data_6Y33
#
_model_server_result.job_id            p2yGH2H7azb5tBznoC-9kA 
_model_server_result.datetime_utc      '2024-12-23 02:56:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6Y33 
#
_exptl.entry_id    6Y33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              681.584 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'biotC5-1 cofactor' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y33 
_cell.length_a            57.633 
_cell.length_b            57.633 
_cell.length_c            183.649 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H39 Fe N7 O6 S' 
_chem_comp.formula_weight    681.584 
_chem_comp.id                O7Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'biotC5-1 cofactor' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C11 O7Q doub 237 n n 
C11 N3 O7Q sing 238 n n 
N3 C10 O7Q sing 239 n n 
C10 C9 O7Q sing 240 n n 
C9 C8 O7Q sing 241 n n 
C8 C7 O7Q sing 242 n n 
C7 C6 O7Q sing 243 n n 
C6 C5 O7Q sing 244 n n 
C5 C2 O7Q sing 245 n n 
C5 S1 O7Q sing 246 n n 
C2 N1 O7Q sing 247 n n 
C2 C3 O7Q sing 248 n n 
N1 C1 O7Q sing 249 n n 
S1 C4 O7Q sing 250 n n 
C1 O1 O7Q doub 251 n n 
C1 N2 O7Q sing 252 n n 
C3 N2 O7Q sing 253 n n 
C3 C4 O7Q sing 254 n n 
C4 H1 O7Q sing 255 n n 
C4 H2 O7Q sing 256 n n 
C5 H3 O7Q sing 257 n n 
C7 H4 O7Q sing 258 n n 
C7 H5 O7Q sing 259 n n 
C8 H6 O7Q sing 260 n n 
C8 H7 O7Q sing 261 n n 
C9 H8 O7Q sing 262 n n 
C9 H9 O7Q sing 263 n n 
C2 H10 O7Q sing 264 n n 
C3 H11 O7Q sing 265 n n 
N3 H12 O7Q sing 266 n n 
C10 H14 O7Q sing 267 n n 
C10 H15 O7Q sing 268 n n 
C6 H16 O7Q sing 269 n n 
C6 H17 O7Q sing 270 n n 
N1 H18 O7Q sing 271 n n 
N2 H19 O7Q sing 272 n n 
C11 C12 O7Q sing 273 n n 
C12 C13 O7Q sing 274 n y 
C12 C14 O7Q doub 275 n y 
C14 C15 O7Q sing 276 n y 
C13 C16 O7Q doub 277 n y 
C16 C17 O7Q sing 278 n y 
C17 C15 O7Q doub 279 n y 
C17 N4 O7Q sing 280 n n 
C15 N5 O7Q sing 281 n n 
N4 C20 O7Q sing 282 n n 
N5 C21 O7Q sing 283 n n 
N5 FE1 O7Q sing 284 n n 
FE1 N4 O7Q sing 285 n n 
C20 C23 O7Q sing 286 n n 
C20 O6 O7Q doub 287 n n 
C23 C25 O7Q sing 288 n n 
C23 C26 O7Q sing 289 n n 
C23 N7 O7Q sing 290 n n 
N7 FE1 O7Q sing 291 n n 
N7 C28 O7Q sing 292 n n 
C28 C29 O7Q sing 293 n n 
C28 O5 O7Q doub 294 n n 
C29 C31 O7Q sing 295 n n 
C29 C32 O7Q sing 296 n n 
C29 C33 O7Q sing 297 n n 
C33 O4 O7Q doub 298 n n 
C33 N6 O7Q sing 299 n n 
N6 FE1 O7Q sing 300 n n 
N6 C36 O7Q sing 301 n n 
C36 C37 O7Q sing 302 n n 
C36 C21 O7Q sing 303 n n 
C36 C38 O7Q sing 304 n n 
C21 O3 O7Q doub 305 n n 
C13 H13 O7Q sing 306 n n 
C14 H20 O7Q sing 307 n n 
C16 H21 O7Q sing 308 n n 
C25 H22 O7Q sing 309 n n 
C25 H23 O7Q sing 310 n n 
C25 H24 O7Q sing 311 n n 
C26 H25 O7Q sing 312 n n 
C26 H26 O7Q sing 313 n n 
C26 H27 O7Q sing 314 n n 
C31 H28 O7Q sing 315 n n 
C31 H29 O7Q sing 316 n n 
C31 H30 O7Q sing 317 n n 
C32 H31 O7Q sing 318 n n 
C32 H32 O7Q sing 319 n n 
C32 H33 O7Q sing 320 n n 
C37 H34 O7Q sing 321 n n 
C37 H35 O7Q sing 322 n n 
C37 H36 O7Q sing 323 n n 
C38 H37 O7Q sing 324 n n 
C38 H38 O7Q sing 325 n n 
C38 H39 O7Q sing 326 n n 
#
_atom_sites.entry_id                     6Y33 
_atom_sites.fract_transf_matrix[1][1]    0.017351 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005445 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O7Q AAA 1 201 201 O7Q JLT . 
C 3 GOL AAA 1 202 301 GOL GOL . 
D 4 HOH AAA 1 301 91 HOH HOH . 
D 4 HOH AAA 2 302 60 HOH HOH . 
D 4 HOH AAA 3 303 65 HOH HOH . 
D 4 HOH AAA 4 304 64 HOH HOH . 
D 4 HOH AAA 5 305 62 HOH HOH . 
D 4 HOH AAA 6 306 29 HOH HOH . 
D 4 HOH AAA 7 307 17 HOH HOH . 
D 4 HOH AAA 8 308 85 HOH HOH . 
D 4 HOH AAA 9 309 35 HOH HOH . 
D 4 HOH AAA 10 310 8 HOH HOH . 
D 4 HOH AAA 11 311 3 HOH HOH . 
D 4 HOH AAA 12 312 5 HOH HOH . 
D 4 HOH AAA 13 313 23 HOH HOH . 
D 4 HOH AAA 14 314 90 HOH HOH . 
D 4 HOH AAA 15 315 11 HOH HOH . 
D 4 HOH AAA 16 316 9 HOH HOH . 
D 4 HOH AAA 17 317 36 HOH HOH . 
D 4 HOH AAA 18 318 43 HOH HOH . 
D 4 HOH AAA 19 319 4 HOH HOH . 
D 4 HOH AAA 20 320 74 HOH HOH . 
D 4 HOH AAA 21 321 2 HOH HOH . 
D 4 HOH AAA 22 322 34 HOH HOH . 
D 4 HOH AAA 23 323 53 HOH HOH . 
D 4 HOH AAA 24 324 14 HOH HOH . 
D 4 HOH AAA 25 325 21 HOH HOH . 
D 4 HOH AAA 26 326 69 HOH HOH . 
D 4 HOH AAA 27 327 38 HOH HOH . 
D 4 HOH AAA 28 328 31 HOH HOH . 
D 4 HOH AAA 29 329 75 HOH HOH . 
D 4 HOH AAA 30 330 52 HOH HOH . 
D 4 HOH AAA 31 331 32 HOH HOH . 
D 4 HOH AAA 32 332 81 HOH HOH . 
D 4 HOH AAA 33 333 15 HOH HOH . 
D 4 HOH AAA 34 334 40 HOH HOH . 
D 4 HOH AAA 35 335 71 HOH HOH . 
D 4 HOH AAA 36 336 26 HOH HOH . 
D 4 HOH AAA 37 337 73 HOH HOH . 
D 4 HOH AAA 38 338 86 HOH HOH . 
D 4 HOH AAA 39 339 10 HOH HOH . 
D 4 HOH AAA 40 340 6 HOH HOH . 
D 4 HOH AAA 41 341 66 HOH HOH . 
D 4 HOH AAA 42 342 45 HOH HOH . 
D 4 HOH AAA 43 343 30 HOH HOH . 
D 4 HOH AAA 44 344 24 HOH HOH . 
D 4 HOH AAA 45 345 87 HOH HOH . 
D 4 HOH AAA 46 346 72 HOH HOH . 
D 4 HOH AAA 47 347 70 HOH HOH . 
D 4 HOH AAA 48 348 59 HOH HOH . 
D 4 HOH AAA 49 349 7 HOH HOH . 
D 4 HOH AAA 50 350 56 HOH HOH . 
D 4 HOH AAA 51 351 39 HOH HOH . 
D 4 HOH AAA 52 352 84 HOH HOH . 
D 4 HOH AAA 53 353 19 HOH HOH . 
D 4 HOH AAA 54 354 13 HOH HOH . 
D 4 HOH AAA 55 355 67 HOH HOH . 
D 4 HOH AAA 56 356 27 HOH HOH . 
D 4 HOH AAA 57 357 28 HOH HOH . 
D 4 HOH AAA 58 358 12 HOH HOH . 
D 4 HOH AAA 59 359 83 HOH HOH . 
D 4 HOH AAA 60 360 48 HOH HOH . 
D 4 HOH AAA 61 361 22 HOH HOH . 
D 4 HOH AAA 62 362 33 HOH HOH . 
D 4 HOH AAA 63 363 46 HOH HOH . 
D 4 HOH AAA 64 364 50 HOH HOH . 
D 4 HOH AAA 65 365 61 HOH HOH . 
D 4 HOH AAA 66 366 44 HOH HOH . 
D 4 HOH AAA 67 367 89 HOH HOH . 
D 4 HOH AAA 68 368 47 HOH HOH . 
D 4 HOH AAA 69 369 37 HOH HOH . 
D 4 HOH AAA 70 370 16 HOH HOH . 
D 4 HOH AAA 71 371 20 HOH HOH . 
D 4 HOH AAA 72 372 42 HOH HOH . 
D 4 HOH AAA 73 373 88 HOH HOH . 
D 4 HOH AAA 74 374 55 HOH HOH . 
D 4 HOH AAA 75 375 82 HOH HOH . 
D 4 HOH AAA 76 376 54 HOH HOH . 
D 4 HOH AAA 77 377 79 HOH HOH . 
D 4 HOH AAA 78 378 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 O7Q . . . B 2 -10.317 -0.697 -7.598 1 16.29 ? C4 O7Q 201 AAA 1 
HETATM 2 C C5 O7Q . . . B 2 -10.749 -1.02 -10.087 1 16.42 ? C5 O7Q 201 AAA 1 
HETATM 3 C C7 O7Q . . . B 2 -10.554 -2.799 -11.949 1 19.12 ? C7 O7Q 201 AAA 1 
HETATM 4 C C8 O7Q . . . B 2 -10.817 -3.118 -13.397 1 25.34 ? C8 O7Q 201 AAA 1 
HETATM 5 O O2 O7Q . . . B 2 -8.497 -1.948 -16.325 1 38.56 ? O2 O7Q 201 AAA 1 
HETATM 6 C C9 O7Q . . . B 2 -10.074 -4.456 -13.709 1 27.27 ? C9 O7Q 201 AAA 1 
HETATM 7 O O1 O7Q . . . B 2 -14.535 0.638 -8.247 1 16.24 ? O1 O7Q 201 AAA 1 
HETATM 8 C C1 O7Q . . . B 2 -13.315 0.563 -8.514 1 15.92 ? C1 O7Q 201 AAA 1 
HETATM 9 C C2 O7Q . . . B 2 -11.328 0.321 -9.669 1 15.68 ? C2 O7Q 201 AAA 1 
HETATM 10 C C3 O7Q . . . B 2 -11.021 0.579 -8.183 1 15.81 ? C3 O7Q 201 AAA 1 
HETATM 11 N N3 O7Q . . . B 2 -7.838 -3.608 -14.651 1 37.27 ? N3 O7Q 201 AAA 1 
HETATM 12 C C11 O7Q . . . B 2 -7.617 -2.71 -15.85 1 42.99 ? C11 O7Q 201 AAA 1 
HETATM 13 C C10 O7Q . . . B 2 -9.035 -4.313 -14.773 1 37.88 ? C10 O7Q 201 AAA 1 
HETATM 14 C C6 O7Q . . . B 2 -11.363 -1.622 -11.373 1 18.35 ? C6 O7Q 201 AAA 1 
HETATM 15 N N1 O7Q . . . B 2 -12.826 0.334 -9.704 1 15.98 ? N1 O7Q 201 AAA 1 
HETATM 16 N N2 O7Q . . . B 2 -12.333 0.7 -7.589 1 16.63 ? N2 O7Q 201 AAA 1 
HETATM 17 S S1 O7Q . . . B 2 -10.891 -2.061 -8.633 1 16.84 ? S1 O7Q 201 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           437 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#