data_6Y3C
#
_model_server_result.job_id            FeWn8SM8RFEQafCY-ExvNg 
_model_server_result.datetime_utc      '2024-11-19 09:27:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":710}' 
#
_entry.id    6Y3C 
#
_exptl.entry_id    6Y3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6Y3C 
_cell.length_a            182.11 
_cell.length_b            182.11 
_cell.length_c            103.24 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -34.413333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 
4 ? 2 5 3 BMA BMA C1 O1 . O6 HO6 . sing 
5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 600 NAG 
2 n B NAG 2 B 2 NAG A 601 NAG 
2 n B BMA 3 B 3 BMA A 604 BMA 
2 n B BMA 4 B 4 BMA A 602 BMA 
2 n B BMA 5 B 5 BMA A 603 BMA 
3 n C NAG 1 C 1 NAG A 900 NAG 
3 n C NAG 2 C 2 NAG A 901 NAG 
3 n D NAG 1 D 1 NAG A 1000 NAG 
3 n D NAG 2 D 2 NAG A 1001 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 36 1_555 A SG CYS 23 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 13 A CYS 37 1_555 A SG CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 17 A CYS 41 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 35 A CYS 59 1_555 A SG CYS 45 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 545 A CYS 569 1_555 A SG CYS 551 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 44 A ASN 68 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 120 A ASN 144 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 386 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 BMA . B BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 107 n n 
CAC OA1 FLC doub 108 n n 
CAC OA2 FLC sing 109 n n 
CA CB FLC sing 110 n n 
CA HA1 FLC sing 111 n n 
CA HA2 FLC sing 112 n n 
CB CBC FLC sing 113 n n 
CB CG FLC sing 114 n n 
CB OHB FLC sing 115 n n 
CBC OB1 FLC doub 116 n n 
CBC OB2 FLC sing 117 n n 
CG CGC FLC sing 118 n n 
CG HG1 FLC sing 119 n n 
CG HG2 FLC sing 120 n n 
CGC OG1 FLC doub 121 n n 
CGC OG2 FLC sing 122 n n 
OHB HOB FLC sing 123 n n 
#
_atom_sites.entry_id                     6Y3C 
_atom_sites.fract_transf_matrix[1][1]    0.005491 
_atom_sites.fract_transf_matrix[1][2]    0.00317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006341 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 FLC A 1 710 1801 FLC FLC . 
F 4 FLC A 1 711 1901 FLC FLC . 
G 4 FLC A 1 712 2001 FLC FLC . 
H 5 HOH A 1 801 3 HOH HOH . 
H 5 HOH A 2 802 2011 HOH HOH . 
H 5 HOH A 3 803 7 HOH HOH . 
H 5 HOH A 4 804 2 HOH HOH . 
H 5 HOH A 5 805 5 HOH HOH . 
H 5 HOH A 6 806 12 HOH HOH . 
H 5 HOH A 7 807 4 HOH HOH . 
H 5 HOH A 8 808 2021 HOH HOH . 
H 5 HOH A 9 809 1 HOH HOH . 
H 5 HOH A 10 810 10 HOH HOH . 
H 5 HOH A 11 811 6 HOH HOH . 
H 5 HOH A 12 812 8 HOH HOH . 
H 5 HOH A 13 813 13 HOH HOH . 
H 5 HOH A 14 814 9 HOH HOH . 
H 5 HOH A 15 815 11 HOH HOH . 
H 5 HOH A 16 816 2017 HOH HOH . 
H 5 HOH A 17 817 2018 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . E 4 -19.983 -41.376 4.331 0.94 114.65 ? CAC FLC 710 A 1 
HETATM 2 C CA FLC . . . E 4 -21.403 -41.604 3.816 0.94 124.35 ? CA FLC 710 A 1 
HETATM 3 C CB FLC . . . E 4 -22.074 -40.326 3.314 0.94 126.56 ? CB FLC 710 A 1 
HETATM 4 C CBC FLC . . . E 4 -22.805 -39.645 4.469 0.94 113.1 ? CBC FLC 710 A 1 
HETATM 5 C CG FLC . . . E 4 -23.095 -40.651 2.223 0.94 125.76 ? CG FLC 710 A 1 
HETATM 6 C CGC FLC . . . E 4 -23.068 -42.105 1.75 0.94 125.63 ? CGC FLC 710 A 1 
HETATM 7 O OA1 FLC . . . E 4 -19.256 -40.49 3.81 0.94 111.45 ? OA1 FLC 710 A 1 
HETATM 8 O OA2 FLC . . . E 4 -19.539 -42.08 5.276 0.94 109 ? OA2 FLC 710 A 1 
HETATM 9 O OB1 FLC . . . E 4 -23.961 -39.178 4.288 0.94 97.69 ? OB1 FLC 710 A 1 
HETATM 10 O OB2 FLC . . . E 4 -22.255 -39.547 5.598 0.94 107.34 ? OB2 FLC 710 A 1 
HETATM 11 O OG1 FLC . . . E 4 -22.266 -42.46 0.846 0.94 126.88 ? OG1 FLC 710 A 1 
HETATM 12 O OG2 FLC . . . E 4 -23.855 -42.947 2.258 0.94 124.57 ? OG2 FLC 710 A 1 
HETATM 13 O OHB FLC . . . E 4 -21.104 -39.456 2.802 0.94 126.14 ? OHB FLC 710 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#