data_6Y1V # _model_server_result.job_id AKdVyDxHPUtqGZ7WEoJCAw _model_server_result.datetime_utc '2024-11-15 15:04:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":408}' # _entry.id 6Y1V # _exptl.entry_id 6Y1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXY-2H-CHROMEN-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y1V _cell.length_a 88.539 _cell.length_b 88.539 _cell.length_c 180.297 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H6 O3' _chem_comp.formula_weight 162.142 _chem_comp.id 4HC _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXY-2H-CHROMEN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-HYDROXY-1-BENZOPYRAN-2-ONE;4-HYDROXYCOUMARIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CA2 4HC sing 1 n y CA CA6 4HC doub 2 n y CA HA 4HC sing 3 n n CA2 OA2 4HC doub 4 n n CA2 OA3 4HC sing 5 n y CA4 CA5 4HC doub 6 n y CA4 CD1 4HC sing 7 n y CA4 OA3 4HC sing 8 n y CA5 CA6 4HC sing 9 n y CA5 CD4 4HC sing 10 n y CA6 OA6 4HC sing 11 n n CD1 CD2 4HC doub 12 n y CD1 HD1 4HC sing 13 n n CD2 CD3 4HC sing 14 n y CD2 HD2 4HC sing 15 n n CD3 CD4 4HC doub 16 n y CD3 HD3 4HC sing 17 n n CD4 HD4 4HC sing 18 n n OA6 HA6 4HC sing 19 n n # _atom_sites.entry_id 6Y1V _atom_sites.fract_transf_matrix[1][1] 0.011294 _atom_sites.fract_transf_matrix[1][2] 0.006521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 1 DMS DM1 . D 2 DMS A 1 402 9 DMS DM1 . E 2 DMS A 1 403 10 DMS DM1 . F 2 DMS A 1 404 11 DMS DM1 . G 2 DMS A 1 405 12 DMS DM1 . H 3 GSP A 1 406 401 GSP GSP . I 2 DMS B 1 401 2 DMS DM1 . J 2 DMS B 1 402 3 DMS DM1 . K 2 DMS B 1 403 4 DMS DM1 . L 2 DMS B 1 404 5 DMS DM1 . M 2 DMS B 1 405 6 DMS DM1 . N 2 DMS B 1 406 7 DMS DM1 . O 2 DMS B 1 407 8 DMS DM1 . P 4 4HC B 1 408 401 4HC COU . Q 5 HOH A 1 501 242 HOH HOH . Q 5 HOH A 2 502 250 HOH HOH . Q 5 HOH A 3 503 78 HOH HOH . Q 5 HOH A 4 504 347 HOH HOH . Q 5 HOH A 5 505 296 HOH HOH . Q 5 HOH A 6 506 34 HOH HOH . Q 5 HOH A 7 507 304 HOH HOH . Q 5 HOH A 8 508 346 HOH HOH . Q 5 HOH A 9 509 71 HOH HOH . Q 5 HOH A 10 510 339 HOH HOH . Q 5 HOH A 11 511 293 HOH HOH . Q 5 HOH A 12 512 354 HOH HOH . Q 5 HOH A 13 513 4 HOH HOH . Q 5 HOH A 14 514 267 HOH HOH . Q 5 HOH A 15 515 229 HOH HOH . Q 5 HOH A 16 516 352 HOH HOH . Q 5 HOH A 17 517 1 HOH HOH . Q 5 HOH A 18 518 238 HOH HOH . Q 5 HOH A 19 519 31 HOH HOH . Q 5 HOH A 20 520 330 HOH HOH . Q 5 HOH A 21 521 35 HOH HOH . Q 5 HOH A 22 522 306 HOH HOH . Q 5 HOH A 23 523 45 HOH HOH . Q 5 HOH A 24 524 41 HOH HOH . Q 5 HOH A 25 525 14 HOH HOH . Q 5 HOH A 26 526 287 HOH HOH . Q 5 HOH A 27 527 76 HOH HOH . Q 5 HOH A 28 528 28 HOH HOH . Q 5 HOH A 29 529 2 HOH HOH . Q 5 HOH A 30 530 95 HOH HOH . Q 5 HOH A 31 531 66 HOH HOH . Q 5 HOH A 32 532 336 HOH HOH . Q 5 HOH A 33 533 112 HOH HOH . Q 5 HOH A 34 534 284 HOH HOH . Q 5 HOH A 35 535 273 HOH HOH . Q 5 HOH A 36 536 335 HOH HOH . Q 5 HOH A 37 537 289 HOH HOH . Q 5 HOH A 38 538 297 HOH HOH . Q 5 HOH A 39 539 56 HOH HOH . Q 5 HOH A 40 540 309 HOH HOH . Q 5 HOH A 41 541 75 HOH HOH . Q 5 HOH A 42 542 93 HOH HOH . Q 5 HOH A 43 543 55 HOH HOH . Q 5 HOH A 44 544 237 HOH HOH . Q 5 HOH A 45 545 213 HOH HOH . Q 5 HOH A 46 546 334 HOH HOH . Q 5 HOH A 47 547 5 HOH HOH . Q 5 HOH A 48 548 8 HOH HOH . Q 5 HOH A 49 549 333 HOH HOH . Q 5 HOH A 50 550 348 HOH HOH . Q 5 HOH A 51 551 212 HOH HOH . Q 5 HOH A 52 552 298 HOH HOH . Q 5 HOH A 53 553 300 HOH HOH . Q 5 HOH A 54 554 351 HOH HOH . Q 5 HOH A 55 555 81 HOH HOH . Q 5 HOH A 56 556 266 HOH HOH . Q 5 HOH A 57 557 232 HOH HOH . Q 5 HOH A 58 558 12 HOH HOH . Q 5 HOH A 59 559 79 HOH HOH . Q 5 HOH A 60 560 275 HOH HOH . Q 5 HOH A 61 561 96 HOH HOH . Q 5 HOH A 62 562 328 HOH HOH . Q 5 HOH A 63 563 60 HOH HOH . Q 5 HOH A 64 564 344 HOH HOH . Q 5 HOH A 65 565 15 HOH HOH . Q 5 HOH A 66 566 62 HOH HOH . Q 5 HOH A 67 567 235 HOH HOH . Q 5 HOH A 68 568 286 HOH HOH . Q 5 HOH A 69 569 216 HOH HOH . Q 5 HOH A 70 570 285 HOH HOH . Q 5 HOH A 71 571 342 HOH HOH . Q 5 HOH A 72 572 349 HOH HOH . Q 5 HOH A 73 573 114 HOH HOH . Q 5 HOH A 74 574 331 HOH HOH . Q 5 HOH A 75 575 99 HOH HOH . Q 5 HOH A 76 576 329 HOH HOH . Q 5 HOH A 77 577 340 HOH HOH . Q 5 HOH A 78 578 215 HOH HOH . Q 5 HOH A 79 579 246 HOH HOH . Q 5 HOH A 80 580 51 HOH HOH . Q 5 HOH A 81 581 149 HOH HOH . Q 5 HOH A 82 582 283 HOH HOH . Q 5 HOH A 83 583 243 HOH HOH . Q 5 HOH A 84 584 343 HOH HOH . Q 5 HOH A 85 585 337 HOH HOH . Q 5 HOH A 86 586 288 HOH HOH . Q 5 HOH A 87 587 69 HOH HOH . Q 5 HOH A 88 588 59 HOH HOH . Q 5 HOH A 89 589 353 HOH HOH . Q 5 HOH A 90 590 49 HOH HOH . Q 5 HOH A 91 591 240 HOH HOH . Q 5 HOH A 92 592 301 HOH HOH . Q 5 HOH A 93 593 291 HOH HOH . Q 5 HOH A 94 594 36 HOH HOH . Q 5 HOH A 95 595 208 HOH HOH . Q 5 HOH A 96 596 268 HOH HOH . Q 5 HOH A 97 597 308 HOH HOH . Q 5 HOH A 98 598 302 HOH HOH . Q 5 HOH A 99 599 17 HOH HOH . Q 5 HOH A 100 600 356 HOH HOH . Q 5 HOH A 101 601 271 HOH HOH . Q 5 HOH A 102 602 345 HOH HOH . Q 5 HOH A 103 603 332 HOH HOH . Q 5 HOH A 104 604 355 HOH HOH . Q 5 HOH A 105 605 217 HOH HOH . Q 5 HOH A 106 606 310 HOH HOH . Q 5 HOH A 107 607 294 HOH HOH . Q 5 HOH A 108 608 209 HOH HOH . Q 5 HOH A 109 609 269 HOH HOH . Q 5 HOH A 110 610 272 HOH HOH . Q 5 HOH A 111 611 241 HOH HOH . Q 5 HOH A 112 612 207 HOH HOH . Q 5 HOH A 113 613 245 HOH HOH . Q 5 HOH A 114 614 61 HOH HOH . Q 5 HOH A 115 615 274 HOH HOH . Q 5 HOH A 116 616 270 HOH HOH . Q 5 HOH A 117 617 219 HOH HOH . Q 5 HOH A 118 618 350 HOH HOH . Q 5 HOH A 119 619 292 HOH HOH . Q 5 HOH A 120 620 276 HOH HOH . Q 5 HOH A 121 621 282 HOH HOH . Q 5 HOH A 122 622 227 HOH HOH . Q 5 HOH A 123 623 233 HOH HOH . Q 5 HOH A 124 624 299 HOH HOH . Q 5 HOH A 125 625 305 HOH HOH . Q 5 HOH A 126 626 357 HOH HOH . Q 5 HOH A 127 627 234 HOH HOH . R 5 HOH B 1 501 307 HOH HOH . R 5 HOH B 2 502 322 HOH HOH . R 5 HOH B 3 503 325 HOH HOH . R 5 HOH B 4 504 222 HOH HOH . R 5 HOH B 5 505 89 HOH HOH . R 5 HOH B 6 506 327 HOH HOH . R 5 HOH B 7 507 365 HOH HOH . R 5 HOH B 8 508 26 HOH HOH . R 5 HOH B 9 509 359 HOH HOH . R 5 HOH B 10 510 263 HOH HOH . R 5 HOH B 11 511 236 HOH HOH . R 5 HOH B 12 512 370 HOH HOH . R 5 HOH B 13 513 231 HOH HOH . R 5 HOH B 14 514 91 HOH HOH . R 5 HOH B 15 515 360 HOH HOH . R 5 HOH B 16 516 280 HOH HOH . R 5 HOH B 17 517 341 HOH HOH . R 5 HOH B 18 518 10 HOH HOH . R 5 HOH B 19 519 63 HOH HOH . R 5 HOH B 20 520 290 HOH HOH . R 5 HOH B 21 521 40 HOH HOH . R 5 HOH B 22 522 20 HOH HOH . R 5 HOH B 23 523 369 HOH HOH . R 5 HOH B 24 524 316 HOH HOH . R 5 HOH B 25 525 64 HOH HOH . R 5 HOH B 26 526 3 HOH HOH . R 5 HOH B 27 527 224 HOH HOH . R 5 HOH B 28 528 223 HOH HOH . R 5 HOH B 29 529 53 HOH HOH . R 5 HOH B 30 530 312 HOH HOH . R 5 HOH B 31 531 257 HOH HOH . R 5 HOH B 32 532 27 HOH HOH . R 5 HOH B 33 533 258 HOH HOH . R 5 HOH B 34 534 19 HOH HOH . R 5 HOH B 35 535 22 HOH HOH . R 5 HOH B 36 536 9 HOH HOH . R 5 HOH B 37 537 21 HOH HOH . R 5 HOH B 38 538 73 HOH HOH . R 5 HOH B 39 539 7 HOH HOH . R 5 HOH B 40 540 44 HOH HOH . R 5 HOH B 41 541 220 HOH HOH . R 5 HOH B 42 542 256 HOH HOH . R 5 HOH B 43 543 42 HOH HOH . R 5 HOH B 44 544 24 HOH HOH . R 5 HOH B 45 545 110 HOH HOH . R 5 HOH B 46 546 46 HOH HOH . R 5 HOH B 47 547 16 HOH HOH . R 5 HOH B 48 548 211 HOH HOH . R 5 HOH B 49 549 6 HOH HOH . R 5 HOH B 50 550 97 HOH HOH . R 5 HOH B 51 551 281 HOH HOH . R 5 HOH B 52 552 38 HOH HOH . R 5 HOH B 53 553 221 HOH HOH . R 5 HOH B 54 554 37 HOH HOH . R 5 HOH B 55 555 102 HOH HOH . R 5 HOH B 56 556 326 HOH HOH . R 5 HOH B 57 557 249 HOH HOH . R 5 HOH B 58 558 68 HOH HOH . R 5 HOH B 59 559 323 HOH HOH . R 5 HOH B 60 560 54 HOH HOH . R 5 HOH B 61 561 88 HOH HOH . R 5 HOH B 62 562 101 HOH HOH . R 5 HOH B 63 563 13 HOH HOH . R 5 HOH B 64 564 367 HOH HOH . R 5 HOH B 65 565 366 HOH HOH . R 5 HOH B 66 566 277 HOH HOH . R 5 HOH B 67 567 278 HOH HOH . R 5 HOH B 68 568 225 HOH HOH . R 5 HOH B 69 569 92 HOH HOH . R 5 HOH B 70 570 65 HOH HOH . R 5 HOH B 71 571 358 HOH HOH . R 5 HOH B 72 572 122 HOH HOH . R 5 HOH B 73 573 104 HOH HOH . R 5 HOH B 74 574 364 HOH HOH . R 5 HOH B 75 575 314 HOH HOH . R 5 HOH B 76 576 108 HOH HOH . R 5 HOH B 77 577 39 HOH HOH . R 5 HOH B 78 578 85 HOH HOH . R 5 HOH B 79 579 315 HOH HOH . R 5 HOH B 80 580 368 HOH HOH . R 5 HOH B 81 581 361 HOH HOH . R 5 HOH B 82 582 317 HOH HOH . R 5 HOH B 83 583 18 HOH HOH . R 5 HOH B 84 584 362 HOH HOH . R 5 HOH B 85 585 248 HOH HOH . R 5 HOH B 86 586 254 HOH HOH . R 5 HOH B 87 587 260 HOH HOH . R 5 HOH B 88 588 318 HOH HOH . R 5 HOH B 89 589 264 HOH HOH . R 5 HOH B 90 590 363 HOH HOH . R 5 HOH B 91 591 261 HOH HOH . R 5 HOH B 92 592 319 HOH HOH . R 5 HOH B 93 593 295 HOH HOH . R 5 HOH B 94 594 311 HOH HOH . R 5 HOH B 95 595 253 HOH HOH . R 5 HOH B 96 596 279 HOH HOH . R 5 HOH B 97 597 321 HOH HOH . R 5 HOH B 98 598 230 HOH HOH . R 5 HOH B 99 599 203 HOH HOH . R 5 HOH B 100 600 313 HOH HOH . R 5 HOH B 101 601 320 HOH HOH . R 5 HOH B 102 602 205 HOH HOH . R 5 HOH B 103 603 255 HOH HOH . R 5 HOH B 104 604 303 HOH HOH . R 5 HOH B 105 605 338 HOH HOH . R 5 HOH B 106 606 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 4HC . . . P 4 40.384 -37.663 9.497 1 39.52 ? CA 4HC 408 B 1 HETATM 2 C CA2 4HC . . . P 4 40.063 -36.467 10.318 1 42.33 ? CA2 4HC 408 B 1 HETATM 3 C CA4 4HC . . . P 4 37.872 -36.197 9.12 1 40.89 ? CA4 4HC 408 B 1 HETATM 4 C CA5 4HC . . . P 4 38.174 -37.319 8.299 1 43.17 ? CA5 4HC 408 B 1 HETATM 5 C CA6 4HC . . . P 4 39.467 -38.088 8.471 1 41.68 ? CA6 4HC 408 B 1 HETATM 6 C CD1 4HC . . . P 4 36.684 -35.464 8.995 1 39.4 ? CD1 4HC 408 B 1 HETATM 7 C CD2 4HC . . . P 4 35.755 -35.841 8.022 1 37.98 ? CD2 4HC 408 B 1 HETATM 8 C CD3 4HC . . . P 4 36.048 -36.961 7.196 1 42.33 ? CD3 4HC 408 B 1 HETATM 9 C CD4 4HC . . . P 4 37.238 -37.708 7.328 1 40.32 ? CD4 4HC 408 B 1 HETATM 10 O OA2 4HC . . . P 4 40.805 -36.049 11.143 1 44.76 ? OA2 4HC 408 B 1 HETATM 11 O OA3 4HC . . . P 4 38.831 -35.77 10.151 1 47.87 ? OA3 4HC 408 B 1 HETATM 12 O OA6 4HC . . . P 4 39.566 -39.39 7.952 1 52.14 ? OA6 4HC 408 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #