data_6Y34 # _model_server_result.job_id nmE9UV8l6EpU5v12Km3xWw _model_server_result.datetime_utc '2024-10-19 11:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6Y34 # _exptl.entry_id 6Y34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y34 _cell.length_a 57.941 _cell.length_b 57.941 _cell.length_c 183.822 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6Y34 _atom_sites.fract_transf_matrix[1][1] 0.017259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O7Q AAA 1 201 201 O7Q JLT . C 3 GOL AAA 1 202 301 GOL GOL . D 4 HOH AAA 1 301 63 HOH HOH . D 4 HOH AAA 2 302 56 HOH HOH . D 4 HOH AAA 3 303 83 HOH HOH . D 4 HOH AAA 4 304 29 HOH HOH . D 4 HOH AAA 5 305 161 HOH HOH . D 4 HOH AAA 6 306 163 HOH HOH . D 4 HOH AAA 7 307 12 HOH HOH . D 4 HOH AAA 8 308 70 HOH HOH . D 4 HOH AAA 9 309 2 HOH HOH . D 4 HOH AAA 10 310 4 HOH HOH . D 4 HOH AAA 11 311 36 HOH HOH . D 4 HOH AAA 12 312 33 HOH HOH . D 4 HOH AAA 13 313 128 HOH HOH . D 4 HOH AAA 14 314 34 HOH HOH . D 4 HOH AAA 15 315 133 HOH HOH . D 4 HOH AAA 16 316 46 HOH HOH . D 4 HOH AAA 17 317 75 HOH HOH . D 4 HOH AAA 18 318 6 HOH HOH . D 4 HOH AAA 19 319 10 HOH HOH . D 4 HOH AAA 20 320 3 HOH HOH . D 4 HOH AAA 21 321 127 HOH HOH . D 4 HOH AAA 22 322 88 HOH HOH . D 4 HOH AAA 23 323 160 HOH HOH . D 4 HOH AAA 24 324 8 HOH HOH . D 4 HOH AAA 25 325 131 HOH HOH . D 4 HOH AAA 26 326 95 HOH HOH . D 4 HOH AAA 27 327 54 HOH HOH . D 4 HOH AAA 28 328 7 HOH HOH . D 4 HOH AAA 29 329 68 HOH HOH . D 4 HOH AAA 30 330 62 HOH HOH . D 4 HOH AAA 31 331 30 HOH HOH . D 4 HOH AAA 32 332 11 HOH HOH . D 4 HOH AAA 33 333 65 HOH HOH . D 4 HOH AAA 34 334 153 HOH HOH . D 4 HOH AAA 35 335 38 HOH HOH . D 4 HOH AAA 36 336 23 HOH HOH . D 4 HOH AAA 37 337 9 HOH HOH . D 4 HOH AAA 38 338 164 HOH HOH . D 4 HOH AAA 39 339 162 HOH HOH . D 4 HOH AAA 40 340 138 HOH HOH . D 4 HOH AAA 41 341 77 HOH HOH . D 4 HOH AAA 42 342 28 HOH HOH . D 4 HOH AAA 43 343 120 HOH HOH . D 4 HOH AAA 44 344 40 HOH HOH . D 4 HOH AAA 45 345 126 HOH HOH . D 4 HOH AAA 46 346 159 HOH HOH . D 4 HOH AAA 47 347 115 HOH HOH . D 4 HOH AAA 48 348 17 HOH HOH . D 4 HOH AAA 49 349 16 HOH HOH . D 4 HOH AAA 50 350 116 HOH HOH . D 4 HOH AAA 51 351 134 HOH HOH . D 4 HOH AAA 52 352 5 HOH HOH . D 4 HOH AAA 53 353 13 HOH HOH . D 4 HOH AAA 54 354 60 HOH HOH . D 4 HOH AAA 55 355 1 HOH HOH . D 4 HOH AAA 56 356 19 HOH HOH . D 4 HOH AAA 57 357 44 HOH HOH . D 4 HOH AAA 58 358 94 HOH HOH . D 4 HOH AAA 59 359 21 HOH HOH . D 4 HOH AAA 60 360 53 HOH HOH . D 4 HOH AAA 61 361 37 HOH HOH . D 4 HOH AAA 62 362 76 HOH HOH . D 4 HOH AAA 63 363 47 HOH HOH . D 4 HOH AAA 64 364 78 HOH HOH . D 4 HOH AAA 65 365 52 HOH HOH . D 4 HOH AAA 66 366 22 HOH HOH . D 4 HOH AAA 67 367 24 HOH HOH . D 4 HOH AAA 68 368 129 HOH HOH . D 4 HOH AAA 69 369 14 HOH HOH . D 4 HOH AAA 70 370 26 HOH HOH . D 4 HOH AAA 71 371 27 HOH HOH . D 4 HOH AAA 72 372 98 HOH HOH . D 4 HOH AAA 73 373 93 HOH HOH . D 4 HOH AAA 74 374 146 HOH HOH . D 4 HOH AAA 75 375 32 HOH HOH . D 4 HOH AAA 76 376 151 HOH HOH . D 4 HOH AAA 77 377 124 HOH HOH . D 4 HOH AAA 78 378 74 HOH HOH . D 4 HOH AAA 79 379 80 HOH HOH . D 4 HOH AAA 80 380 20 HOH HOH . D 4 HOH AAA 81 381 69 HOH HOH . D 4 HOH AAA 82 382 106 HOH HOH . D 4 HOH AAA 83 383 92 HOH HOH . D 4 HOH AAA 84 384 66 HOH HOH . D 4 HOH AAA 85 385 81 HOH HOH . D 4 HOH AAA 86 386 90 HOH HOH . D 4 HOH AAA 87 387 55 HOH HOH . D 4 HOH AAA 88 388 102 HOH HOH . D 4 HOH AAA 89 389 125 HOH HOH . D 4 HOH AAA 90 390 96 HOH HOH . D 4 HOH AAA 91 391 25 HOH HOH . D 4 HOH AAA 92 392 51 HOH HOH . D 4 HOH AAA 93 393 57 HOH HOH . D 4 HOH AAA 94 394 136 HOH HOH . D 4 HOH AAA 95 395 73 HOH HOH . D 4 HOH AAA 96 396 147 HOH HOH . D 4 HOH AAA 97 397 31 HOH HOH . D 4 HOH AAA 98 398 143 HOH HOH . D 4 HOH AAA 99 399 50 HOH HOH . D 4 HOH AAA 100 400 107 HOH HOH . D 4 HOH AAA 101 401 141 HOH HOH . D 4 HOH AAA 102 402 100 HOH HOH . D 4 HOH AAA 103 403 79 HOH HOH . D 4 HOH AAA 104 404 45 HOH HOH . D 4 HOH AAA 105 405 112 HOH HOH . D 4 HOH AAA 106 406 152 HOH HOH . D 4 HOH AAA 107 407 150 HOH HOH . D 4 HOH AAA 108 408 86 HOH HOH . D 4 HOH AAA 109 409 132 HOH HOH . D 4 HOH AAA 110 410 145 HOH HOH . D 4 HOH AAA 111 411 155 HOH HOH . D 4 HOH AAA 112 412 99 HOH HOH . D 4 HOH AAA 113 413 111 HOH HOH . D 4 HOH AAA 114 414 140 HOH HOH . D 4 HOH AAA 115 415 149 HOH HOH . D 4 HOH AAA 116 416 41 HOH HOH . D 4 HOH AAA 117 417 144 HOH HOH . D 4 HOH AAA 118 418 158 HOH HOH . D 4 HOH AAA 119 419 135 HOH HOH . D 4 HOH AAA 120 420 108 HOH HOH . D 4 HOH AAA 121 421 67 HOH HOH . D 4 HOH AAA 122 422 114 HOH HOH . D 4 HOH AAA 123 423 154 HOH HOH . D 4 HOH AAA 124 424 148 HOH HOH . D 4 HOH AAA 125 425 130 HOH HOH . D 4 HOH AAA 126 426 113 HOH HOH . D 4 HOH AAA 127 427 49 HOH HOH . D 4 HOH AAA 128 428 48 HOH HOH . D 4 HOH AAA 129 429 87 HOH HOH . D 4 HOH AAA 130 430 118 HOH HOH . D 4 HOH AAA 131 431 156 HOH HOH . D 4 HOH AAA 132 432 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -13.494 -0.395 -23.685 0.5 30.77 ? C1 GOL 202 AAA 1 HETATM 2 O O1 GOL . . . C 3 -12.393 -1.135 -23.169 0.5 32.42 ? O1 GOL 202 AAA 1 HETATM 3 C C2 GOL . . . C 3 -14.664 -0.455 -22.738 0.5 30.38 ? C2 GOL 202 AAA 1 HETATM 4 O O2 GOL . . . C 3 -14.207 -0.939 -21.479 0.5 32.94 ? O2 GOL 202 AAA 1 HETATM 5 C C3 GOL . . . C 3 -15.343 0.881 -22.567 0.5 35.93 ? C3 GOL 202 AAA 1 HETATM 6 O O3 GOL . . . C 3 -14.918 1.79 -23.579 0.5 38.13 ? O3 GOL 202 AAA 1 HETATM 7 H H11 GOL . . . C 3 -13.764 -0.779 -24.557 0.5 30.77 ? H11 GOL 202 AAA 1 HETATM 8 H H12 GOL . . . C 3 -13.224 0.55 -23.805 0.5 30.77 ? H12 GOL 202 AAA 1 HETATM 9 H HO1 GOL . . . C 3 -11.755 -1.082 -23.722 0 32.42 ? HO1 GOL 202 AAA 1 HETATM 10 H H2 GOL . . . C 3 -15.325 -1.098 -23.098 0.5 30.38 ? H2 GOL 202 AAA 1 HETATM 11 H HO2 GOL . . . C 3 -14.415 -0.367 -20.888 0 32.94 ? HO2 GOL 202 AAA 1 HETATM 12 H H31 GOL . . . C 3 -15.112 1.254 -21.68 0.5 35.93 ? H31 GOL 202 AAA 1 HETATM 13 H H32 GOL . . . C 3 -16.323 0.76 -22.632 0.5 35.93 ? H32 GOL 202 AAA 1 HETATM 14 H HO3 GOL . . . C 3 -14.363 1.391 -24.078 0.5 38.13 ? HO3 GOL 202 AAA 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #