data_6Y2M # _model_server_result.job_id Jl9Uv3pr5WYh2KFY1VWXMQ _model_server_result.datetime_utc '2024-11-19 09:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6Y2M # _exptl.entry_id 6Y2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'biotC4-1 cofactor' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y2M _cell.length_a 57.146 _cell.length_b 57.146 _cell.length_c 182.564 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 121 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 121 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE1 _struct_conn.ptnr2_label_comp_id O6T _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id O6T _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 10_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.217 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H37 Fe N7 O6 S' _chem_comp.formula_weight 667.557 _chem_comp.id O6T _chem_comp.mon_nstd_flag . _chem_comp.name 'biotC4-1 cofactor' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C23 O6T sing 224 n n O4 C22 O6T doub 225 n n C20 C19 O6T sing 226 n n C22 C23 O6T sing 227 n n C22 N5 O6T sing 228 n n C23 C26 O6T sing 229 n n C23 C24 O6T sing 230 n n O5 C26 O6T doub 231 n n C19 N5 O6T sing 232 n n C19 C21 O6T sing 233 n n C19 C18 O6T sing 234 n n C26 N6 O6T sing 235 n n N5 FE1 O6T sing 236 n n C29 C27 O6T sing 237 n n O3 C18 O6T doub 238 n n C18 N4 O6T sing 239 n n N6 C27 O6T sing 240 n n N6 FE1 O6T sing 241 n n C27 C28 O6T sing 242 n n C27 C30 O6T sing 243 n n FE1 N4 O6T sing 244 n n FE1 N7 O6T sing 245 n n N4 C16 O6T sing 246 n n N7 C30 O6T sing 247 n n N7 C15 O6T sing 248 n n C30 O6 O6T doub 249 n n C16 C15 O6T doub 250 n y C16 C17 O6T sing 251 n y C15 C14 O6T sing 252 n y C17 C12 O6T doub 253 n y C14 C13 O6T doub 254 n y C12 C13 O6T sing 255 n y C12 C11 O6T sing 256 n n N3 C11 O6T sing 257 n n N3 C10 O6T sing 258 n n C11 O2 O6T doub 259 n n C10 C9 O6T sing 260 n n C9 C8 O6T sing 261 n n C8 C6 O6T sing 262 n n C6 C5 O6T sing 263 n n C5 C2 O6T sing 264 n n C5 S1 O6T sing 265 n n N1 C2 O6T sing 266 n n N1 C1 O6T sing 267 n n C2 C3 O6T sing 268 n n S1 C4 O6T sing 269 n n C1 O1 O6T doub 270 n n C1 N2 O6T sing 271 n n C3 C4 O6T sing 272 n n C3 N2 O6T sing 273 n n C13 H1 O6T sing 274 n n C20 H2 O6T sing 275 n n C20 H3 O6T sing 276 n n C20 H4 O6T sing 277 n n C21 H5 O6T sing 278 n n C21 H6 O6T sing 279 n n C21 H7 O6T sing 280 n n C24 H8 O6T sing 281 n n C24 H9 O6T sing 282 n n C24 H10 O6T sing 283 n n C14 H11 O6T sing 284 n n C25 H12 O6T sing 285 n n C25 H13 O6T sing 286 n n C25 H14 O6T sing 287 n n C17 H15 O6T sing 288 n n C29 H16 O6T sing 289 n n C29 H17 O6T sing 290 n n C29 H18 O6T sing 291 n n C28 H19 O6T sing 292 n n C28 H20 O6T sing 293 n n C28 H21 O6T sing 294 n n N3 H22 O6T sing 295 n n C10 H23 O6T sing 296 n n C10 H24 O6T sing 297 n n C9 H25 O6T sing 298 n n C9 H26 O6T sing 299 n n C8 H27 O6T sing 300 n n C8 H28 O6T sing 301 n n C6 H29 O6T sing 302 n n C6 H30 O6T sing 303 n n C5 H31 O6T sing 304 n n C2 H32 O6T sing 305 n n N1 H33 O6T sing 306 n n N2 H34 O6T sing 307 n n C3 H35 O6T sing 308 n n C4 H36 O6T sing 309 n n C4 H37 O6T sing 310 n n # _atom_sites.entry_id 6Y2M _atom_sites.fract_transf_matrix[1][1] 0.017499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O6T AAA 1 201 201 O6T JFT . C 3 HOH AAA 1 301 66 HOH HOH . C 3 HOH AAA 2 302 40 HOH HOH . C 3 HOH AAA 3 303 33 HOH HOH . C 3 HOH AAA 4 304 13 HOH HOH . C 3 HOH AAA 5 305 29 HOH HOH . C 3 HOH AAA 6 306 52 HOH HOH . C 3 HOH AAA 7 307 50 HOH HOH . C 3 HOH AAA 8 308 36 HOH HOH . C 3 HOH AAA 9 309 17 HOH HOH . C 3 HOH AAA 10 310 11 HOH HOH . C 3 HOH AAA 11 311 39 HOH HOH . C 3 HOH AAA 12 312 31 HOH HOH . C 3 HOH AAA 13 313 62 HOH HOH . C 3 HOH AAA 14 314 28 HOH HOH . C 3 HOH AAA 15 315 44 HOH HOH . C 3 HOH AAA 16 316 3 HOH HOH . C 3 HOH AAA 17 317 67 HOH HOH . C 3 HOH AAA 18 318 1 HOH HOH . C 3 HOH AAA 19 319 5 HOH HOH . C 3 HOH AAA 20 320 43 HOH HOH . C 3 HOH AAA 21 321 23 HOH HOH . C 3 HOH AAA 22 322 20 HOH HOH . C 3 HOH AAA 23 323 14 HOH HOH . C 3 HOH AAA 24 324 9 HOH HOH . C 3 HOH AAA 25 325 15 HOH HOH . C 3 HOH AAA 26 326 12 HOH HOH . C 3 HOH AAA 27 327 4 HOH HOH . C 3 HOH AAA 28 328 16 HOH HOH . C 3 HOH AAA 29 329 2 HOH HOH . C 3 HOH AAA 30 330 51 HOH HOH . C 3 HOH AAA 31 331 35 HOH HOH . C 3 HOH AAA 32 332 55 HOH HOH . C 3 HOH AAA 33 333 32 HOH HOH . C 3 HOH AAA 34 334 65 HOH HOH . C 3 HOH AAA 35 335 64 HOH HOH . C 3 HOH AAA 36 336 37 HOH HOH . C 3 HOH AAA 37 337 10 HOH HOH . C 3 HOH AAA 38 338 25 HOH HOH . C 3 HOH AAA 39 339 48 HOH HOH . C 3 HOH AAA 40 340 18 HOH HOH . C 3 HOH AAA 41 341 8 HOH HOH . C 3 HOH AAA 42 342 24 HOH HOH . C 3 HOH AAA 43 343 30 HOH HOH . C 3 HOH AAA 44 344 34 HOH HOH . C 3 HOH AAA 45 345 61 HOH HOH . C 3 HOH AAA 46 346 57 HOH HOH . C 3 HOH AAA 47 347 56 HOH HOH . C 3 HOH AAA 48 348 41 HOH HOH . C 3 HOH AAA 49 349 58 HOH HOH . C 3 HOH AAA 50 350 60 HOH HOH . C 3 HOH AAA 51 351 49 HOH HOH . C 3 HOH AAA 52 352 47 HOH HOH . C 3 HOH AAA 53 353 63 HOH HOH . C 3 HOH AAA 54 354 68 HOH HOH . C 3 HOH AAA 55 355 45 HOH HOH . C 3 HOH AAA 56 356 6 HOH HOH . C 3 HOH AAA 57 357 53 HOH HOH . C 3 HOH AAA 58 358 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 O6T . . . B 2 -5.576 -3.012 -14.565 1 42.8 ? C13 O6T 201 AAA 1 HETATM 2 C C15 O6T . . . B 2 -5.126 -1.115 -16.004 1 50.67 ? C15 O6T 201 AAA 1 HETATM 3 C C20 O6T . . . B 2 -7.58 0.238 -20.703 1 45.05 ? C20 O6T 201 AAA 1 HETATM 4 C C21 O6T . . . B 2 -8.765 1.901 -19.15 1 43.12 ? C21 O6T 201 AAA 1 HETATM 5 C C24 O6T . . . B 2 -4.687 4.476 -18.841 1 52.03 ? C24 O6T 201 AAA 1 HETATM 6 C C11 O6T . . . B 2 -7.854 -3.937 -14.328 1 36.48 ? C11 O6T 201 AAA 1 HETATM 7 C C12 O6T . . . B 2 -6.925 -2.961 -14.93 1 42.44 ? C12 O6T 201 AAA 1 HETATM 8 C C14 O6T . . . B 2 -4.674 -2.097 -15.09 1 46.52 ? C14 O6T 201 AAA 1 HETATM 9 C C18 O6T . . . B 2 -7.671 -0.027 -18.21 1 45.65 ? C18 O6T 201 AAA 1 HETATM 10 C C23 O6T . . . B 2 -4.545 3.326 -19.848 1 55.35 ? C23 O6T 201 AAA 1 HETATM 11 C C25 O6T . . . B 2 -4.144 3.918 -21.221 1 51.9 ? C25 O6T 201 AAA 1 HETATM 12 FE FE1 O6T . . . B 2 -5.315 1.228 -17.516 1 48.13 ? FE1 O6T 201 AAA 1 HETATM 13 O O3 O6T . . . B 2 -8.33 -1.014 -18.362 1 48.37 ? O3 O6T 201 AAA 1 HETATM 14 O O6 O6T . . . B 2 -2.366 -0.755 -15.938 1 53.01 ? O6 O6T 201 AAA 1 HETATM 15 N N7 O6T . . . B 2 -4.396 -0.13 -16.655 1 49 ? N7 O6T 201 AAA 1 HETATM 16 N N4 O6T . . . B 2 -6.711 0.009 -17.266 1 44.56 ? N4 O6T 201 AAA 1 HETATM 17 N N6 O6T . . . B 2 -3.589 1.718 -18.186 1 50.53 ? N6 O6T 201 AAA 1 HETATM 18 N N5 O6T . . . B 2 -6.219 1.672 -19.188 1 45.63 ? N5 O6T 201 AAA 1 HETATM 19 O O4 O6T . . . B 2 -6.605 2.95 -21.002 1 52.65 ? O4 O6T 201 AAA 1 HETATM 20 O O5 O6T . . . B 2 -2.264 2.942 -19.621 1 61.36 ? O5 O6T 201 AAA 1 HETATM 21 C C16 O6T . . . B 2 -6.496 -1.051 -16.365 1 44.61 ? C16 O6T 201 AAA 1 HETATM 22 C C27 O6T . . . B 2 -2.471 0.869 -17.723 1 53.52 ? C27 O6T 201 AAA 1 HETATM 23 C C30 O6T . . . B 2 -3.047 -0.014 -16.597 1 54.8 ? C30 O6T 201 AAA 1 HETATM 24 C C19 O6T . . . B 2 -7.523 1.014 -19.366 1 48.27 ? C19 O6T 201 AAA 1 HETATM 25 C C17 O6T . . . B 2 -7.39 -2 -15.836 1 41.83 ? C17 O6T 201 AAA 1 HETATM 26 C C22 O6T . . . B 2 -5.94 2.691 -19.988 1 53.83 ? C22 O6T 201 AAA 1 HETATM 27 C C29 O6T . . . B 2 -2.046 -0.088 -18.848 1 53.8 ? C29 O6T 201 AAA 1 HETATM 28 C C26 O6T . . . B 2 -3.379 2.493 -19.295 1 56.2 ? C26 O6T 201 AAA 1 HETATM 29 C C28 O6T . . . B 2 -1.264 1.605 -17.122 1 47.58 ? C28 O6T 201 AAA 1 HETATM 30 N N3 O6T . . . B 2 -9.268 -3.66 -14.505 1 34.31 ? N3 O6T 201 AAA 1 HETATM 31 C C10 O6T . . . B 2 -10.119 -4.547 -13.767 1 35.25 ? C10 O6T 201 AAA 1 HETATM 32 C C9 O6T . . . B 2 -11.023 -3.478 -13.182 1 35.28 ? C9 O6T 201 AAA 1 HETATM 33 C C8 O6T . . . B 2 -10.412 -2.897 -11.896 1 31.32 ? C8 O6T 201 AAA 1 HETATM 34 C C6 O6T . . . B 2 -11.221 -1.768 -11.316 1 29.05 ? C6 O6T 201 AAA 1 HETATM 35 C C5 O6T . . . B 2 -10.644 -1.065 -10.096 1 26.7 ? C5 O6T 201 AAA 1 HETATM 36 C C2 O6T . . . B 2 -11.205 0.342 -9.698 1 25.23 ? C2 O6T 201 AAA 1 HETATM 37 N N1 O6T . . . B 2 -12.645 0.337 -9.745 1 25 ? N1 O6T 201 AAA 1 HETATM 38 C C1 O6T . . . B 2 -13.199 0.565 -8.512 1 28.85 ? C1 O6T 201 AAA 1 HETATM 39 O O1 O6T . . . B 2 -14.434 0.622 -8.246 1 30.53 ? O1 O6T 201 AAA 1 HETATM 40 N N2 O6T . . . B 2 -12.253 0.715 -7.6 1 26.49 ? N2 O6T 201 AAA 1 HETATM 41 C C3 O6T . . . B 2 -10.935 0.572 -8.219 1 25.85 ? C3 O6T 201 AAA 1 HETATM 42 C C4 O6T . . . B 2 -10.289 -0.685 -7.645 1 23.89 ? C4 O6T 201 AAA 1 HETATM 43 S S1 O6T . . . B 2 -10.815 -2.075 -8.62 1 32.27 ? S1 O6T 201 AAA 1 HETATM 44 O O2 O6T . . . B 2 -7.399 -5.018 -13.921 1 42.09 ? O2 O6T 201 AAA 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #