data_6Y47 # _model_server_result.job_id BUyGnw0YEJCMFL6HYX9h1A _model_server_result.datetime_utc '2024-11-25 20:36:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6Y47 # _exptl.entry_id 6Y47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 962.976 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(5~{S})-6-azanyl-5-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-6-oxidanylidene-hexyl]-2,3-bis(oxidanyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y47 _cell.length_a 86.01 _cell.length_b 156.951 _cell.length_c 77.563 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 487 A CYS 484 1_555 A SG CYS 494 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B OAS OWT . A OWT 801 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 B OAT OWT . A OWT 801 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 B OBC OWT . A OWT 801 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 B OBD OWT . A OWT 801 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 C O1 EDO . A EDO 802 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 C O2 EDO . A EDO 802 1_555 D FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C45 H55 F N10 O13' _chem_comp.formula_weight 962.976 _chem_comp.id OWT _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(5~{S})-6-azanyl-5-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-6-oxidanylidene-hexyl]-2,3-bis(oxidanyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAM OWT doub 244 n y CAN CAO OWT sing 245 n y CAM CAR OWT sing 246 n y OAV CAU OWT doub 247 n n CAO CAP OWT doub 248 n y CAR CAU OWT sing 249 n n CAR CAQ OWT doub 250 n y CAU NAL OWT sing 251 n n CAP CAQ OWT sing 252 n y CAP OAT OWT sing 253 n n CAQ OAS OWT sing 254 n n CAJ CAK OWT sing 255 n n CAJ CAI OWT sing 256 n n NAL CAK OWT sing 257 n n CB CAI OWT sing 258 n n CB CA OWT sing 259 n n CA N OWT sing 260 n n CA C OWT sing 261 n n OBF CBE OWT doub 262 n n OBC CBA OWT sing 263 n n N CBE OWT sing 264 n n CBE CBB OWT sing 265 n n CBA CBB OWT doub 266 n y CBA CAZ OWT sing 267 n y CBB CAW OWT sing 268 n y OBD CAZ OWT sing 269 n n CAZ CAY OWT doub 270 n y CAW CAX OWT doub 271 n y CAY CAX OWT sing 272 n y C O OWT doub 273 n n C NAA OWT sing 274 n n N H1 OWT sing 275 n n CA H2 OWT sing 276 n n CB H3 OWT sing 277 n n CB H4 OWT sing 278 n n CAI H5 OWT sing 279 n n CAI H6 OWT sing 280 n n CAJ H7 OWT sing 281 n n CAJ H8 OWT sing 282 n n CAK H9 OWT sing 283 n n CAK H10 OWT sing 284 n n CAM H11 OWT sing 285 n n CAN H12 OWT sing 286 n n CAO H13 OWT sing 287 n n CAW H14 OWT sing 288 n n CAX H15 OWT sing 289 n n CAY H16 OWT sing 290 n n NAA H17 OWT sing 291 n n NAA C1 OWT sing 292 n n NAL H19 OWT sing 293 n n OAS H20 OWT sing 294 n n OAT H21 OWT sing 295 n n OBC H22 OWT sing 296 n n OBD H23 OWT sing 297 n n C2 N1 OWT sing 298 n y N1 N2 OWT doub 299 n y N2 N3 OWT sing 300 n y N3 C6 OWT sing 301 n y C6 C2 OWT doub 302 n y C1 C2 OWT sing 303 n n C3 C4 OWT sing 304 n n O1 C5 OWT sing 305 n n N3 C3 OWT sing 306 n n C4 O1 OWT sing 307 n n C7 C5 OWT sing 308 n n C7 O3 OWT sing 309 n n C8 C9 OWT sing 310 n n C8 O3 OWT sing 311 n n C10 C11 OWT sing 312 n n C11 N4 OWT sing 313 n n N4 C13 OWT sing 314 n n C13 C14 OWT sing 315 n n C14 N5 OWT sing 316 n n N5 C10 OWT sing 317 n n N4 C9 OWT sing 318 n n O2 C9 OWT doub 319 n n C12 C15 OWT sing 320 n y C15 C16 OWT doub 321 n y C16 C17 OWT sing 322 n y C17 C18 OWT doub 323 n y C18 C19 OWT sing 324 n y C19 C12 OWT doub 325 n y C16 N5 OWT sing 326 n n F1 C17 OWT sing 327 n n O5 C21 OWT sing 328 n n C21 N6 OWT sing 329 n n N6 C23 OWT sing 330 n n C23 C24 OWT sing 331 n n C24 O5 OWT sing 332 n n N6 C19 OWT sing 333 n n O4 C21 OWT doub 334 n n C20 N7 OWT sing 335 n n C24 C20 OWT sing 336 n n C22 C25 OWT sing 337 n n N7 C22 OWT sing 338 n n O6 C22 OWT doub 339 n n C1 H18 OWT sing 340 n n C1 H24 OWT sing 341 n n C6 H25 OWT sing 342 n n C3 H26 OWT sing 343 n n C3 H27 OWT sing 344 n n C4 H28 OWT sing 345 n n C4 H29 OWT sing 346 n n C5 H30 OWT sing 347 n n C5 H31 OWT sing 348 n n C7 H32 OWT sing 349 n n C7 H33 OWT sing 350 n n C8 H34 OWT sing 351 n n C8 H35 OWT sing 352 n n C10 H36 OWT sing 353 n n C10 H37 OWT sing 354 n n C11 H38 OWT sing 355 n n C11 H39 OWT sing 356 n n C13 H40 OWT sing 357 n n C13 H41 OWT sing 358 n n C14 H42 OWT sing 359 n n C14 H43 OWT sing 360 n n C12 H44 OWT sing 361 n n C15 H46 OWT sing 362 n n C18 H50 OWT sing 363 n n C23 H53 OWT sing 364 n n C23 H54 OWT sing 365 n n C24 H55 OWT sing 366 n n C20 H56 OWT sing 367 n n C25 H57 OWT sing 368 n n C25 H58 OWT sing 369 n n C25 H59 OWT sing 370 n n H60 N7 OWT sing 371 n n H61 C20 OWT sing 372 n n # _atom_sites.entry_id 6Y47 _atom_sites.fract_transf_matrix[1][1] 0.011627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OWT A 1 801 801 OWT DRG . C 3 EDO A 1 802 901 EDO EDO . D 4 FE A 1 803 1 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OWT . . . B 2 -89.806 33.651 124.642 1 149.24 ? N OWT 801 A 1 HETATM 2 C CA OWT . . . B 2 -91.23 33.943 124.47 1 144.48 ? CA OWT 801 A 1 HETATM 3 C C OWT . . . B 2 -91.97 33.817 125.811 1 144.72 ? C OWT 801 A 1 HETATM 4 O O OWT . . . B 2 -92.692 34.68 126.212 1 152.78 ? O OWT 801 A 1 HETATM 5 C CB OWT . . . B 2 -91.832 33.087 123.34 1 135.64 ? CB OWT 801 A 1 HETATM 6 C CAI OWT . . . B 2 -92.147 31.639 123.736 1 138.75 ? CAI OWT 801 A 1 HETATM 7 C CAJ OWT . . . B 2 -92.382 30.711 122.541 1 145.63 ? CAJ OWT 801 A 1 HETATM 8 C CAK OWT . . . B 2 -91.76 29.329 122.747 1 144.94 ? CAK OWT 801 A 1 HETATM 9 C CAM OWT . . . B 2 -87.596 28.217 120.203 1 117.62 ? CAM OWT 801 A 1 HETATM 10 C CAN OWT . . . B 2 -86.222 28.242 120.026 1 112.77 ? CAN OWT 801 A 1 HETATM 11 C CAO OWT . . . B 2 -85.401 28.759 121.015 1 116.83 ? CAO OWT 801 A 1 HETATM 12 C CAP OWT . . . B 2 -85.965 29.25 122.179 1 147.29 ? CAP OWT 801 A 1 HETATM 13 C CAQ OWT . . . B 2 -87.339 29.226 122.356 1 147.95 ? CAQ OWT 801 A 1 HETATM 14 C CAR OWT . . . B 2 -88.158 28.709 121.364 1 130.01 ? CAR OWT 801 A 1 HETATM 15 C CAU OWT . . . B 2 -89.673 28.673 121.545 1 122.4 ? CAU OWT 801 A 1 HETATM 16 C CAW OWT . . . B 2 -86.661 35.857 124.986 1 129.09 ? CAW OWT 801 A 1 HETATM 17 C CAX OWT . . . B 2 -85.281 35.815 125.099 1 131.95 ? CAX OWT 801 A 1 HETATM 18 C CAY OWT . . . B 2 -84.623 34.595 125.048 1 139.6 ? CAY OWT 801 A 1 HETATM 19 C CAZ OWT . . . B 2 -85.348 33.425 124.893 1 134.85 ? CAZ OWT 801 A 1 HETATM 20 C CBA OWT . . . B 2 -86.731 33.469 124.782 1 156.36 ? CBA OWT 801 A 1 HETATM 21 C CBB OWT . . . B 2 -87.394 34.691 124.835 1 143.37 ? CBB OWT 801 A 1 HETATM 22 C CBE OWT . . . B 2 -88.916 34.801 124.694 1 146.86 ? CBE OWT 801 A 1 HETATM 23 N NAA OWT . . . B 2 -91.746 32.634 126.615 1 140.37 ? NAA OWT 801 A 1 HETATM 24 N NAL OWT . . . B 2 -90.313 29.401 122.626 1 130.85 ? NAL OWT 801 A 1 HETATM 25 O OAS OWT . . . B 2 -87.91 29.722 123.535 1 162.67 ? OAS OWT 801 A 1 HETATM 26 O OAT OWT . . . B 2 -85.143 29.773 123.183 1 181.14 ? OAT OWT 801 A 1 HETATM 27 O OAV OWT . . . B 2 -90.339 28.041 120.795 1 109.67 ? OAV OWT 801 A 1 HETATM 28 O OBC OWT . . . B 2 -87.458 32.283 124.622 1 196.09 ? OBC OWT 801 A 1 HETATM 29 O OBD OWT . . . B 2 -84.674 32.196 124.848 1 119.59 ? OBD OWT 801 A 1 HETATM 30 O OBF OWT . . . B 2 -89.394 35.883 124.588 1 142.22 ? OBF OWT 801 A 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #