data_6Y33
#
_model_server_result.job_id            l4MS0NA_yK94YJjQVe5JiQ 
_model_server_result.datetime_utc      '2024-12-23 02:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6Y33 
#
_exptl.entry_id    6Y33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y33 
_cell.length_a            57.633 
_cell.length_b            57.633 
_cell.length_c            183.649 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6Y33 
_atom_sites.fract_transf_matrix[1][1]    0.017351 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005445 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O7Q AAA 1 201 201 O7Q JLT . 
C 3 GOL AAA 1 202 301 GOL GOL . 
D 4 HOH AAA 1 301 91 HOH HOH . 
D 4 HOH AAA 2 302 60 HOH HOH . 
D 4 HOH AAA 3 303 65 HOH HOH . 
D 4 HOH AAA 4 304 64 HOH HOH . 
D 4 HOH AAA 5 305 62 HOH HOH . 
D 4 HOH AAA 6 306 29 HOH HOH . 
D 4 HOH AAA 7 307 17 HOH HOH . 
D 4 HOH AAA 8 308 85 HOH HOH . 
D 4 HOH AAA 9 309 35 HOH HOH . 
D 4 HOH AAA 10 310 8 HOH HOH . 
D 4 HOH AAA 11 311 3 HOH HOH . 
D 4 HOH AAA 12 312 5 HOH HOH . 
D 4 HOH AAA 13 313 23 HOH HOH . 
D 4 HOH AAA 14 314 90 HOH HOH . 
D 4 HOH AAA 15 315 11 HOH HOH . 
D 4 HOH AAA 16 316 9 HOH HOH . 
D 4 HOH AAA 17 317 36 HOH HOH . 
D 4 HOH AAA 18 318 43 HOH HOH . 
D 4 HOH AAA 19 319 4 HOH HOH . 
D 4 HOH AAA 20 320 74 HOH HOH . 
D 4 HOH AAA 21 321 2 HOH HOH . 
D 4 HOH AAA 22 322 34 HOH HOH . 
D 4 HOH AAA 23 323 53 HOH HOH . 
D 4 HOH AAA 24 324 14 HOH HOH . 
D 4 HOH AAA 25 325 21 HOH HOH . 
D 4 HOH AAA 26 326 69 HOH HOH . 
D 4 HOH AAA 27 327 38 HOH HOH . 
D 4 HOH AAA 28 328 31 HOH HOH . 
D 4 HOH AAA 29 329 75 HOH HOH . 
D 4 HOH AAA 30 330 52 HOH HOH . 
D 4 HOH AAA 31 331 32 HOH HOH . 
D 4 HOH AAA 32 332 81 HOH HOH . 
D 4 HOH AAA 33 333 15 HOH HOH . 
D 4 HOH AAA 34 334 40 HOH HOH . 
D 4 HOH AAA 35 335 71 HOH HOH . 
D 4 HOH AAA 36 336 26 HOH HOH . 
D 4 HOH AAA 37 337 73 HOH HOH . 
D 4 HOH AAA 38 338 86 HOH HOH . 
D 4 HOH AAA 39 339 10 HOH HOH . 
D 4 HOH AAA 40 340 6 HOH HOH . 
D 4 HOH AAA 41 341 66 HOH HOH . 
D 4 HOH AAA 42 342 45 HOH HOH . 
D 4 HOH AAA 43 343 30 HOH HOH . 
D 4 HOH AAA 44 344 24 HOH HOH . 
D 4 HOH AAA 45 345 87 HOH HOH . 
D 4 HOH AAA 46 346 72 HOH HOH . 
D 4 HOH AAA 47 347 70 HOH HOH . 
D 4 HOH AAA 48 348 59 HOH HOH . 
D 4 HOH AAA 49 349 7 HOH HOH . 
D 4 HOH AAA 50 350 56 HOH HOH . 
D 4 HOH AAA 51 351 39 HOH HOH . 
D 4 HOH AAA 52 352 84 HOH HOH . 
D 4 HOH AAA 53 353 19 HOH HOH . 
D 4 HOH AAA 54 354 13 HOH HOH . 
D 4 HOH AAA 55 355 67 HOH HOH . 
D 4 HOH AAA 56 356 27 HOH HOH . 
D 4 HOH AAA 57 357 28 HOH HOH . 
D 4 HOH AAA 58 358 12 HOH HOH . 
D 4 HOH AAA 59 359 83 HOH HOH . 
D 4 HOH AAA 60 360 48 HOH HOH . 
D 4 HOH AAA 61 361 22 HOH HOH . 
D 4 HOH AAA 62 362 33 HOH HOH . 
D 4 HOH AAA 63 363 46 HOH HOH . 
D 4 HOH AAA 64 364 50 HOH HOH . 
D 4 HOH AAA 65 365 61 HOH HOH . 
D 4 HOH AAA 66 366 44 HOH HOH . 
D 4 HOH AAA 67 367 89 HOH HOH . 
D 4 HOH AAA 68 368 47 HOH HOH . 
D 4 HOH AAA 69 369 37 HOH HOH . 
D 4 HOH AAA 70 370 16 HOH HOH . 
D 4 HOH AAA 71 371 20 HOH HOH . 
D 4 HOH AAA 72 372 42 HOH HOH . 
D 4 HOH AAA 73 373 88 HOH HOH . 
D 4 HOH AAA 74 374 55 HOH HOH . 
D 4 HOH AAA 75 375 82 HOH HOH . 
D 4 HOH AAA 76 376 54 HOH HOH . 
D 4 HOH AAA 77 377 79 HOH HOH . 
D 4 HOH AAA 78 378 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -8.703 5.942 -5.952 1 34.67 ? C1 GOL 202 AAA 1 
HETATM 2 O O1 GOL . . . C 3 -7.506 5.436 -5.391 1 22.97 ? O1 GOL 202 AAA 1 
HETATM 3 C C2 GOL . . . C 3 -8.823 7.407 -5.585 1 39.77 ? C2 GOL 202 AAA 1 
HETATM 4 O O2 GOL . . . C 3 -7.826 8.129 -6.313 1 50.89 ? O2 GOL 202 AAA 1 
HETATM 5 C C3 GOL . . . C 3 -10.182 7.914 -5.956 1 45.94 ? C3 GOL 202 AAA 1 
HETATM 6 O O3 GOL . . . C 3 -10.598 7.136 -7.066 1 33.95 ? O3 GOL 202 AAA 1 
HETATM 7 H H11 GOL . . . C 3 -9.472 5.436 -5.588 1 34.67 ? H11 GOL 202 AAA 1 
HETATM 8 H H12 GOL . . . C 3 -8.67 5.839 -6.936 1 34.67 ? H12 GOL 202 AAA 1 
HETATM 9 H HO1 GOL . . . C 3 -7.441 4.618 -5.597 0 22.97 ? HO1 GOL 202 AAA 1 
HETATM 10 H H2 GOL . . . C 3 -8.686 7.497 -4.609 1 39.77 ? H2 GOL 202 AAA 1 
HETATM 11 H HO2 GOL . . . C 3 -8.221 8.696 -6.805 0 50.89 ? HO2 GOL 202 AAA 1 
HETATM 12 H H31 GOL . . . C 3 -10.12 8.873 -6.192 1 45.94 ? H31 GOL 202 AAA 1 
HETATM 13 H H32 GOL . . . C 3 -10.795 7.8 -5.187 1 45.94 ? H32 GOL 202 AAA 1 
HETATM 14 H HO3 GOL . . . C 3 -9.985 6.582 -7.246 1 33.95 ? HO3 GOL 202 AAA 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#