data_6Y1V
#
_model_server_result.job_id            HZnY7UW0N8RSPBXP4gNr4A 
_model_server_result.datetime_utc      '2024-11-15 15:01:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y1v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":404}' 
#
_entry.id    6Y1V 
#
_exptl.entry_id    6Y1V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6Y1V 
_cell.length_a            88.539 
_cell.length_b            88.539 
_cell.length_c            180.297 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y1V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 102 n n 
S C1 DMS sing 103 n n 
S C2 DMS sing 104 n n 
C1 H11 DMS sing 105 n n 
C1 H12 DMS sing 106 n n 
C1 H13 DMS sing 107 n n 
C2 H21 DMS sing 108 n n 
C2 H22 DMS sing 109 n n 
C2 H23 DMS sing 110 n n 
#
_atom_sites.entry_id                     6Y1V 
_atom_sites.fract_transf_matrix[1][1]    0.011294 
_atom_sites.fract_transf_matrix[1][2]    0.006521 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 401 1 DMS DM1 . 
D 2 DMS A 1 402 9 DMS DM1 . 
E 2 DMS A 1 403 10 DMS DM1 . 
F 2 DMS A 1 404 11 DMS DM1 . 
G 2 DMS A 1 405 12 DMS DM1 . 
H 3 GSP A 1 406 401 GSP GSP . 
I 2 DMS B 1 401 2 DMS DM1 . 
J 2 DMS B 1 402 3 DMS DM1 . 
K 2 DMS B 1 403 4 DMS DM1 . 
L 2 DMS B 1 404 5 DMS DM1 . 
M 2 DMS B 1 405 6 DMS DM1 . 
N 2 DMS B 1 406 7 DMS DM1 . 
O 2 DMS B 1 407 8 DMS DM1 . 
P 4 4HC B 1 408 401 4HC COU . 
Q 5 HOH A 1 501 242 HOH HOH . 
Q 5 HOH A 2 502 250 HOH HOH . 
Q 5 HOH A 3 503 78 HOH HOH . 
Q 5 HOH A 4 504 347 HOH HOH . 
Q 5 HOH A 5 505 296 HOH HOH . 
Q 5 HOH A 6 506 34 HOH HOH . 
Q 5 HOH A 7 507 304 HOH HOH . 
Q 5 HOH A 8 508 346 HOH HOH . 
Q 5 HOH A 9 509 71 HOH HOH . 
Q 5 HOH A 10 510 339 HOH HOH . 
Q 5 HOH A 11 511 293 HOH HOH . 
Q 5 HOH A 12 512 354 HOH HOH . 
Q 5 HOH A 13 513 4 HOH HOH . 
Q 5 HOH A 14 514 267 HOH HOH . 
Q 5 HOH A 15 515 229 HOH HOH . 
Q 5 HOH A 16 516 352 HOH HOH . 
Q 5 HOH A 17 517 1 HOH HOH . 
Q 5 HOH A 18 518 238 HOH HOH . 
Q 5 HOH A 19 519 31 HOH HOH . 
Q 5 HOH A 20 520 330 HOH HOH . 
Q 5 HOH A 21 521 35 HOH HOH . 
Q 5 HOH A 22 522 306 HOH HOH . 
Q 5 HOH A 23 523 45 HOH HOH . 
Q 5 HOH A 24 524 41 HOH HOH . 
Q 5 HOH A 25 525 14 HOH HOH . 
Q 5 HOH A 26 526 287 HOH HOH . 
Q 5 HOH A 27 527 76 HOH HOH . 
Q 5 HOH A 28 528 28 HOH HOH . 
Q 5 HOH A 29 529 2 HOH HOH . 
Q 5 HOH A 30 530 95 HOH HOH . 
Q 5 HOH A 31 531 66 HOH HOH . 
Q 5 HOH A 32 532 336 HOH HOH . 
Q 5 HOH A 33 533 112 HOH HOH . 
Q 5 HOH A 34 534 284 HOH HOH . 
Q 5 HOH A 35 535 273 HOH HOH . 
Q 5 HOH A 36 536 335 HOH HOH . 
Q 5 HOH A 37 537 289 HOH HOH . 
Q 5 HOH A 38 538 297 HOH HOH . 
Q 5 HOH A 39 539 56 HOH HOH . 
Q 5 HOH A 40 540 309 HOH HOH . 
Q 5 HOH A 41 541 75 HOH HOH . 
Q 5 HOH A 42 542 93 HOH HOH . 
Q 5 HOH A 43 543 55 HOH HOH . 
Q 5 HOH A 44 544 237 HOH HOH . 
Q 5 HOH A 45 545 213 HOH HOH . 
Q 5 HOH A 46 546 334 HOH HOH . 
Q 5 HOH A 47 547 5 HOH HOH . 
Q 5 HOH A 48 548 8 HOH HOH . 
Q 5 HOH A 49 549 333 HOH HOH . 
Q 5 HOH A 50 550 348 HOH HOH . 
Q 5 HOH A 51 551 212 HOH HOH . 
Q 5 HOH A 52 552 298 HOH HOH . 
Q 5 HOH A 53 553 300 HOH HOH . 
Q 5 HOH A 54 554 351 HOH HOH . 
Q 5 HOH A 55 555 81 HOH HOH . 
Q 5 HOH A 56 556 266 HOH HOH . 
Q 5 HOH A 57 557 232 HOH HOH . 
Q 5 HOH A 58 558 12 HOH HOH . 
Q 5 HOH A 59 559 79 HOH HOH . 
Q 5 HOH A 60 560 275 HOH HOH . 
Q 5 HOH A 61 561 96 HOH HOH . 
Q 5 HOH A 62 562 328 HOH HOH . 
Q 5 HOH A 63 563 60 HOH HOH . 
Q 5 HOH A 64 564 344 HOH HOH . 
Q 5 HOH A 65 565 15 HOH HOH . 
Q 5 HOH A 66 566 62 HOH HOH . 
Q 5 HOH A 67 567 235 HOH HOH . 
Q 5 HOH A 68 568 286 HOH HOH . 
Q 5 HOH A 69 569 216 HOH HOH . 
Q 5 HOH A 70 570 285 HOH HOH . 
Q 5 HOH A 71 571 342 HOH HOH . 
Q 5 HOH A 72 572 349 HOH HOH . 
Q 5 HOH A 73 573 114 HOH HOH . 
Q 5 HOH A 74 574 331 HOH HOH . 
Q 5 HOH A 75 575 99 HOH HOH . 
Q 5 HOH A 76 576 329 HOH HOH . 
Q 5 HOH A 77 577 340 HOH HOH . 
Q 5 HOH A 78 578 215 HOH HOH . 
Q 5 HOH A 79 579 246 HOH HOH . 
Q 5 HOH A 80 580 51 HOH HOH . 
Q 5 HOH A 81 581 149 HOH HOH . 
Q 5 HOH A 82 582 283 HOH HOH . 
Q 5 HOH A 83 583 243 HOH HOH . 
Q 5 HOH A 84 584 343 HOH HOH . 
Q 5 HOH A 85 585 337 HOH HOH . 
Q 5 HOH A 86 586 288 HOH HOH . 
Q 5 HOH A 87 587 69 HOH HOH . 
Q 5 HOH A 88 588 59 HOH HOH . 
Q 5 HOH A 89 589 353 HOH HOH . 
Q 5 HOH A 90 590 49 HOH HOH . 
Q 5 HOH A 91 591 240 HOH HOH . 
Q 5 HOH A 92 592 301 HOH HOH . 
Q 5 HOH A 93 593 291 HOH HOH . 
Q 5 HOH A 94 594 36 HOH HOH . 
Q 5 HOH A 95 595 208 HOH HOH . 
Q 5 HOH A 96 596 268 HOH HOH . 
Q 5 HOH A 97 597 308 HOH HOH . 
Q 5 HOH A 98 598 302 HOH HOH . 
Q 5 HOH A 99 599 17 HOH HOH . 
Q 5 HOH A 100 600 356 HOH HOH . 
Q 5 HOH A 101 601 271 HOH HOH . 
Q 5 HOH A 102 602 345 HOH HOH . 
Q 5 HOH A 103 603 332 HOH HOH . 
Q 5 HOH A 104 604 355 HOH HOH . 
Q 5 HOH A 105 605 217 HOH HOH . 
Q 5 HOH A 106 606 310 HOH HOH . 
Q 5 HOH A 107 607 294 HOH HOH . 
Q 5 HOH A 108 608 209 HOH HOH . 
Q 5 HOH A 109 609 269 HOH HOH . 
Q 5 HOH A 110 610 272 HOH HOH . 
Q 5 HOH A 111 611 241 HOH HOH . 
Q 5 HOH A 112 612 207 HOH HOH . 
Q 5 HOH A 113 613 245 HOH HOH . 
Q 5 HOH A 114 614 61 HOH HOH . 
Q 5 HOH A 115 615 274 HOH HOH . 
Q 5 HOH A 116 616 270 HOH HOH . 
Q 5 HOH A 117 617 219 HOH HOH . 
Q 5 HOH A 118 618 350 HOH HOH . 
Q 5 HOH A 119 619 292 HOH HOH . 
Q 5 HOH A 120 620 276 HOH HOH . 
Q 5 HOH A 121 621 282 HOH HOH . 
Q 5 HOH A 122 622 227 HOH HOH . 
Q 5 HOH A 123 623 233 HOH HOH . 
Q 5 HOH A 124 624 299 HOH HOH . 
Q 5 HOH A 125 625 305 HOH HOH . 
Q 5 HOH A 126 626 357 HOH HOH . 
Q 5 HOH A 127 627 234 HOH HOH . 
R 5 HOH B 1 501 307 HOH HOH . 
R 5 HOH B 2 502 322 HOH HOH . 
R 5 HOH B 3 503 325 HOH HOH . 
R 5 HOH B 4 504 222 HOH HOH . 
R 5 HOH B 5 505 89 HOH HOH . 
R 5 HOH B 6 506 327 HOH HOH . 
R 5 HOH B 7 507 365 HOH HOH . 
R 5 HOH B 8 508 26 HOH HOH . 
R 5 HOH B 9 509 359 HOH HOH . 
R 5 HOH B 10 510 263 HOH HOH . 
R 5 HOH B 11 511 236 HOH HOH . 
R 5 HOH B 12 512 370 HOH HOH . 
R 5 HOH B 13 513 231 HOH HOH . 
R 5 HOH B 14 514 91 HOH HOH . 
R 5 HOH B 15 515 360 HOH HOH . 
R 5 HOH B 16 516 280 HOH HOH . 
R 5 HOH B 17 517 341 HOH HOH . 
R 5 HOH B 18 518 10 HOH HOH . 
R 5 HOH B 19 519 63 HOH HOH . 
R 5 HOH B 20 520 290 HOH HOH . 
R 5 HOH B 21 521 40 HOH HOH . 
R 5 HOH B 22 522 20 HOH HOH . 
R 5 HOH B 23 523 369 HOH HOH . 
R 5 HOH B 24 524 316 HOH HOH . 
R 5 HOH B 25 525 64 HOH HOH . 
R 5 HOH B 26 526 3 HOH HOH . 
R 5 HOH B 27 527 224 HOH HOH . 
R 5 HOH B 28 528 223 HOH HOH . 
R 5 HOH B 29 529 53 HOH HOH . 
R 5 HOH B 30 530 312 HOH HOH . 
R 5 HOH B 31 531 257 HOH HOH . 
R 5 HOH B 32 532 27 HOH HOH . 
R 5 HOH B 33 533 258 HOH HOH . 
R 5 HOH B 34 534 19 HOH HOH . 
R 5 HOH B 35 535 22 HOH HOH . 
R 5 HOH B 36 536 9 HOH HOH . 
R 5 HOH B 37 537 21 HOH HOH . 
R 5 HOH B 38 538 73 HOH HOH . 
R 5 HOH B 39 539 7 HOH HOH . 
R 5 HOH B 40 540 44 HOH HOH . 
R 5 HOH B 41 541 220 HOH HOH . 
R 5 HOH B 42 542 256 HOH HOH . 
R 5 HOH B 43 543 42 HOH HOH . 
R 5 HOH B 44 544 24 HOH HOH . 
R 5 HOH B 45 545 110 HOH HOH . 
R 5 HOH B 46 546 46 HOH HOH . 
R 5 HOH B 47 547 16 HOH HOH . 
R 5 HOH B 48 548 211 HOH HOH . 
R 5 HOH B 49 549 6 HOH HOH . 
R 5 HOH B 50 550 97 HOH HOH . 
R 5 HOH B 51 551 281 HOH HOH . 
R 5 HOH B 52 552 38 HOH HOH . 
R 5 HOH B 53 553 221 HOH HOH . 
R 5 HOH B 54 554 37 HOH HOH . 
R 5 HOH B 55 555 102 HOH HOH . 
R 5 HOH B 56 556 326 HOH HOH . 
R 5 HOH B 57 557 249 HOH HOH . 
R 5 HOH B 58 558 68 HOH HOH . 
R 5 HOH B 59 559 323 HOH HOH . 
R 5 HOH B 60 560 54 HOH HOH . 
R 5 HOH B 61 561 88 HOH HOH . 
R 5 HOH B 62 562 101 HOH HOH . 
R 5 HOH B 63 563 13 HOH HOH . 
R 5 HOH B 64 564 367 HOH HOH . 
R 5 HOH B 65 565 366 HOH HOH . 
R 5 HOH B 66 566 277 HOH HOH . 
R 5 HOH B 67 567 278 HOH HOH . 
R 5 HOH B 68 568 225 HOH HOH . 
R 5 HOH B 69 569 92 HOH HOH . 
R 5 HOH B 70 570 65 HOH HOH . 
R 5 HOH B 71 571 358 HOH HOH . 
R 5 HOH B 72 572 122 HOH HOH . 
R 5 HOH B 73 573 104 HOH HOH . 
R 5 HOH B 74 574 364 HOH HOH . 
R 5 HOH B 75 575 314 HOH HOH . 
R 5 HOH B 76 576 108 HOH HOH . 
R 5 HOH B 77 577 39 HOH HOH . 
R 5 HOH B 78 578 85 HOH HOH . 
R 5 HOH B 79 579 315 HOH HOH . 
R 5 HOH B 80 580 368 HOH HOH . 
R 5 HOH B 81 581 361 HOH HOH . 
R 5 HOH B 82 582 317 HOH HOH . 
R 5 HOH B 83 583 18 HOH HOH . 
R 5 HOH B 84 584 362 HOH HOH . 
R 5 HOH B 85 585 248 HOH HOH . 
R 5 HOH B 86 586 254 HOH HOH . 
R 5 HOH B 87 587 260 HOH HOH . 
R 5 HOH B 88 588 318 HOH HOH . 
R 5 HOH B 89 589 264 HOH HOH . 
R 5 HOH B 90 590 363 HOH HOH . 
R 5 HOH B 91 591 261 HOH HOH . 
R 5 HOH B 92 592 319 HOH HOH . 
R 5 HOH B 93 593 295 HOH HOH . 
R 5 HOH B 94 594 311 HOH HOH . 
R 5 HOH B 95 595 253 HOH HOH . 
R 5 HOH B 96 596 279 HOH HOH . 
R 5 HOH B 97 597 321 HOH HOH . 
R 5 HOH B 98 598 230 HOH HOH . 
R 5 HOH B 99 599 203 HOH HOH . 
R 5 HOH B 100 600 313 HOH HOH . 
R 5 HOH B 101 601 320 HOH HOH . 
R 5 HOH B 102 602 205 HOH HOH . 
R 5 HOH B 103 603 255 HOH HOH . 
R 5 HOH B 104 604 303 HOH HOH . 
R 5 HOH B 105 605 338 HOH HOH . 
R 5 HOH B 106 606 324 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . L 2 13.925 -45.405 15.705 1 99.05 ? S DMS 404 B 1 
HETATM 2 O O DMS . . . L 2 15.247 -46.091 15.722 1 57.34 ? O DMS 404 B 1 
HETATM 3 C C1 DMS . . . L 2 12.46 -46.175 14.939 1 69.21 ? C1 DMS 404 B 1 
HETATM 4 C C2 DMS . . . L 2 13.723 -43.76 16.473 1 67.52 ? C2 DMS 404 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#