data_6Y4P # _model_server_result.job_id gPuPQ8vSngrLutZA0E6DcQ _model_server_result.datetime_utc '2024-11-04 20:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6Y4P # _exptl.entry_id 6Y4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y4P _cell.length_a 37.59 _cell.length_b 42.36 _cell.length_c 90.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 20 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A OD1 ASP 25 A ASP 24 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A O THR 27 A THR 26 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 A OD1 ASP 57 A ASP 56 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 A OD1 ASP 59 A ASP 58 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc9 A OD1 ASN 61 A ASN 60 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 A O THR 63 A THR 62 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc11 A OE1 GLU 68 A GLU 67 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc12 A OE2 GLU 68 A GLU 67 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc13 A OD1 ASP 94 A ASP 93 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 A OD1 ASP 96 A ASP 95 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc15 A OD1 ASN 98 A ASN 97 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc16 A O TYR 100 A TYR 99 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc17 A OE1 GLU 105 A GLU 104 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc18 A OE2 GLU 105 A GLU 104 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc19 A OD1 ASP 130 A ASP 129 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc20 A OD1 ASP 132 A ASP 131 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc21 A OD1 ASP 134 A ASP 133 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc22 A O GLN 136 A GLN 135 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc23 A OE1 GLU 141 A GLU 140 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc24 A OE2 GLU 141 A GLU 140 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc25 C CA CA . A CA 201 1_555 G O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc26 D CA CA . A CA 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc27 E CA CA . A CA 203 1_555 G O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc28 F CA CA . A CA 204 1_555 G O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y4P _atom_sites.fract_transf_matrix[1][1] 0.026603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 1 CA CA . D 3 CA A 1 202 2 CA CA . E 3 CA A 1 203 3 CA CA . F 3 CA A 1 204 4 CA CA . G 4 HOH A 1 301 27 HOH HOH . G 4 HOH A 2 302 11 HOH HOH . G 4 HOH A 3 303 49 HOH HOH . G 4 HOH A 4 304 57 HOH HOH . G 4 HOH A 5 305 28 HOH HOH . G 4 HOH A 6 306 14 HOH HOH . G 4 HOH A 7 307 29 HOH HOH . G 4 HOH A 8 308 8 HOH HOH . G 4 HOH A 9 309 33 HOH HOH . G 4 HOH A 10 310 45 HOH HOH . G 4 HOH A 11 311 22 HOH HOH . G 4 HOH A 12 312 7 HOH HOH . G 4 HOH A 13 313 31 HOH HOH . G 4 HOH A 14 314 6 HOH HOH . G 4 HOH A 15 315 18 HOH HOH . G 4 HOH A 16 316 25 HOH HOH . G 4 HOH A 17 317 32 HOH HOH . G 4 HOH A 18 318 10 HOH HOH . G 4 HOH A 19 319 23 HOH HOH . G 4 HOH A 20 320 60 HOH HOH . G 4 HOH A 21 321 12 HOH HOH . G 4 HOH A 22 322 61 HOH HOH . G 4 HOH A 23 323 16 HOH HOH . G 4 HOH A 24 324 38 HOH HOH . G 4 HOH A 25 325 13 HOH HOH . G 4 HOH A 26 326 15 HOH HOH . G 4 HOH A 27 327 5 HOH HOH . G 4 HOH A 28 328 36 HOH HOH . G 4 HOH A 29 329 44 HOH HOH . G 4 HOH A 30 330 4 HOH HOH . G 4 HOH A 31 331 17 HOH HOH . G 4 HOH A 32 332 19 HOH HOH . G 4 HOH A 33 333 20 HOH HOH . G 4 HOH A 34 334 50 HOH HOH . G 4 HOH A 35 335 51 HOH HOH . G 4 HOH A 36 336 1 HOH HOH . G 4 HOH A 37 337 30 HOH HOH . G 4 HOH A 38 338 41 HOH HOH . G 4 HOH A 39 339 58 HOH HOH . G 4 HOH A 40 340 42 HOH HOH . G 4 HOH A 41 341 24 HOH HOH . G 4 HOH A 42 342 39 HOH HOH . G 4 HOH A 43 343 35 HOH HOH . G 4 HOH A 44 344 56 HOH HOH . G 4 HOH A 45 345 9 HOH HOH . G 4 HOH A 46 346 43 HOH HOH . G 4 HOH A 47 347 3 HOH HOH . G 4 HOH A 48 348 53 HOH HOH . G 4 HOH A 49 349 54 HOH HOH . G 4 HOH A 50 350 47 HOH HOH . G 4 HOH A 51 351 59 HOH HOH . G 4 HOH A 52 352 34 HOH HOH . G 4 HOH A 53 353 46 HOH HOH . G 4 HOH A 54 354 48 HOH HOH . H 4 HOH B 1 3701 52 HOH HOH . H 4 HOH B 2 3702 40 HOH HOH . H 4 HOH B 3 3703 2 HOH HOH . H 4 HOH B 4 3704 37 HOH HOH . H 4 HOH B 5 3705 21 HOH HOH . H 4 HOH B 6 3706 26 HOH HOH . H 4 HOH B 7 3707 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.787 _atom_site.Cartn_y 46.182 _atom_site.Cartn_z 37.836 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #