data_6Y3E # _model_server_result.job_id DxqyqjQdN7BK43yICCAKSw _model_server_result.datetime_utc '2024-12-23 13:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6Y3E # _exptl.entry_id 6Y3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y3E _cell.length_a 57.45 _cell.length_b 57.45 _cell.length_c 114.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 81 A SER 81 1_555 L NA NA . A NA 211 5_454 ? A ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc2 J NA NA . A NA 209 1_555 M O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc3 L NA NA . A NA 211 1_555 M O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc4 L NA NA . A NA 211 1_555 M O HOH . A HOH 359 5_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc5 L NA NA . A NA 211 1_555 M O HOH . A HOH 414 5_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 6Y3E _atom_sites.fract_transf_matrix[1][1] 0.017406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 2 EDO EDO . C 2 EDO A 1 202 3 EDO EDO . D 2 EDO A 1 203 4 EDO EDO . E 2 EDO A 1 204 6 EDO EDO . F 2 EDO A 1 205 7 EDO EDO . G 3 12P A 1 206 1 12P 12P . H 3 12P A 1 207 2 12P 12P . I 4 PO4 A 1 208 1 PO4 PO4 . J 5 NA A 1 209 2 NA NA . K 5 NA A 1 210 3 NA NA . L 5 NA A 1 211 4 NA NA . M 6 HOH A 1 301 187 HOH HOH . M 6 HOH A 2 302 189 HOH HOH . M 6 HOH A 3 303 59 HOH HOH . M 6 HOH A 4 304 10 HOH HOH . M 6 HOH A 5 305 137 HOH HOH . M 6 HOH A 6 306 86 HOH HOH . M 6 HOH A 7 307 123 HOH HOH . M 6 HOH A 8 308 66 HOH HOH . M 6 HOH A 9 309 96 HOH HOH . M 6 HOH A 10 310 93 HOH HOH . M 6 HOH A 11 311 22 HOH HOH . M 6 HOH A 12 312 155 HOH HOH . M 6 HOH A 13 313 36 HOH HOH . M 6 HOH A 14 314 41 HOH HOH . M 6 HOH A 15 315 81 HOH HOH . M 6 HOH A 16 316 147 HOH HOH . M 6 HOH A 17 317 47 HOH HOH . M 6 HOH A 18 318 70 HOH HOH . M 6 HOH A 19 319 181 HOH HOH . M 6 HOH A 20 320 97 HOH HOH . M 6 HOH A 21 321 115 HOH HOH . M 6 HOH A 22 322 46 HOH HOH . M 6 HOH A 23 323 8 HOH HOH . M 6 HOH A 24 324 77 HOH HOH . M 6 HOH A 25 325 11 HOH HOH . M 6 HOH A 26 326 171 HOH HOH . M 6 HOH A 27 327 54 HOH HOH . M 6 HOH A 28 328 49 HOH HOH . M 6 HOH A 29 329 62 HOH HOH . M 6 HOH A 30 330 2 HOH HOH . M 6 HOH A 31 331 42 HOH HOH . M 6 HOH A 32 332 20 HOH HOH . M 6 HOH A 33 333 9 HOH HOH . M 6 HOH A 34 334 134 HOH HOH . M 6 HOH A 35 335 48 HOH HOH . M 6 HOH A 36 336 4 HOH HOH . M 6 HOH A 37 337 176 HOH HOH . M 6 HOH A 38 338 72 HOH HOH . M 6 HOH A 39 339 30 HOH HOH . M 6 HOH A 40 340 13 HOH HOH . M 6 HOH A 41 341 94 HOH HOH . M 6 HOH A 42 342 150 HOH HOH . M 6 HOH A 43 343 3 HOH HOH . M 6 HOH A 44 344 18 HOH HOH . M 6 HOH A 45 345 35 HOH HOH . M 6 HOH A 46 346 154 HOH HOH . M 6 HOH A 47 347 65 HOH HOH . M 6 HOH A 48 348 61 HOH HOH . M 6 HOH A 49 349 78 HOH HOH . M 6 HOH A 50 350 119 HOH HOH . M 6 HOH A 51 351 143 HOH HOH . M 6 HOH A 52 352 84 HOH HOH . M 6 HOH A 53 353 182 HOH HOH . M 6 HOH A 54 354 129 HOH HOH . M 6 HOH A 55 355 76 HOH HOH . M 6 HOH A 56 356 109 HOH HOH . M 6 HOH A 57 357 55 HOH HOH . M 6 HOH A 58 358 151 HOH HOH . M 6 HOH A 59 359 25 HOH HOH . M 6 HOH A 60 360 71 HOH HOH . M 6 HOH A 61 361 107 HOH HOH . M 6 HOH A 62 362 80 HOH HOH . M 6 HOH A 63 363 6 HOH HOH . M 6 HOH A 64 364 73 HOH HOH . M 6 HOH A 65 365 152 HOH HOH . M 6 HOH A 66 366 116 HOH HOH . M 6 HOH A 67 367 7 HOH HOH . M 6 HOH A 68 368 53 HOH HOH . M 6 HOH A 69 369 32 HOH HOH . M 6 HOH A 70 370 52 HOH HOH . M 6 HOH A 71 371 14 HOH HOH . M 6 HOH A 72 372 12 HOH HOH . M 6 HOH A 73 373 135 HOH HOH . M 6 HOH A 74 374 130 HOH HOH . M 6 HOH A 75 375 16 HOH HOH . M 6 HOH A 76 376 40 HOH HOH . M 6 HOH A 77 377 127 HOH HOH . M 6 HOH A 78 378 157 HOH HOH . M 6 HOH A 79 379 15 HOH HOH . M 6 HOH A 80 380 39 HOH HOH . M 6 HOH A 81 381 173 HOH HOH . M 6 HOH A 82 382 29 HOH HOH . M 6 HOH A 83 383 57 HOH HOH . M 6 HOH A 84 384 82 HOH HOH . M 6 HOH A 85 385 17 HOH HOH . M 6 HOH A 86 386 23 HOH HOH . M 6 HOH A 87 387 140 HOH HOH . M 6 HOH A 88 388 60 HOH HOH . M 6 HOH A 89 389 58 HOH HOH . M 6 HOH A 90 390 141 HOH HOH . M 6 HOH A 91 391 186 HOH HOH . M 6 HOH A 92 392 24 HOH HOH . M 6 HOH A 93 393 90 HOH HOH . M 6 HOH A 94 394 138 HOH HOH . M 6 HOH A 95 395 74 HOH HOH . M 6 HOH A 96 396 1 HOH HOH . M 6 HOH A 97 397 92 HOH HOH . M 6 HOH A 98 398 125 HOH HOH . M 6 HOH A 99 399 19 HOH HOH . M 6 HOH A 100 400 172 HOH HOH . M 6 HOH A 101 401 113 HOH HOH . M 6 HOH A 102 402 21 HOH HOH . M 6 HOH A 103 403 95 HOH HOH . M 6 HOH A 104 404 27 HOH HOH . M 6 HOH A 105 405 89 HOH HOH . M 6 HOH A 106 406 69 HOH HOH . M 6 HOH A 107 407 169 HOH HOH . M 6 HOH A 108 408 75 HOH HOH . M 6 HOH A 109 409 38 HOH HOH . M 6 HOH A 110 410 45 HOH HOH . M 6 HOH A 111 411 100 HOH HOH . M 6 HOH A 112 412 170 HOH HOH . M 6 HOH A 113 413 31 HOH HOH . M 6 HOH A 114 414 120 HOH HOH . M 6 HOH A 115 415 26 HOH HOH . M 6 HOH A 116 416 28 HOH HOH . M 6 HOH A 117 417 68 HOH HOH . M 6 HOH A 118 418 91 HOH HOH . M 6 HOH A 119 419 183 HOH HOH . M 6 HOH A 120 420 33 HOH HOH . M 6 HOH A 121 421 104 HOH HOH . M 6 HOH A 122 422 98 HOH HOH . M 6 HOH A 123 423 43 HOH HOH . M 6 HOH A 124 424 5 HOH HOH . M 6 HOH A 125 425 136 HOH HOH . M 6 HOH A 126 426 180 HOH HOH . M 6 HOH A 127 427 118 HOH HOH . M 6 HOH A 128 428 167 HOH HOH . M 6 HOH A 129 429 44 HOH HOH . M 6 HOH A 130 430 83 HOH HOH . M 6 HOH A 131 431 51 HOH HOH . M 6 HOH A 132 432 124 HOH HOH . M 6 HOH A 133 433 37 HOH HOH . M 6 HOH A 134 434 148 HOH HOH . M 6 HOH A 135 435 87 HOH HOH . M 6 HOH A 136 436 139 HOH HOH . M 6 HOH A 137 437 114 HOH HOH . M 6 HOH A 138 438 34 HOH HOH . M 6 HOH A 139 439 175 HOH HOH . M 6 HOH A 140 440 64 HOH HOH . M 6 HOH A 141 441 111 HOH HOH . M 6 HOH A 142 442 184 HOH HOH . M 6 HOH A 143 443 158 HOH HOH . M 6 HOH A 144 444 190 HOH HOH . M 6 HOH A 145 445 63 HOH HOH . M 6 HOH A 146 446 144 HOH HOH . M 6 HOH A 147 447 164 HOH HOH . M 6 HOH A 148 448 126 HOH HOH . M 6 HOH A 149 449 149 HOH HOH . M 6 HOH A 150 450 145 HOH HOH . M 6 HOH A 151 451 108 HOH HOH . M 6 HOH A 152 452 160 HOH HOH . M 6 HOH A 153 453 163 HOH HOH . M 6 HOH A 154 454 142 HOH HOH . M 6 HOH A 155 455 88 HOH HOH . M 6 HOH A 156 456 159 HOH HOH . M 6 HOH A 157 457 132 HOH HOH . M 6 HOH A 158 458 85 HOH HOH . M 6 HOH A 159 459 131 HOH HOH . M 6 HOH A 160 460 133 HOH HOH . M 6 HOH A 161 461 112 HOH HOH . M 6 HOH A 162 462 188 HOH HOH . M 6 HOH A 163 463 179 HOH HOH . M 6 HOH A 164 464 103 HOH HOH . M 6 HOH A 165 465 79 HOH HOH . M 6 HOH A 166 466 153 HOH HOH . M 6 HOH A 167 467 166 HOH HOH . M 6 HOH A 168 468 156 HOH HOH . M 6 HOH A 169 469 102 HOH HOH . M 6 HOH A 170 470 106 HOH HOH . M 6 HOH A 171 471 178 HOH HOH . M 6 HOH A 172 472 162 HOH HOH . M 6 HOH A 173 473 122 HOH HOH . M 6 HOH A 174 474 165 HOH HOH . M 6 HOH A 175 475 101 HOH HOH . M 6 HOH A 176 476 146 HOH HOH . M 6 HOH A 177 477 121 HOH HOH . M 6 HOH A 178 478 110 HOH HOH . M 6 HOH A 179 479 56 HOH HOH . M 6 HOH A 180 480 185 HOH HOH . M 6 HOH A 181 481 117 HOH HOH . M 6 HOH A 182 482 105 HOH HOH . M 6 HOH A 183 483 128 HOH HOH . M 6 HOH A 184 484 174 HOH HOH . M 6 HOH A 185 485 67 HOH HOH . M 6 HOH A 186 486 50 HOH HOH . M 6 HOH A 187 487 168 HOH HOH . M 6 HOH A 188 488 99 HOH HOH . M 6 HOH A 189 489 161 HOH HOH . M 6 HOH A 190 490 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 12P . . . H 3 -18.447 -6.475 -41.128 1 52.86 ? O10 12P 207 A 1 HETATM 2 C C9 12P . . . H 3 -18.586 -7.574 -40.271 1 54.61 ? C9 12P 207 A 1 HETATM 3 C C8 12P . . . H 3 -19.604 -7.253 -39.178 1 57.57 ? C8 12P 207 A 1 HETATM 4 O O7 12P . . . H 3 -18.944 -6.71 -38.07 1 47.26 ? O7 12P 207 A 1 HETATM 5 C C6 12P . . . H 3 -19.251 -5.367 -37.83 1 80.09 ? C6 12P 207 A 1 HETATM 6 C C5 12P . . . H 3 -18.435 -4.863 -36.642 1 77.02 ? C5 12P 207 A 1 HETATM 7 O O4 12P . . . H 3 -18.154 -3.502 -36.807 1 63.44 ? O4 12P 207 A 1 HETATM 8 C C3 12P . . . H 3 -16.798 -3.191 -36.676 1 47.83 ? C3 12P 207 A 1 HETATM 9 C C2 12P . . . H 3 -16.409 -2.161 -37.732 1 44.06 ? C2 12P 207 A 1 HETATM 10 O O1 12P . . . H 3 -15.013 -2.133 -37.855 1 56.42 ? O1 12P 207 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 10 #