH . 
E 4 HOH L 41 441 110 HOH HOH . 
E 4 HOH L 42 442 68 HOH HOH . 
E 4 HOH L 43 443 31 HOH HOH . 
E 4 HOH L 44 444 119 HOH HOH . 
E 4 HOH L 45 445 29 HOH HOH . 
E 4 HOH L 46 446 73 HOH HOH . 
E 4 HOH L 47 447 18 HOH HOH . 
E 4 HOH L 48 448 86 HOH HOH . 
E 4 HOH L 49 449 12 HOH HOH . 
E 4 HOH L 50 450 46 HOH HOH . 
E 4 HOH L 51 451 32 HOH HOH . 
E 4 HOH L 52 452 57 HOH HOH . 
E 4 HOH L 53 453 58 HOH HOH . 
E 4 HOH L 54 454 121 HOH HOH . 
E 4 HOH L 55 455 13 HOH HOH . 
E 4 HOH L 56 456 14 HOH HOH . 
E 4 HOH L 57 457 96 HOH HOH . 
E 4 HOH L 58 458 133 HOH HOH . 
E 4 HOH L 59 459 9 HOH HOH . 
E 4 HOH L 60 460 40 HOH HOH . 
E 4 HOH L 61 461 56 HOH HOH . 
E 4 HOH L 62 462 91 HOH HOH . 
E 4 HOH L 63 463 132 HOH HOH . 
E 4 HOH L 64 464 62 HOH HOH . 
E 4 HOH L 65 465 84 HOH HOH . 
E 4 HOH L 66 466 81 HOH HOH . 
E 4 HOH L 67 467 53 HOH HOH . 
E 4 HOH L 68 468 131 HOH HOH . 
E 4 HOH L 69 469 87 HOH HOH . 
E 4 HOH L 70 470 92 HOH HOH . 
E 4 HOH L 71 471 90 HOH HOH . 
E 4 HOH L 72 472 38 HOH HOH . 
E 4 HOH L 73 473 79 HOH HOH . 
E 4 HOH L 74 474 88 HOH HOH . 
E 4 HOH L 75 475 104 HOH HOH . 
E 4 HOH L 76 476 60 HOH HOH . 
E 4 HOH L 77 477 113 HOH HOH . 
E 4 HOH L 78 478 112 HOH HOH . 
E 4 HOH L 79 479 98 HOH HOH . 
E 4 HOH L 80 480 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XOP . . . C 3 -21.765 -5.296 -42.653 1 33.68 ? C1 XOP 301 L 1 
HETATM 2 C C2 XOP . . . C 3 -21.728 -4.804 -41.357 1 34.31 ? C2 XOP 301 L 1 
HETATM 3 C C3 XOP . . . C 3 -20.642 -4.055 -40.923 1 34.48 ? C3 XOP 301 L 1 
HETATM 4 C C4 XOP . . . C 3 -19.602 -3.776 -41.774 1 33.22 ? C4 XOP 301 L 1 
HETATM 5 C C5 XOP . . . C 3 -19.625 -4.253 -43.063 1 35.38 ? C5 XOP 301 L 1 
HETATM 6 C C6 XOP . . . C 3 -20.712 -4.99 -43.513 1 35.15 ? C6 XOP 301 L 1 
HETATM 7 C C7 XOP . . . C 3 -24.131 -4.069 -44.627 1 36.56 ? C7 XOP 301 L 1 
HETATM 8 C C8 XOP . . . C 3 -25.492 -3.725 -45.234 1 35.82 ? C8 XOP 301 L 1 
HETATM 9 C C9 XOP . . . C 3 -26.279 -2.74 -44.362 1 36.68 ? C9 XOP 301 L 1 
HETATM 10 N N XOP . . . C 3 -25.537 -1.479 -44.145 1 39.34 ? N XOP 301 L 1 
HETATM 11 O O1 XOP . . . C 3 -23.695 -7.213 -42.249 1 31.37 ? O1 XOP 301 L 1 
HETATM 12 O O2 XOP . . . C 3 -24.285 -5.107 -43.599 1 33.74 ? O2 XOP 301 L 1 
HETATM 13 P P XOP . . . C 3 -23.195 -6.217 -43.256 1 32.62 ? P XOP 301 L 1 
HETATM 14 C C10 XOP . . . C 3 -26.444 -3.236 -42.937 1 36.09 ? C10 XOP 301 L 1 
HETATM 15 C C11 XOP . . . C 3 -25.212 -2.669 -42.19 1 38.8 ? C11 XOP 301 L 1 
HETATM 16 C C12 XOP . . . C 3 -24.433 -1.917 -43.279 1 39.12 ? C12 XOP 301 L 1 
HETATM 17 C C13 XOP . . . C 3 -23.452 -2.828 -44.023 1 39.17 ? C13 XOP 301 L 1 
HETATM 18 C C14 XOP . . . C 3 -25.144 -0.734 -45.352 1 45.38 ? C14 XOP 301 L 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           797 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#