data_6Y4F # _model_server_result.job_id CtPjXBRH6VvMQJQaR2G7wA _model_server_result.datetime_utc '2024-10-10 13:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6Y4F # _exptl.entry_id 6Y4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y4F _cell.length_a 26.655 _cell.length_b 54.49 _cell.length_c 79.964 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 60 1_555 A SG CYS 42 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 104 A CYS 128 1_555 A SG CYS 128 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A NE2 HIS 48 A HIS 72 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A ND1 HIS 50 A HIS 74 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 A ND1 HIS 93 A HIS 117 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 B ZN ZN . A ZN 201 1_555 C OE2 GLU . A GLU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 6Y4F _atom_sites.fract_transf_matrix[1][1] 0.037516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 300 ZN ZN . C 3 GLU A 1 202 1 GLU GLU . D 4 HOH A 1 301 175 HOH HOH . D 4 HOH A 2 302 90 HOH HOH . D 4 HOH A 3 303 83 HOH HOH . D 4 HOH A 4 304 146 HOH HOH . D 4 HOH A 5 305 121 HOH HOH . D 4 HOH A 6 306 115 HOH HOH . D 4 HOH A 7 307 52 HOH HOH . D 4 HOH A 8 308 107 HOH HOH . D 4 HOH A 9 309 100 HOH HOH . D 4 HOH A 10 310 73 HOH HOH . D 4 HOH A 11 311 123 HOH HOH . D 4 HOH A 12 312 21 HOH HOH . D 4 HOH A 13 313 36 HOH HOH . D 4 HOH A 14 314 170 HOH HOH . D 4 HOH A 15 315 2 HOH HOH . D 4 HOH A 16 316 154 HOH HOH . D 4 HOH A 17 317 71 HOH HOH . D 4 HOH A 18 318 8 HOH HOH . D 4 HOH A 19 319 61 HOH HOH . D 4 HOH A 20 320 19 HOH HOH . D 4 HOH A 21 321 120 HOH HOH . D 4 HOH A 22 322 149 HOH HOH . D 4 HOH A 23 323 39 HOH HOH . D 4 HOH A 24 324 44 HOH HOH . D 4 HOH A 25 325 99 HOH HOH . D 4 HOH A 26 326 169 HOH HOH . D 4 HOH A 27 327 122 HOH HOH . D 4 HOH A 28 328 32 HOH HOH . D 4 HOH A 29 329 74 HOH HOH . D 4 HOH A 30 330 23 HOH HOH . D 4 HOH A 31 331 58 HOH HOH . D 4 HOH A 32 332 136 HOH HOH . D 4 HOH A 33 333 51 HOH HOH . D 4 HOH A 34 334 185 HOH HOH . D 4 HOH A 35 335 12 HOH HOH . D 4 HOH A 36 336 50 HOH HOH . D 4 HOH A 37 337 128 HOH HOH . D 4 HOH A 38 338 157 HOH HOH . D 4 HOH A 39 339 179 HOH HOH . D 4 HOH A 40 340 77 HOH HOH . D 4 HOH A 41 341 148 HOH HOH . D 4 HOH A 42 342 38 HOH HOH . D 4 HOH A 43 343 92 HOH HOH . D 4 HOH A 44 344 66 HOH HOH . D 4 HOH A 45 345 57 HOH HOH . D 4 HOH A 46 346 60 HOH HOH . D 4 HOH A 47 347 14 HOH HOH . D 4 HOH A 48 348 6 HOH HOH . D 4 HOH A 49 349 172 HOH HOH . D 4 HOH A 50 350 134 HOH HOH . D 4 HOH A 51 351 135 HOH HOH . D 4 HOH A 52 352 33 HOH HOH . D 4 HOH A 53 353 35 HOH HOH . D 4 HOH A 54 354 178 HOH HOH . D 4 HOH A 55 355 166 HOH HOH . D 4 HOH A 56 356 97 HOH HOH . D 4 HOH A 57 357 112 HOH HOH . D 4 HOH A 58 358 143 HOH HOH . D 4 HOH A 59 359 45 HOH HOH . D 4 HOH A 60 360 65 HOH HOH . D 4 HOH A 61 361 89 HOH HOH . D 4 HOH A 62 362 42 HOH HOH . D 4 HOH A 63 363 4 HOH HOH . D 4 HOH A 64 364 43 HOH HOH . D 4 HOH A 65 365 15 HOH HOH . D 4 HOH A 66 366 158 HOH HOH . D 4 HOH A 67 367 174 HOH HOH . D 4 HOH A 68 368 96 HOH HOH . D 4 HOH A 69 369 37 HOH HOH . D 4 HOH A 70 370 29 HOH HOH . D 4 HOH A 71 371 46 HOH HOH . D 4 HOH A 72 372 59 HOH HOH . D 4 HOH A 73 373 16 HOH HOH . D 4 HOH A 74 374 13 HOH HOH . D 4 HOH A 75 375 55 HOH HOH . D 4 HOH A 76 376 103 HOH HOH . D 4 HOH A 77 377 9 HOH HOH . D 4 HOH A 78 378 1 HOH HOH . D 4 HOH A 79 379 180 HOH HOH . D 4 HOH A 80 380 126 HOH HOH . D 4 HOH A 81 381 64 HOH HOH . D 4 HOH A 82 382 129 HOH HOH . D 4 HOH A 83 383 11 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 24 HOH HOH . D 4 HOH A 86 386 27 HOH HOH . D 4 HOH A 87 387 53 HOH HOH . D 4 HOH A 88 388 86 HOH HOH . D 4 HOH A 89 389 167 HOH HOH . D 4 HOH A 90 390 5 HOH HOH . D 4 HOH A 91 391 109 HOH HOH . D 4 HOH A 92 392 159 HOH HOH . D 4 HOH A 93 393 101 HOH HOH . D 4 HOH A 94 394 127 HOH HOH . D 4 HOH A 95 395 68 HOH HOH . D 4 HOH A 96 396 156 HOH HOH . D 4 HOH A 97 397 98 HOH HOH . D 4 HOH A 98 398 137 HOH HOH . D 4 HOH A 99 399 151 HOH HOH . D 4 HOH A 100 400 150 HOH HOH . D 4 HOH A 101 401 7 HOH HOH . D 4 HOH A 102 402 47 HOH HOH . D 4 HOH A 103 403 93 HOH HOH . D 4 HOH A 104 404 91 HOH HOH . D 4 HOH A 105 405 80 HOH HOH . D 4 HOH A 106 406 41 HOH HOH . D 4 HOH A 107 407 104 HOH HOH . D 4 HOH A 108 408 153 HOH HOH . D 4 HOH A 109 409 85 HOH HOH . D 4 HOH A 110 410 26 HOH HOH . D 4 HOH A 111 411 114 HOH HOH . D 4 HOH A 112 412 28 HOH HOH . D 4 HOH A 113 413 183 HOH HOH . D 4 HOH A 114 414 72 HOH HOH . D 4 HOH A 115 415 168 HOH HOH . D 4 HOH A 116 416 17 HOH HOH . D 4 HOH A 117 417 30 HOH HOH . D 4 HOH A 118 418 173 HOH HOH . D 4 HOH A 119 419 25 HOH HOH . D 4 HOH A 120 420 87 HOH HOH . D 4 HOH A 121 421 131 HOH HOH . D 4 HOH A 122 422 155 HOH HOH . D 4 HOH A 123 423 75 HOH HOH . D 4 HOH A 124 424 163 HOH HOH . D 4 HOH A 125 425 10 HOH HOH . D 4 HOH A 126 426 125 HOH HOH . D 4 HOH A 127 427 102 HOH HOH . D 4 HOH A 128 428 152 HOH HOH . D 4 HOH A 129 429 184 HOH HOH . D 4 HOH A 130 430 119 HOH HOH . D 4 HOH A 131 431 111 HOH HOH . D 4 HOH A 132 432 162 HOH HOH . D 4 HOH A 133 433 79 HOH HOH . D 4 HOH A 134 434 108 HOH HOH . D 4 HOH A 135 435 76 HOH HOH . D 4 HOH A 136 436 20 HOH HOH . D 4 HOH A 137 437 140 HOH HOH . D 4 HOH A 138 438 182 HOH HOH . D 4 HOH A 139 439 3 HOH HOH . D 4 HOH A 140 440 67 HOH HOH . D 4 HOH A 141 441 176 HOH HOH . D 4 HOH A 142 442 31 HOH HOH . D 4 HOH A 143 443 147 HOH HOH . D 4 HOH A 144 444 141 HOH HOH . D 4 HOH A 145 445 34 HOH HOH . D 4 HOH A 146 446 22 HOH HOH . D 4 HOH A 147 447 69 HOH HOH . D 4 HOH A 148 448 164 HOH HOH . D 4 HOH A 149 449 81 HOH HOH . D 4 HOH A 150 450 105 HOH HOH . D 4 HOH A 151 451 177 HOH HOH . D 4 HOH A 152 452 78 HOH HOH . D 4 HOH A 153 453 48 HOH HOH . D 4 HOH A 154 454 144 HOH HOH . D 4 HOH A 155 455 40 HOH HOH . D 4 HOH A 156 456 70 HOH HOH . D 4 HOH A 157 457 116 HOH HOH . D 4 HOH A 158 458 49 HOH HOH . D 4 HOH A 159 459 106 HOH HOH . D 4 HOH A 160 460 56 HOH HOH . D 4 HOH A 161 461 63 HOH HOH . D 4 HOH A 162 462 145 HOH HOH . D 4 HOH A 163 463 54 HOH HOH . D 4 HOH A 164 464 118 HOH HOH . D 4 HOH A 165 465 110 HOH HOH . D 4 HOH A 166 466 138 HOH HOH . D 4 HOH A 167 467 113 HOH HOH . D 4 HOH A 168 468 132 HOH HOH . D 4 HOH A 169 469 171 HOH HOH . D 4 HOH A 170 470 18 HOH HOH . D 4 HOH A 171 471 160 HOH HOH . D 4 HOH A 172 472 62 HOH HOH . D 4 HOH A 173 473 133 HOH HOH . D 4 HOH A 174 474 82 HOH HOH . D 4 HOH A 175 475 94 HOH HOH . D 4 HOH A 176 476 161 HOH HOH . D 4 HOH A 177 477 139 HOH HOH . D 4 HOH A 178 478 117 HOH HOH . D 4 HOH A 179 479 124 HOH HOH . D 4 HOH A 180 480 165 HOH HOH . D 4 HOH A 181 481 181 HOH HOH . D 4 HOH A 182 482 95 HOH HOH . D 4 HOH A 183 483 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . C 3 -4.973 1.796 30.816 0.94 48.55 ? N GLU 202 A 1 HETATM 2 C CA GLU . . . C 3 -6.24 2.574 30.917 0.94 37.06 ? CA GLU 202 A 1 HETATM 3 C C GLU . . . C 3 -6.785 2.491 32.339 0.94 36.04 ? C GLU 202 A 1 HETATM 4 O O GLU . . . C 3 -6.859 1.409 32.925 0.94 30.99 ? O GLU 202 A 1 HETATM 5 C CB GLU . . . C 3 -7.269 2.053 29.91 0.94 24.5 ? CB GLU 202 A 1 HETATM 6 C CG GLU . . . C 3 -8.154 3.137 29.317 0.94 15.47 ? CG GLU 202 A 1 HETATM 7 C CD GLU . . . C 3 -9.007 2.643 28.156 0.94 8.58 ? CD GLU 202 A 1 HETATM 8 O OE1 GLU . . . C 3 -8.627 2.869 26.988 0.94 6.86 ? OE1 GLU 202 A 1 HETATM 9 O OE2 GLU . . . C 3 -10.06 2.026 28.409 0.94 6.22 ? OE2 GLU 202 A 1 HETATM 10 O OXT GLU . . . C 3 -7.151 3.505 32.94 0.94 32.78 ? OXT GLU 202 A 1 HETATM 11 H H1 GLU . . . C 3 -4.689 1.798 29.972 0.94 58.27 ? H1 GLU 202 A 1 HETATM 12 H H2 GLU . . . C 3 -4.354 2.167 31.337 0.94 58.27 ? H2 GLU 202 A 1 HETATM 13 H H3 GLU . . . C 3 -5.117 0.958 31.078 0.94 58.27 ? H3 GLU 202 A 1 HETATM 14 H HA GLU . . . C 3 -6.076 3.506 30.705 0.94 44.49 ? HA GLU 202 A 1 HETATM 15 H HB2 GLU . . . C 3 -6.799 1.623 29.179 0.94 29.41 ? HB2 GLU 202 A 1 HETATM 16 H HB3 GLU . . . C 3 -7.845 1.413 30.357 0.94 29.41 ? HB3 GLU 202 A 1 HETATM 17 H HG2 GLU . . . C 3 -8.751 3.468 30.006 0.94 18.58 ? HG2 GLU 202 A 1 HETATM 18 H HG3 GLU . . . C 3 -7.593 3.857 28.99 0.94 18.58 ? HG3 GLU 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #