data_6Y2C # _model_server_result.job_id PsV4UXuPsiH1bE4XBEvQQQ _model_server_result.datetime_utc '2024-11-23 00:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":405}' # _entry.id 6Y2C # _exptl.entry_id 6Y2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y2C _cell.length_a 47.409 _cell.length_b 47.409 _cell.length_c 147.893 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,N 1 1 B,F,G,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 46 A ASP 304 1_555 M ZN ZN . B ZN 408 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A NE2 HIS 76 A HIS 334 1_555 M ZN ZN . B ZN 408 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc3 A OE1 GLU 79 A GLU 337 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc4 A OD2 ASP 83 A ASP 341 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 E ZN ZN . A ZN 503 1_555 N O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 E ZN ZN . A ZN 503 4_655 B OE1 GLU 79 B GLU 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 E ZN ZN . A ZN 503 4_655 B OE2 GLU 79 B GLU 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 B N SER 1 B SER 259 1_555 L ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc9 B O SER 1 B SER 259 1_555 L ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 B OD2 ASP 46 B ASP 304 1_555 L ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc11 B NE2 HIS 76 B HIS 334 1_555 L ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc12 B OD2 ASP 83 B ASP 341 1_555 M ZN ZN . B ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc13 L ZN ZN . B ZN 407 1_555 O O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 M ZN ZN . B ZN 408 1_555 O O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6Y2C _atom_sites.fract_transf_matrix[1][1] 0.021093 _atom_sites.fract_transf_matrix[1][2] 0.012178 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 501 EDO EDO . D 2 EDO A 1 502 601 EDO EDO . E 3 ZN A 1 503 3 ZN ZN . F 2 EDO B 1 401 401 EDO EDO . G 2 EDO B 1 402 501 EDO EDO . H 2 EDO B 1 403 601 EDO EDO . I 2 EDO B 1 404 701 EDO EDO . J 2 EDO B 1 405 801 EDO EDO . K 2 EDO B 1 406 901 EDO EDO . L 3 ZN B 1 407 1 ZN ZN . M 3 ZN B 1 408 4 ZN ZN . N 4 HOH A 1 601 40 HOH HOH . N 4 HOH A 2 602 33 HOH HOH . N 4 HOH A 3 603 13 HOH HOH . N 4 HOH A 4 604 11 HOH HOH . N 4 HOH A 5 605 7 HOH HOH . N 4 HOH A 6 606 25 HOH HOH . N 4 HOH A 7 607 17 HOH HOH . N 4 HOH A 8 608 39 HOH HOH . N 4 HOH A 9 609 37 HOH HOH . O 4 HOH B 1 501 10 HOH HOH . O 4 HOH B 2 502 44 HOH HOH . O 4 HOH B 3 503 9 HOH HOH . O 4 HOH B 4 504 14 HOH HOH . O 4 HOH B 5 505 45 HOH HOH . O 4 HOH B 6 506 41 HOH HOH . O 4 HOH B 7 507 38 HOH HOH . O 4 HOH B 8 508 22 HOH HOH . O 4 HOH B 9 509 42 HOH HOH . O 4 HOH B 10 510 43 HOH HOH . O 4 HOH B 11 511 30 HOH HOH . O 4 HOH B 12 512 23 HOH HOH . O 4 HOH B 13 513 21 HOH HOH . O 4 HOH B 14 514 20 HOH HOH . O 4 HOH B 15 515 46 HOH HOH . O 4 HOH B 16 516 31 HOH HOH . O 4 HOH B 17 517 19 HOH HOH . O 4 HOH B 18 518 12 HOH HOH . O 4 HOH B 19 519 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 2 24.922 1.609 19.337 1 38.86 ? C1 EDO 405 B 1 HETATM 2 O O1 EDO . . . J 2 25.733 0.493 19.525 1 35.11 ? O1 EDO 405 B 1 HETATM 3 C C2 EDO . . . J 2 23.53 1.326 19.001 1 42.63 ? C2 EDO 405 B 1 HETATM 4 O O2 EDO . . . J 2 23.021 2.246 18.043 1 39.9 ? O2 EDO 405 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #