data_6Y3B # _model_server_result.job_id tuqDMNeFvpD7yzP5PytGEQ _model_server_result.datetime_utc '2024-11-08 20:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6Y3B # _exptl.entry_id 6Y3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y3B _cell.length_a 48.626 _cell.length_b 60.493 _cell.length_c 83.139 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6Y3B _atom_sites.fract_transf_matrix[1][1] 0.020565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL B 1 201 1 GOL GOL . D 4 O7N B 1 202 1 O7N XXX . E 5 SO4 B 1 203 1 SO4 SO4 . F 6 HOH A 1 101 182 HOH HOH . F 6 HOH A 2 102 112 HOH HOH . F 6 HOH A 3 103 141 HOH HOH . F 6 HOH A 4 104 78 HOH HOH . F 6 HOH A 5 105 97 HOH HOH . F 6 HOH A 6 106 77 HOH HOH . F 6 HOH A 7 107 84 HOH HOH . F 6 HOH A 8 108 15 HOH HOH . F 6 HOH A 9 109 127 HOH HOH . F 6 HOH A 10 110 29 HOH HOH . F 6 HOH A 11 111 82 HOH HOH . F 6 HOH A 12 112 133 HOH HOH . F 6 HOH A 13 113 10 HOH HOH . F 6 HOH A 14 114 192 HOH HOH . F 6 HOH A 15 115 163 HOH HOH . F 6 HOH A 16 116 28 HOH HOH . F 6 HOH A 17 117 18 HOH HOH . F 6 HOH A 18 118 19 HOH HOH . F 6 HOH A 19 119 186 HOH HOH . F 6 HOH A 20 120 59 HOH HOH . F 6 HOH A 21 121 193 HOH HOH . F 6 HOH A 22 122 94 HOH HOH . F 6 HOH A 23 123 136 HOH HOH . F 6 HOH A 24 124 45 HOH HOH . F 6 HOH A 25 125 91 HOH HOH . F 6 HOH A 26 126 178 HOH HOH . F 6 HOH A 27 127 155 HOH HOH . F 6 HOH A 28 128 171 HOH HOH . G 6 HOH B 1 301 108 HOH HOH . G 6 HOH B 2 302 144 HOH HOH . G 6 HOH B 3 303 115 HOH HOH . G 6 HOH B 4 304 38 HOH HOH . G 6 HOH B 5 305 67 HOH HOH . G 6 HOH B 6 306 113 HOH HOH . G 6 HOH B 7 307 31 HOH HOH . G 6 HOH B 8 308 74 HOH HOH . G 6 HOH B 9 309 85 HOH HOH . G 6 HOH B 10 310 64 HOH HOH . G 6 HOH B 11 311 69 HOH HOH . G 6 HOH B 12 312 30 HOH HOH . G 6 HOH B 13 313 89 HOH HOH . G 6 HOH B 14 314 90 HOH HOH . G 6 HOH B 15 315 151 HOH HOH . G 6 HOH B 16 316 25 HOH HOH . G 6 HOH B 17 317 167 HOH HOH . G 6 HOH B 18 318 150 HOH HOH . G 6 HOH B 19 319 11 HOH HOH . G 6 HOH B 20 320 116 HOH HOH . G 6 HOH B 21 321 130 HOH HOH . G 6 HOH B 22 322 107 HOH HOH . G 6 HOH B 23 323 22 HOH HOH . G 6 HOH B 24 324 76 HOH HOH . G 6 HOH B 25 325 9 HOH HOH . G 6 HOH B 26 326 50 HOH HOH . G 6 HOH B 27 327 7 HOH HOH . G 6 HOH B 28 328 96 HOH HOH . G 6 HOH B 29 329 174 HOH HOH . G 6 HOH B 30 330 104 HOH HOH . G 6 HOH B 31 331 2 HOH HOH . G 6 HOH B 32 332 106 HOH HOH . G 6 HOH B 33 333 48 HOH HOH . G 6 HOH B 34 334 26 HOH HOH . G 6 HOH B 35 335 12 HOH HOH . G 6 HOH B 36 336 194 HOH HOH . G 6 HOH B 37 337 40 HOH HOH . G 6 HOH B 38 338 81 HOH HOH . G 6 HOH B 39 339 66 HOH HOH . G 6 HOH B 40 340 54 HOH HOH . G 6 HOH B 41 341 52 HOH HOH . G 6 HOH B 42 342 177 HOH HOH . G 6 HOH B 43 343 143 HOH HOH . G 6 HOH B 44 344 181 HOH HOH . G 6 HOH B 45 345 6 HOH HOH . G 6 HOH B 46 346 41 HOH HOH . G 6 HOH B 47 347 121 HOH HOH . G 6 HOH B 48 348 36 HOH HOH . G 6 HOH B 49 349 14 HOH HOH . G 6 HOH B 50 350 21 HOH HOH . G 6 HOH B 51 351 148 HOH HOH . G 6 HOH B 52 352 170 HOH HOH . G 6 HOH B 53 353 34 HOH HOH . G 6 HOH B 54 354 110 HOH HOH . G 6 HOH B 55 355 17 HOH HOH . G 6 HOH B 56 356 131 HOH HOH . G 6 HOH B 57 357 111 HOH HOH . G 6 HOH B 58 358 27 HOH HOH . G 6 HOH B 59 359 183 HOH HOH . G 6 HOH B 60 360 189 HOH HOH . G 6 HOH B 61 361 160 HOH HOH . G 6 HOH B 62 362 98 HOH HOH . G 6 HOH B 63 363 24 HOH HOH . G 6 HOH B 64 364 187 HOH HOH . G 6 HOH B 65 365 46 HOH HOH . G 6 HOH B 66 366 190 HOH HOH . G 6 HOH B 67 367 55 HOH HOH . G 6 HOH B 68 368 20 HOH HOH . G 6 HOH B 69 369 16 HOH HOH . G 6 HOH B 70 370 117 HOH HOH . G 6 HOH B 71 371 152 HOH HOH . G 6 HOH B 72 372 32 HOH HOH . G 6 HOH B 73 373 125 HOH HOH . G 6 HOH B 74 374 147 HOH HOH . G 6 HOH B 75 375 201 HOH HOH . G 6 HOH B 76 376 200 HOH HOH . G 6 HOH B 77 377 149 HOH HOH . G 6 HOH B 78 378 83 HOH HOH . G 6 HOH B 79 379 126 HOH HOH . G 6 HOH B 80 380 191 HOH HOH . G 6 HOH B 81 381 157 HOH HOH . G 6 HOH B 82 382 161 HOH HOH . G 6 HOH B 83 383 198 HOH HOH . G 6 HOH B 84 384 158 HOH HOH . G 6 HOH B 85 385 123 HOH HOH . G 6 HOH B 86 386 75 HOH HOH . G 6 HOH B 87 387 145 HOH HOH . G 6 HOH B 88 388 173 HOH HOH . G 6 HOH B 89 389 164 HOH HOH . G 6 HOH B 90 390 176 HOH HOH . G 6 HOH B 91 391 122 HOH HOH . G 6 HOH B 92 392 51 HOH HOH . G 6 HOH B 93 393 195 HOH HOH . G 6 HOH B 94 394 87 HOH HOH . G 6 HOH B 95 395 105 HOH HOH . G 6 HOH B 96 396 140 HOH HOH . G 6 HOH B 97 397 180 HOH HOH . G 6 HOH B 98 398 188 HOH HOH . G 6 HOH B 99 399 60 HOH HOH . G 6 HOH B 100 400 68 HOH HOH . G 6 HOH B 101 401 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -8.797 -6.618 16.092 0.81 41.23 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . C 3 -8.296 -5.455 15.459 0.81 24.1 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . C 3 -9.338 -7.545 14.988 0.81 42.84 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . C 3 -8.681 -7.356 13.814 0.81 39.38 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . C 3 -9.074 -8.957 15.491 0.81 43.02 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . C 3 -10.052 -9.249 16.373 0.81 22.81 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #