data_6Y4T # _model_server_result.job_id Rw5xon3ybcsm6J9fD-b8hQ _model_server_result.datetime_utc '2024-11-16 11:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y4T # _exptl.entry_id 6Y4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.714 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-~{N}-[[4-[[(2~{S})-1-[[(2~{S})-butan-2-yl]amino]-4-cyclohexyl-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y4T _cell.length_a 66.079 _cell.length_b 75.03 _cell.length_c 77.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H42 N6 O3' _chem_comp.formula_weight 558.714 _chem_comp.id O8W _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-~{N}-[[4-[[(2~{S})-1-[[(2~{S})-butan-2-yl]amino]-4-cyclohexyl-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 O8W sing 246 n n C27 C28 O8W sing 247 n n C25 C26 O8W sing 248 n n C25 C24 O8W sing 249 n n C26 C30 O8W sing 250 n n C28 C29 O8W sing 251 n n C29 C31 O8W sing 252 n n O C19 O8W doub 253 n n C24 C18 O8W sing 254 n n C30 C31 O8W sing 255 n n C19 C18 O8W sing 256 n n C19 N4 O8W sing 257 n n C18 N3 O8W sing 258 n n C21 C20 O8W sing 259 n n C21 C22 O8W sing 260 n n N3 C17 O8W sing 261 n n N4 C20 O8W sing 262 n n C20 C23 O8W sing 263 n n C17 O1 O8W doub 264 n n C17 C14 O8W sing 265 n n C15 C14 O8W doub 266 n y C15 C16 O8W sing 267 n y C14 C13 O8W sing 268 n y C16 C11 O8W doub 269 n y C13 C12 O8W doub 270 n y C11 C12 O8W sing 271 n y C11 C10 O8W sing 272 n n C10 N2 O8W sing 273 n n N2 C9 O8W sing 274 n n C9 O2 O8W doub 275 n n C9 C8 O8W sing 276 n n C6 C8 O8W sing 277 n y C6 N1 O8W doub 278 n y C8 C7 O8W doub 279 n y N1 N O8W sing 280 n y C7 N O8W sing 281 n y C7 N5 O8W sing 282 n n N C3 O8W sing 283 n n C3 C2 O8W doub 284 n y C3 C4 O8W sing 285 n y C2 C1 O8W sing 286 n y C4 C5 O8W doub 287 n y C1 C O8W doub 288 n y C5 C O8W sing 289 n y C4 H1 O8W sing 290 n n C5 H2 O8W sing 291 n n C6 H3 O8W sing 292 n n N2 H4 O8W sing 293 n n C10 H5 O8W sing 294 n n C10 H6 O8W sing 295 n n C12 H7 O8W sing 296 n n N3 H8 O8W sing 297 n n C13 H9 O8W sing 298 n n C15 H10 O8W sing 299 n n N4 H11 O8W sing 300 n n N5 H12 O8W sing 301 n n N5 H13 O8W sing 302 n n C2 H14 O8W sing 303 n n C1 H15 O8W sing 304 n n C H16 O8W sing 305 n n C16 H17 O8W sing 306 n n C18 H18 O8W sing 307 n n C20 H19 O8W sing 308 n n C23 H20 O8W sing 309 n n C23 H21 O8W sing 310 n n C23 H22 O8W sing 311 n n C21 H23 O8W sing 312 n n C21 H24 O8W sing 313 n n C22 H25 O8W sing 314 n n C22 H26 O8W sing 315 n n C22 H27 O8W sing 316 n n C24 H28 O8W sing 317 n n C24 H29 O8W sing 318 n n C25 H30 O8W sing 319 n n C25 H31 O8W sing 320 n n C26 H32 O8W sing 321 n n C30 H33 O8W sing 322 n n C30 H34 O8W sing 323 n n C31 H35 O8W sing 324 n n C31 H36 O8W sing 325 n n C29 H37 O8W sing 326 n n C29 H38 O8W sing 327 n n C28 H39 O8W sing 328 n n C28 H40 O8W sing 329 n n C27 H41 O8W sing 330 n n C27 H42 O8W sing 331 n n # _atom_sites.entry_id 6Y4T _atom_sites.fract_transf_matrix[1][1] 0.015133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O8W A 1 401 1 O8W XXX . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 3 EDO A 1 407 6 EDO EDO . I 3 EDO A 1 408 7 EDO EDO . J 4 HOH A 1 501 52 HOH HOH . J 4 HOH A 2 502 49 HOH HOH . J 4 HOH A 3 503 78 HOH HOH . J 4 HOH A 4 504 54 HOH HOH . J 4 HOH A 5 505 5 HOH HOH . J 4 HOH A 6 506 64 HOH HOH . J 4 HOH A 7 507 7 HOH HOH . J 4 HOH A 8 508 15 HOH HOH . J 4 HOH A 9 509 137 HOH HOH . J 4 HOH A 10 510 59 HOH HOH . J 4 HOH A 11 511 20 HOH HOH . J 4 HOH A 12 512 63 HOH HOH . J 4 HOH A 13 513 1 HOH HOH . J 4 HOH A 14 514 106 HOH HOH . J 4 HOH A 15 515 112 HOH HOH . J 4 HOH A 16 516 36 HOH HOH . J 4 HOH A 17 517 134 HOH HOH . J 4 HOH A 18 518 39 HOH HOH . J 4 HOH A 19 519 102 HOH HOH . J 4 HOH A 20 520 57 HOH HOH . J 4 HOH A 21 521 82 HOH HOH . J 4 HOH A 22 522 25 HOH HOH . J 4 HOH A 23 523 4 HOH HOH . J 4 HOH A 24 524 133 HOH HOH . J 4 HOH A 25 525 67 HOH HOH . J 4 HOH A 26 526 92 HOH HOH . J 4 HOH A 27 527 24 HOH HOH . J 4 HOH A 28 528 30 HOH HOH . J 4 HOH A 29 529 132 HOH HOH . J 4 HOH A 30 530 37 HOH HOH . J 4 HOH A 31 531 90 HOH HOH . J 4 HOH A 32 532 89 HOH HOH . J 4 HOH A 33 533 104 HOH HOH . J 4 HOH A 34 534 130 HOH HOH . J 4 HOH A 35 535 68 HOH HOH . J 4 HOH A 36 536 50 HOH HOH . J 4 HOH A 37 537 43 HOH HOH . J 4 HOH A 38 538 143 HOH HOH . J 4 HOH A 39 539 123 HOH HOH . J 4 HOH A 40 540 12 HOH HOH . J 4 HOH A 41 541 93 HOH HOH . J 4 HOH A 42 542 120 HOH HOH . J 4 HOH A 43 543 77 HOH HOH . J 4 HOH A 44 544 32 HOH HOH . J 4 HOH A 45 545 95 HOH HOH . J 4 HOH A 46 546 131 HOH HOH . J 4 HOH A 47 547 129 HOH HOH . J 4 HOH A 48 548 117 HOH HOH . J 4 HOH A 49 549 13 HOH HOH . J 4 HOH A 50 550 46 HOH HOH . J 4 HOH A 51 551 126 HOH HOH . J 4 HOH A 52 552 66 HOH HOH . J 4 HOH A 53 553 17 HOH HOH . J 4 HOH A 54 554 74 HOH HOH . J 4 HOH A 55 555 6 HOH HOH . J 4 HOH A 56 556 42 HOH HOH . J 4 HOH A 57 557 139 HOH HOH . J 4 HOH A 58 558 122 HOH HOH . J 4 HOH A 59 559 65 HOH HOH . J 4 HOH A 60 560 55 HOH HOH . J 4 HOH A 61 561 83 HOH HOH . J 4 HOH A 62 562 11 HOH HOH . J 4 HOH A 63 563 44 HOH HOH . J 4 HOH A 64 564 19 HOH HOH . J 4 HOH A 65 565 103 HOH HOH . J 4 HOH A 66 566 56 HOH HOH . J 4 HOH A 67 567 127 HOH HOH . J 4 HOH A 68 568 116 HOH HOH . J 4 HOH A 69 569 70 HOH HOH . J 4 HOH A 70 570 110 HOH HOH . J 4 HOH A 71 571 16 HOH HOH . J 4 HOH A 72 572 21 HOH HOH . J 4 HOH A 73 573 47 HOH HOH . J 4 HOH A 74 574 146 HOH HOH . J 4 HOH A 75 575 33 HOH HOH . J 4 HOH A 76 576 2 HOH HOH . J 4 HOH A 77 577 3 HOH HOH . J 4 HOH A 78 578 27 HOH HOH . J 4 HOH A 79 579 85 HOH HOH . J 4 HOH A 80 580 35 HOH HOH . J 4 HOH A 81 581 99 HOH HOH . J 4 HOH A 82 582 136 HOH HOH . J 4 HOH A 83 583 114 HOH HOH . J 4 HOH A 84 584 22 HOH HOH . J 4 HOH A 85 585 48 HOH HOH . J 4 HOH A 86 586 86 HOH HOH . J 4 HOH A 87 587 26 HOH HOH . J 4 HOH A 88 588 75 HOH HOH . J 4 HOH A 89 589 10 HOH HOH . J 4 HOH A 90 590 18 HOH HOH . J 4 HOH A 91 591 45 HOH HOH . J 4 HOH A 92 592 9 HOH HOH . J 4 HOH A 93 593 28 HOH HOH . J 4 HOH A 94 594 81 HOH HOH . J 4 HOH A 95 595 125 HOH HOH . J 4 HOH A 96 596 73 HOH HOH . J 4 HOH A 97 597 141 HOH HOH . J 4 HOH A 98 598 119 HOH HOH . J 4 HOH A 99 599 121 HOH HOH . J 4 HOH A 100 600 100 HOH HOH . J 4 HOH A 101 601 14 HOH HOH . J 4 HOH A 102 602 53 HOH HOH . J 4 HOH A 103 603 84 HOH HOH . J 4 HOH A 104 604 72 HOH HOH . J 4 HOH A 105 605 51 HOH HOH . J 4 HOH A 106 606 41 HOH HOH . J 4 HOH A 107 607 147 HOH HOH . J 4 HOH A 108 608 79 HOH HOH . J 4 HOH A 109 609 23 HOH HOH . J 4 HOH A 110 610 98 HOH HOH . J 4 HOH A 111 611 118 HOH HOH . J 4 HOH A 112 612 31 HOH HOH . J 4 HOH A 113 613 148 HOH HOH . J 4 HOH A 114 614 91 HOH HOH . J 4 HOH A 115 615 61 HOH HOH . J 4 HOH A 116 616 140 HOH HOH . J 4 HOH A 117 617 69 HOH HOH . J 4 HOH A 118 618 149 HOH HOH . J 4 HOH A 119 619 101 HOH HOH . J 4 HOH A 120 620 138 HOH HOH . J 4 HOH A 121 621 97 HOH HOH . J 4 HOH A 122 622 142 HOH HOH . J 4 HOH A 123 623 115 HOH HOH . J 4 HOH A 124 624 145 HOH HOH . J 4 HOH A 125 625 71 HOH HOH . J 4 HOH A 126 626 88 HOH HOH . J 4 HOH A 127 627 111 HOH HOH . J 4 HOH A 128 628 87 HOH HOH . J 4 HOH A 129 629 34 HOH HOH . J 4 HOH A 130 630 128 HOH HOH . J 4 HOH A 131 631 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O8W . . . B 2 -3.101 -1.674 26.068 1 61.1 ? C4 O8W 401 A 1 HETATM 2 C C5 O8W . . . B 2 -2.482 -1.87 27.292 1 62.04 ? C5 O8W 401 A 1 HETATM 3 C C6 O8W . . . B 2 -3.42 -1.558 21.638 1 52.44 ? C6 O8W 401 A 1 HETATM 4 N N1 O8W . . . B 2 -2.839 -2.117 22.682 1 54.63 ? N1 O8W 401 A 1 HETATM 5 C C7 O8W . . . B 2 -3.61 -0.068 23.261 1 50.59 ? C7 O8W 401 A 1 HETATM 6 C C8 O8W . . . B 2 -3.913 -0.267 21.923 1 48.01 ? C8 O8W 401 A 1 HETATM 7 N N2 O8W . . . B 2 -4.831 0.369 19.81 1 38.24 ? N2 O8W 401 A 1 HETATM 8 C C9 O8W . . . B 2 -4.514 0.76 21.045 1 44.44 ? C9 O8W 401 A 1 HETATM 9 C C10 O8W . . . B 2 -5.267 1.305 18.783 1 40.07 ? C10 O8W 401 A 1 HETATM 10 C C11 O8W . . . B 2 -4.137 1.935 18.003 1 34.35 ? C11 O8W 401 A 1 HETATM 11 C C12 O8W . . . B 2 -2.826 1.876 18.45 1 32.42 ? C12 O8W 401 A 1 HETATM 12 N N3 O8W . . . B 2 -1.081 4.406 14.76 1 28.3 ? N3 O8W 401 A 1 HETATM 13 C C13 O8W . . . B 2 -1.795 2.408 17.706 1 31.95 ? C13 O8W 401 A 1 HETATM 14 C C14 O8W . . . B 2 -2.043 3.007 16.484 1 28.9 ? C14 O8W 401 A 1 HETATM 15 C C15 O8W . . . B 2 -3.362 3.092 16.044 1 30.58 ? C15 O8W 401 A 1 HETATM 16 N N4 O8W . . . B 2 -0.129 7.115 14.8 1 37.81 ? N4 O8W 401 A 1 HETATM 17 O O2 O8W . . . B 2 -4.658 1.918 21.449 1 41.89 ? O2 O8W 401 A 1 HETATM 18 N N5 O8W . . . B 2 -3.854 0.992 24.043 1 53.46 ? N5 O8W 401 A 1 HETATM 19 N N O8W . . . B 2 -2.955 -1.182 23.68 1 55.09 ? N O8W 401 A 1 HETATM 20 C C3 O8W . . . B 2 -2.326 -1.439 24.935 1 57.11 ? C3 O8W 401 A 1 HETATM 21 C C2 O8W . . . B 2 -0.941 -1.405 25.031 1 59.58 ? C2 O8W 401 A 1 HETATM 22 C C1 O8W . . . B 2 -0.336 -1.6 26.262 1 63.32 ? C1 O8W 401 A 1 HETATM 23 C C O8W . . . B 2 -1.104 -1.834 27.391 1 62.38 ? C O8W 401 A 1 HETATM 24 C C16 O8W . . . B 2 -4.39 2.559 16.797 1 33.45 ? C16 O8W 401 A 1 HETATM 25 C C17 O8W . . . B 2 -0.873 3.451 15.675 1 29.54 ? C17 O8W 401 A 1 HETATM 26 O O1 O8W . . . B 2 0.229 2.945 15.841 1 31.4 ? O1 O8W 401 A 1 HETATM 27 C C18 O8W . . . B 2 -0.034 4.857 13.875 1 31.28 ? C18 O8W 401 A 1 HETATM 28 C C19 O8W . . . B 2 -0.174 6.38 13.684 1 35.06 ? C19 O8W 401 A 1 HETATM 29 O O O8W . . . B 2 -0.351 6.867 12.579 1 33.12 ? O O8W 401 A 1 HETATM 30 C C20 O8W . . . B 2 -0.639 8.488 14.84 1 42.19 ? C20 O8W 401 A 1 HETATM 31 C C23 O8W . . . B 2 -1.336 8.801 16.159 1 39.26 ? C23 O8W 401 A 1 HETATM 32 C C21 O8W . . . B 2 0.587 9.363 14.566 1 41.18 ? C21 O8W 401 A 1 HETATM 33 C C22 O8W . . . B 2 1.531 9.426 15.693 1 41.07 ? C22 O8W 401 A 1 HETATM 34 C C24 O8W . . . B 2 -0.018 3.991 12.606 1 34.48 ? C24 O8W 401 A 1 HETATM 35 C C25 O8W . . . B 2 1.243 4.197 11.79 1 37.18 ? C25 O8W 401 A 1 HETATM 36 C C26 O8W . . . B 2 2.401 3.196 11.924 1 36.8 ? C26 O8W 401 A 1 HETATM 37 C C30 O8W . . . B 2 2.596 2.653 13.336 1 36.76 ? C30 O8W 401 A 1 HETATM 38 C C31 O8W . . . B 2 3.76 1.669 13.48 1 33.71 ? C31 O8W 401 A 1 HETATM 39 C C29 O8W . . . B 2 4.766 1.793 12.362 1 35.71 ? C29 O8W 401 A 1 HETATM 40 C C28 O8W . . . B 2 4.97 3.232 11.97 1 36.15 ? C28 O8W 401 A 1 HETATM 41 C C27 O8W . . . B 2 3.693 3.847 11.417 1 35.29 ? C27 O8W 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #