data_6Y1Q # _model_server_result.job_id mUxstkK9GiPbO2UePkG-jg _model_server_result.datetime_utc '2025-09-01 01:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6Y1Q # _exptl.entry_id 6Y1Q _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 144.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (CAPRYLIC ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 3 1_555 A SG CYS 13 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A N PRO 1 A PRO 2 1_555 B C1 OCA . A OCA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C ASN 4 A ASN 5 1_555 A N O6H 5 A O6H 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C O6H 5 A O6H 6 1_555 A N PHE 6 A PHE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C PHE 6 A PHE 7 1_555 A N DTR 7 A DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C DTR 7 A DTR 8 1_555 A N LYS 8 A LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id OCA _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (CAPRYLIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCA sing 114 n n C1 O1 OCA doub 115 n n C1 O2 OCA sing 116 n n C2 C3 OCA sing 117 n n C2 H21 OCA sing 118 n n C2 H22 OCA sing 119 n n C3 C4 OCA sing 120 n n C3 H31 OCA sing 121 n n C3 H32 OCA sing 122 n n C4 C5 OCA sing 123 n n C4 H41 OCA sing 124 n n C4 H42 OCA sing 125 n n C5 C6 OCA sing 126 n n C5 H51 OCA sing 127 n n C5 H52 OCA sing 128 n n C6 C7 OCA sing 129 n n C6 H61 OCA sing 130 n n C6 H62 OCA sing 131 n n C7 C8 OCA sing 132 n n C7 H71 OCA sing 133 n n C7 H72 OCA sing 134 n n C8 H81 OCA sing 135 n n C8 H82 OCA sing 136 n n C8 H83 OCA sing 137 n n O2 HO2 OCA sing 138 n n # _atom_sites.entry_id 6Y1Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id OCA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id OCA _pdbx_nonpoly_scheme.auth_mon_id OCT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCA . . . B 2 9.365 -2.486 0.099 1 15 ? C1 OCA 101 A 1 HETATM 2 C C2 OCA . . . B 2 8.975 -2.636 1.564 1 15 ? C2 OCA 101 A 1 HETATM 3 C C3 OCA . . . B 2 7.49 -2.905 1.761 1 15 ? C3 OCA 101 A 1 HETATM 4 C C4 OCA . . . B 2 7.202 -3.383 3.175 1 15 ? C4 OCA 101 A 1 HETATM 5 C C5 OCA . . . B 2 5.979 -2.702 3.766 1 15 ? C5 OCA 101 A 1 HETATM 6 C C6 OCA . . . B 2 6.21 -1.212 3.965 1 15 ? C6 OCA 101 A 1 HETATM 7 C C7 OCA . . . B 2 5.451 -0.679 5.172 1 15 ? C7 OCA 101 A 1 HETATM 8 C C8 OCA . . . B 2 5.945 -1.29 6.465 1 15 ? C8 OCA 101 A 1 HETATM 9 O O1 OCA . . . B 2 9.658 -3.433 -0.633 1 15 ? O1 OCA 101 A 1 HETATM 10 H H21 OCA . . . B 2 9.234 -1.725 2.084 1 15 ? H21 OCA 101 A 1 HETATM 11 H H22 OCA . . . B 2 9.533 -3.458 1.984 1 15 ? H22 OCA 101 A 1 HETATM 12 H H31 OCA . . . B 2 7.175 -3.666 1.063 1 15 ? H31 OCA 101 A 1 HETATM 13 H H32 OCA . . . B 2 6.94 -1.993 1.579 1 15 ? H32 OCA 101 A 1 HETATM 14 H H41 OCA . . . B 2 7.031 -4.449 3.155 1 15 ? H41 OCA 101 A 1 HETATM 15 H H42 OCA . . . B 2 8.057 -3.165 3.797 1 15 ? H42 OCA 101 A 1 HETATM 16 H H51 OCA . . . B 2 5.143 -2.842 3.098 1 15 ? H51 OCA 101 A 1 HETATM 17 H H52 OCA . . . B 2 5.757 -3.151 4.723 1 15 ? H52 OCA 101 A 1 HETATM 18 H H61 OCA . . . B 2 7.265 -1.04 4.111 1 15 ? H61 OCA 101 A 1 HETATM 19 H H62 OCA . . . B 2 5.877 -0.686 3.082 1 15 ? H62 OCA 101 A 1 HETATM 20 H H71 OCA . . . B 2 5.585 0.391 5.23 1 15 ? H71 OCA 101 A 1 HETATM 21 H H72 OCA . . . B 2 4.402 -0.912 5.064 1 15 ? H72 OCA 101 A 1 HETATM 22 H H81 OCA . . . B 2 5.111 -1.716 7.005 1 15 ? H81 OCA 101 A 1 HETATM 23 H H82 OCA . . . B 2 6.413 -0.526 7.068 1 15 ? H82 OCA 101 A 1 HETATM 24 H H83 OCA . . . B 2 6.664 -2.066 6.245 1 15 ? H83 OCA 101 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 7549 _model_server_stats.encode_time_ms 53 _model_server_stats.element_count 24 #