data_6Y2F # _model_server_result.job_id tYh1mWExCntEy73ld96zfQ _model_server_result.datetime_utc '2025-02-28 09:37:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6Y2F # _exptl.entry_id 6Y2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.838 _cell.angle_gamma 90 _cell.entry_id 6Y2F _cell.length_a 98.085 _cell.length_b 80.926 _cell.length_c 51.659 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C57 _struct_conn.ptnr2_label_comp_id O6K _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id O6K _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.807 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6Y2F _atom_sites.fract_transf_matrix[1][1] 0.010195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 501 501 DMS DMS . C 3 O6K A 1 502 601 O6K 13b . D 4 HOH A 1 601 64 HOH HOH . D 4 HOH A 2 602 53 HOH HOH . D 4 HOH A 3 603 28 HOH HOH . D 4 HOH A 4 604 221 HOH HOH . D 4 HOH A 5 605 169 HOH HOH . D 4 HOH A 6 606 65 HOH HOH . D 4 HOH A 7 607 193 HOH HOH . D 4 HOH A 8 608 47 HOH HOH . D 4 HOH A 9 609 157 HOH HOH . D 4 HOH A 10 610 252 HOH HOH . D 4 HOH A 11 611 68 HOH HOH . D 4 HOH A 12 612 244 HOH HOH . D 4 HOH A 13 613 140 HOH HOH . D 4 HOH A 14 614 209 HOH HOH . D 4 HOH A 15 615 150 HOH HOH . D 4 HOH A 16 616 11 HOH HOH . D 4 HOH A 17 617 194 HOH HOH . D 4 HOH A 18 618 76 HOH HOH . D 4 HOH A 19 619 232 HOH HOH . D 4 HOH A 20 620 70 HOH HOH . D 4 HOH A 21 621 242 HOH HOH . D 4 HOH A 22 622 75 HOH HOH . D 4 HOH A 23 623 125 HOH HOH . D 4 HOH A 24 624 62 HOH HOH . D 4 HOH A 25 625 74 HOH HOH . D 4 HOH A 26 626 18 HOH HOH . D 4 HOH A 27 627 4 HOH HOH . D 4 HOH A 28 628 48 HOH HOH . D 4 HOH A 29 629 59 HOH HOH . D 4 HOH A 30 630 22 HOH HOH . D 4 HOH A 31 631 86 HOH HOH . D 4 HOH A 32 632 46 HOH HOH . D 4 HOH A 33 633 40 HOH HOH . D 4 HOH A 34 634 9 HOH HOH . D 4 HOH A 35 635 3 HOH HOH . D 4 HOH A 36 636 152 HOH HOH . D 4 HOH A 37 637 123 HOH HOH . D 4 HOH A 38 638 1 HOH HOH . D 4 HOH A 39 639 78 HOH HOH . D 4 HOH A 40 640 27 HOH HOH . D 4 HOH A 41 641 210 HOH HOH . D 4 HOH A 42 642 118 HOH HOH . D 4 HOH A 43 643 89 HOH HOH . D 4 HOH A 44 644 92 HOH HOH . D 4 HOH A 45 645 113 HOH HOH . D 4 HOH A 46 646 2 HOH HOH . D 4 HOH A 47 647 160 HOH HOH . D 4 HOH A 48 648 121 HOH HOH . D 4 HOH A 49 649 246 HOH HOH . D 4 HOH A 50 650 20 HOH HOH . D 4 HOH A 51 651 12 HOH HOH . D 4 HOH A 52 652 69 HOH HOH . D 4 HOH A 53 653 161 HOH HOH . D 4 HOH A 54 654 7 HOH HOH . D 4 HOH A 55 655 23 HOH HOH . D 4 HOH A 56 656 57 HOH HOH . D 4 HOH A 57 657 222 HOH HOH . D 4 HOH A 58 658 115 HOH HOH . D 4 HOH A 59 659 51 HOH HOH . D 4 HOH A 60 660 234 HOH HOH . D 4 HOH A 61 661 25 HOH HOH . D 4 HOH A 62 662 91 HOH HOH . D 4 HOH A 63 663 226 HOH HOH . D 4 HOH A 64 664 180 HOH HOH . D 4 HOH A 65 665 38 HOH HOH . D 4 HOH A 66 666 183 HOH HOH . D 4 HOH A 67 667 184 HOH HOH . D 4 HOH A 68 668 17 HOH HOH . D 4 HOH A 69 669 32 HOH HOH . D 4 HOH A 70 670 178 HOH HOH . D 4 HOH A 71 671 141 HOH HOH . D 4 HOH A 72 672 220 HOH HOH . D 4 HOH A 73 673 44 HOH HOH . D 4 HOH A 74 674 10 HOH HOH . D 4 HOH A 75 675 119 HOH HOH . D 4 HOH A 76 676 88 HOH HOH . D 4 HOH A 77 677 19 HOH HOH . D 4 HOH A 78 678 120 HOH HOH . D 4 HOH A 79 679 30 HOH HOH . D 4 HOH A 80 680 245 HOH HOH . D 4 HOH A 81 681 37 HOH HOH . D 4 HOH A 82 682 241 HOH HOH . D 4 HOH A 83 683 49 HOH HOH . D 4 HOH A 84 684 61 HOH HOH . D 4 HOH A 85 685 43 HOH HOH . D 4 HOH A 86 686 237 HOH HOH . D 4 HOH A 87 687 247 HOH HOH . D 4 HOH A 88 688 243 HOH HOH . D 4 HOH A 89 689 179 HOH HOH . D 4 HOH A 90 690 15 HOH HOH . D 4 HOH A 91 691 182 HOH HOH . D 4 HOH A 92 692 82 HOH HOH . D 4 HOH A 93 693 52 HOH HOH . D 4 HOH A 94 694 14 HOH HOH . D 4 HOH A 95 695 173 HOH HOH . D 4 HOH A 96 696 36 HOH HOH . D 4 HOH A 97 697 162 HOH HOH . D 4 HOH A 98 698 34 HOH HOH . D 4 HOH A 99 699 231 HOH HOH . D 4 HOH A 100 700 110 HOH HOH . D 4 HOH A 101 701 240 HOH HOH . D 4 HOH A 102 702 134 HOH HOH . D 4 HOH A 103 703 42 HOH HOH . D 4 HOH A 104 704 39 HOH HOH . D 4 HOH A 105 705 13 HOH HOH . D 4 HOH A 106 706 230 HOH HOH . D 4 HOH A 107 707 56 HOH HOH . D 4 HOH A 108 708 138 HOH HOH . D 4 HOH A 109 709 6 HOH HOH . D 4 HOH A 110 710 236 HOH HOH . D 4 HOH A 111 711 8 HOH HOH . D 4 HOH A 112 712 229 HOH HOH . D 4 HOH A 113 713 26 HOH HOH . D 4 HOH A 114 714 93 HOH HOH . D 4 HOH A 115 715 198 HOH HOH . D 4 HOH A 116 716 133 HOH HOH . D 4 HOH A 117 717 258 HOH HOH . D 4 HOH A 118 718 217 HOH HOH . D 4 HOH A 119 719 219 HOH HOH . D 4 HOH A 120 720 100 HOH HOH . D 4 HOH A 121 721 55 HOH HOH . D 4 HOH A 122 722 175 HOH HOH . D 4 HOH A 123 723 109 HOH HOH . D 4 HOH A 124 724 207 HOH HOH . D 4 HOH A 125 725 155 HOH HOH . D 4 HOH A 126 726 203 HOH HOH . D 4 HOH A 127 727 94 HOH HOH . D 4 HOH A 128 728 149 HOH HOH . D 4 HOH A 129 729 206 HOH HOH . D 4 HOH A 130 730 103 HOH HOH . D 4 HOH A 131 731 256 HOH HOH . D 4 HOH A 132 732 148 HOH HOH . D 4 HOH A 133 733 81 HOH HOH . D 4 HOH A 134 734 87 HOH HOH . D 4 HOH A 135 735 253 HOH HOH . D 4 HOH A 136 736 153 HOH HOH . D 4 HOH A 137 737 225 HOH HOH . D 4 HOH A 138 738 67 HOH HOH . D 4 HOH A 139 739 164 HOH HOH . D 4 HOH A 140 740 238 HOH HOH . D 4 HOH A 141 741 131 HOH HOH . D 4 HOH A 142 742 147 HOH HOH . D 4 HOH A 143 743 63 HOH HOH . D 4 HOH A 144 744 223 HOH HOH . D 4 HOH A 145 745 224 HOH HOH . D 4 HOH A 146 746 250 HOH HOH . D 4 HOH A 147 747 102 HOH HOH . D 4 HOH A 148 748 72 HOH HOH . D 4 HOH A 149 749 124 HOH HOH . D 4 HOH A 150 750 83 HOH HOH . D 4 HOH A 151 751 233 HOH HOH . D 4 HOH A 152 752 122 HOH HOH . D 4 HOH A 153 753 73 HOH HOH . D 4 HOH A 154 754 196 HOH HOH . D 4 HOH A 155 755 96 HOH HOH . D 4 HOH A 156 756 154 HOH HOH . D 4 HOH A 157 757 248 HOH HOH . D 4 HOH A 158 758 235 HOH HOH . D 4 HOH A 159 759 227 HOH HOH . D 4 HOH A 160 760 200 HOH HOH . D 4 HOH A 161 761 156 HOH HOH . D 4 HOH A 162 762 249 HOH HOH . D 4 HOH A 163 763 45 HOH HOH . D 4 HOH A 164 764 185 HOH HOH . D 4 HOH A 165 765 257 HOH HOH . D 4 HOH A 166 766 104 HOH HOH . D 4 HOH A 167 767 251 HOH HOH . D 4 HOH A 168 768 254 HOH HOH . D 4 HOH A 169 769 132 HOH HOH . D 4 HOH A 170 770 255 HOH HOH . D 4 HOH A 171 771 101 HOH HOH . D 4 HOH A 172 772 111 HOH HOH . D 4 HOH A 173 773 202 HOH HOH . D 4 HOH A 174 774 191 HOH HOH . D 4 HOH A 175 775 204 HOH HOH . D 4 HOH A 176 776 199 HOH HOH . D 4 HOH A 177 777 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 8.138 -4.542 25.822 1 81.63 ? S DMS 501 A 1 HETATM 2 O O DMS . . . B 2 7.442 -5.095 27.056 1 59.14 ? O DMS 501 A 1 HETATM 3 C C1 DMS . . . B 2 7.447 -5.431 24.451 1 75.06 ? C1 DMS 501 A 1 HETATM 4 C C2 DMS . . . B 2 7.441 -2.948 25.469 1 77.88 ? C2 DMS 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #