data_6Y4U # _model_server_result.job_id n4cPXEm8u7HSeapn_HUhkg _model_server_result.datetime_utc '2024-11-06 21:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y4U # _exptl.entry_id 6Y4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.741 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-oxidanylidene-1-(pentan-3-ylamino)butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y4U _cell.length_a 66.019 _cell.length_b 74.919 _cell.length_c 77.799 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H44 N6 O3' _chem_comp.formula_weight 572.741 _chem_comp.id O98 _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-oxidanylidene-1-(pentan-3-ylamino)butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 O98 sing 246 n n C32 C27 O98 sing 247 n n C31 C30 O98 sing 248 n n C26 C25 O98 sing 249 n n C26 C27 O98 sing 250 n n C30 C29 O98 sing 251 n n C25 C18 O98 sing 252 n n C27 C28 O98 sing 253 n n O C19 O98 doub 254 n n C28 C29 O98 sing 255 n n C19 C18 O98 sing 256 n n C19 N4 O98 sing 257 n n C22 C21 O98 sing 258 n n C18 N3 O98 sing 259 n n N3 C17 O98 sing 260 n n N4 C20 O98 sing 261 n n C20 C21 O98 sing 262 n n C20 C23 O98 sing 263 n n C17 O1 O98 doub 264 n n C17 C14 O98 sing 265 n n C13 C14 O98 doub 266 n y C13 C12 O98 sing 267 n y C23 C24 O98 sing 268 n n C14 C15 O98 sing 269 n y C12 C11 O98 doub 270 n y C15 C16 O98 doub 271 n y C11 C16 O98 sing 272 n y C11 C10 O98 sing 273 n n C10 N2 O98 sing 274 n n N2 C9 O98 sing 275 n n C9 O2 O98 doub 276 n n C9 C8 O98 sing 277 n n C6 C8 O98 sing 278 n y C6 N1 O98 doub 279 n y C8 C7 O98 doub 280 n y N1 N O98 sing 281 n y C7 N O98 sing 282 n y C7 N5 O98 sing 283 n n N C3 O98 sing 284 n n C3 C4 O98 doub 285 n y C3 C2 O98 sing 286 n y C4 C5 O98 sing 287 n y C2 C1 O98 doub 288 n y C5 C O98 doub 289 n y C1 C O98 sing 290 n y C4 H1 O98 sing 291 n n C5 H2 O98 sing 292 n n C6 H3 O98 sing 293 n n N2 H4 O98 sing 294 n n C10 H5 O98 sing 295 n n C10 H6 O98 sing 296 n n C12 H7 O98 sing 297 n n N3 H8 O98 sing 298 n n C13 H9 O98 sing 299 n n C15 H10 O98 sing 300 n n N4 H11 O98 sing 301 n n N5 H12 O98 sing 302 n n N5 H13 O98 sing 303 n n C2 H14 O98 sing 304 n n C1 H15 O98 sing 305 n n C H16 O98 sing 306 n n C16 H17 O98 sing 307 n n C18 H18 O98 sing 308 n n C20 H19 O98 sing 309 n n C23 H20 O98 sing 310 n n C23 H21 O98 sing 311 n n C24 H22 O98 sing 312 n n C24 H23 O98 sing 313 n n C24 H24 O98 sing 314 n n C21 H25 O98 sing 315 n n C21 H26 O98 sing 316 n n C22 H27 O98 sing 317 n n C22 H28 O98 sing 318 n n C22 H29 O98 sing 319 n n C25 H30 O98 sing 320 n n C25 H31 O98 sing 321 n n C26 H32 O98 sing 322 n n C26 H33 O98 sing 323 n n C27 H34 O98 sing 324 n n C32 H35 O98 sing 325 n n C32 H36 O98 sing 326 n n C31 H37 O98 sing 327 n n C31 H38 O98 sing 328 n n C30 H39 O98 sing 329 n n C30 H40 O98 sing 330 n n C29 H41 O98 sing 331 n n C29 H42 O98 sing 332 n n C28 H43 O98 sing 333 n n C28 H44 O98 sing 334 n n # _atom_sites.entry_id 6Y4U _atom_sites.fract_transf_matrix[1][1] 0.015147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O98 A 1 401 1 O98 XXX . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 4 HOH A 1 501 131 HOH HOH . G 4 HOH A 2 502 134 HOH HOH . G 4 HOH A 3 503 50 HOH HOH . G 4 HOH A 4 504 141 HOH HOH . G 4 HOH A 5 505 30 HOH HOH . G 4 HOH A 6 506 108 HOH HOH . G 4 HOH A 7 507 29 HOH HOH . G 4 HOH A 8 508 52 HOH HOH . G 4 HOH A 9 509 99 HOH HOH . G 4 HOH A 10 510 121 HOH HOH . G 4 HOH A 11 511 128 HOH HOH . G 4 HOH A 12 512 111 HOH HOH . G 4 HOH A 13 513 60 HOH HOH . G 4 HOH A 14 514 130 HOH HOH . G 4 HOH A 15 515 44 HOH HOH . G 4 HOH A 16 516 67 HOH HOH . G 4 HOH A 17 517 55 HOH HOH . G 4 HOH A 18 518 27 HOH HOH . G 4 HOH A 19 519 21 HOH HOH . G 4 HOH A 20 520 8 HOH HOH . G 4 HOH A 21 521 35 HOH HOH . G 4 HOH A 22 522 54 HOH HOH . G 4 HOH A 23 523 15 HOH HOH . G 4 HOH A 24 524 2 HOH HOH . G 4 HOH A 25 525 126 HOH HOH . G 4 HOH A 26 526 114 HOH HOH . G 4 HOH A 27 527 13 HOH HOH . G 4 HOH A 28 528 129 HOH HOH . G 4 HOH A 29 529 1 HOH HOH . G 4 HOH A 30 530 105 HOH HOH . G 4 HOH A 31 531 22 HOH HOH . G 4 HOH A 32 532 118 HOH HOH . G 4 HOH A 33 533 87 HOH HOH . G 4 HOH A 34 534 65 HOH HOH . G 4 HOH A 35 535 64 HOH HOH . G 4 HOH A 36 536 34 HOH HOH . G 4 HOH A 37 537 72 HOH HOH . G 4 HOH A 38 538 127 HOH HOH . G 4 HOH A 39 539 25 HOH HOH . G 4 HOH A 40 540 26 HOH HOH . G 4 HOH A 41 541 103 HOH HOH . G 4 HOH A 42 542 133 HOH HOH . G 4 HOH A 43 543 123 HOH HOH . G 4 HOH A 44 544 62 HOH HOH . G 4 HOH A 45 545 38 HOH HOH . G 4 HOH A 46 546 102 HOH HOH . G 4 HOH A 47 547 9 HOH HOH . G 4 HOH A 48 548 98 HOH HOH . G 4 HOH A 49 549 113 HOH HOH . G 4 HOH A 50 550 71 HOH HOH . G 4 HOH A 51 551 59 HOH HOH . G 4 HOH A 52 552 139 HOH HOH . G 4 HOH A 53 553 140 HOH HOH . G 4 HOH A 54 554 75 HOH HOH . G 4 HOH A 55 555 66 HOH HOH . G 4 HOH A 56 556 112 HOH HOH . G 4 HOH A 57 557 78 HOH HOH . G 4 HOH A 58 558 120 HOH HOH . G 4 HOH A 59 559 10 HOH HOH . G 4 HOH A 60 560 137 HOH HOH . G 4 HOH A 61 561 80 HOH HOH . G 4 HOH A 62 562 19 HOH HOH . G 4 HOH A 63 563 40 HOH HOH . G 4 HOH A 64 564 74 HOH HOH . G 4 HOH A 65 565 45 HOH HOH . G 4 HOH A 66 566 37 HOH HOH . G 4 HOH A 67 567 23 HOH HOH . G 4 HOH A 68 568 5 HOH HOH . G 4 HOH A 69 569 136 HOH HOH . G 4 HOH A 70 570 79 HOH HOH . G 4 HOH A 71 571 49 HOH HOH . G 4 HOH A 72 572 58 HOH HOH . G 4 HOH A 73 573 90 HOH HOH . G 4 HOH A 74 574 70 HOH HOH . G 4 HOH A 75 575 11 HOH HOH . G 4 HOH A 76 576 46 HOH HOH . G 4 HOH A 77 577 53 HOH HOH . G 4 HOH A 78 578 43 HOH HOH . G 4 HOH A 79 579 41 HOH HOH . G 4 HOH A 80 580 42 HOH HOH . G 4 HOH A 81 581 106 HOH HOH . G 4 HOH A 82 582 57 HOH HOH . G 4 HOH A 83 583 4 HOH HOH . G 4 HOH A 84 584 7 HOH HOH . G 4 HOH A 85 585 117 HOH HOH . G 4 HOH A 86 586 14 HOH HOH . G 4 HOH A 87 587 28 HOH HOH . G 4 HOH A 88 588 20 HOH HOH . G 4 HOH A 89 589 39 HOH HOH . G 4 HOH A 90 590 77 HOH HOH . G 4 HOH A 91 591 3 HOH HOH . G 4 HOH A 92 592 116 HOH HOH . G 4 HOH A 93 593 56 HOH HOH . G 4 HOH A 94 594 12 HOH HOH . G 4 HOH A 95 595 122 HOH HOH . G 4 HOH A 96 596 125 HOH HOH . G 4 HOH A 97 597 31 HOH HOH . G 4 HOH A 98 598 81 HOH HOH . G 4 HOH A 99 599 51 HOH HOH . G 4 HOH A 100 600 142 HOH HOH . G 4 HOH A 101 601 86 HOH HOH . G 4 HOH A 102 602 16 HOH HOH . G 4 HOH A 103 603 61 HOH HOH . G 4 HOH A 104 604 138 HOH HOH . G 4 HOH A 105 605 100 HOH HOH . G 4 HOH A 106 606 89 HOH HOH . G 4 HOH A 107 607 84 HOH HOH . G 4 HOH A 108 608 132 HOH HOH . G 4 HOH A 109 609 110 HOH HOH . G 4 HOH A 110 610 73 HOH HOH . G 4 HOH A 111 611 88 HOH HOH . G 4 HOH A 112 612 85 HOH HOH . G 4 HOH A 113 613 17 HOH HOH . G 4 HOH A 114 614 143 HOH HOH . G 4 HOH A 115 615 47 HOH HOH . G 4 HOH A 116 616 124 HOH HOH . G 4 HOH A 117 617 107 HOH HOH . G 4 HOH A 118 618 68 HOH HOH . G 4 HOH A 119 619 101 HOH HOH . G 4 HOH A 120 620 18 HOH HOH . G 4 HOH A 121 621 135 HOH HOH . G 4 HOH A 122 622 69 HOH HOH . G 4 HOH A 123 623 119 HOH HOH . G 4 HOH A 124 624 97 HOH HOH . G 4 HOH A 125 625 94 HOH HOH . G 4 HOH A 126 626 91 HOH HOH . G 4 HOH A 127 627 109 HOH HOH . G 4 HOH A 128 628 115 HOH HOH . G 4 HOH A 129 629 63 HOH HOH . G 4 HOH A 130 630 33 HOH HOH . G 4 HOH A 131 631 92 HOH HOH . G 4 HOH A 132 632 82 HOH HOH . G 4 HOH A 133 633 104 HOH HOH . G 4 HOH A 134 634 144 HOH HOH . G 4 HOH A 135 635 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O98 . . . B 2 -1.079 -1.693 25.006 1 64.54 ? C4 O98 401 A 1 HETATM 2 C C5 O98 . . . B 2 -0.436 -1.937 26.208 1 67.2 ? C5 O98 401 A 1 HETATM 3 C C6 O98 . . . B 2 -3.641 -1.622 21.72 1 50.3 ? C6 O98 401 A 1 HETATM 4 N N1 O98 . . . B 2 -3.106 -2.211 22.772 1 53.82 ? N1 O98 401 A 1 HETATM 5 C C7 O98 . . . B 2 -3.676 -0.089 23.311 1 48.9 ? C7 O98 401 A 1 HETATM 6 C C8 O98 . . . B 2 -4.011 -0.288 21.979 1 45.11 ? C8 O98 401 A 1 HETATM 7 N N2 O98 . . . B 2 -4.832 0.35 19.839 1 35.45 ? N2 O98 401 A 1 HETATM 8 C C9 O98 . . . B 2 -4.518 0.753 21.068 1 39.13 ? C9 O98 401 A 1 HETATM 9 C C10 O98 . . . B 2 -5.246 1.273 18.792 1 38.24 ? C10 O98 401 A 1 HETATM 10 C C11 O98 . . . B 2 -4.102 1.876 18.006 1 34 ? C11 O98 401 A 1 HETATM 11 C C12 O98 . . . B 2 -4.349 2.505 16.807 1 31.43 ? C12 O98 401 A 1 HETATM 12 N N3 O98 . . . B 2 -1.017 4.322 14.76 1 28.83 ? N3 O98 401 A 1 HETATM 13 C C13 O98 . . . B 2 -3.32 3.036 16.053 1 33.2 ? C13 O98 401 A 1 HETATM 14 C C14 O98 . . . B 2 -1.997 2.947 16.496 1 30.79 ? C14 O98 401 A 1 HETATM 15 C C15 O98 . . . B 2 -1.751 2.324 17.709 1 31.62 ? C15 O98 401 A 1 HETATM 16 N N4 O98 . . . B 2 0.176 7.105 14.833 1 37.64 ? N4 O98 401 A 1 HETATM 17 O O2 O98 . . . B 2 -4.57 1.931 21.429 1 39.36 ? O2 O98 401 A 1 HETATM 18 N N5 O98 . . . B 2 -3.829 1.003 24.067 1 53.02 ? N5 O98 401 A 1 HETATM 19 N N O98 . . . B 2 -3.12 -1.249 23.748 1 55.1 ? N O98 401 A 1 HETATM 20 C C3 O98 . . . B 2 -2.459 -1.527 24.985 1 61.71 ? C3 O98 401 A 1 HETATM 21 C C2 O98 . . . B 2 -3.189 -1.606 26.167 1 64.61 ? C2 O98 401 A 1 HETATM 22 C C1 O98 . . . B 2 -2.531 -1.843 27.363 1 65.63 ? C1 O98 401 A 1 HETATM 23 C C O98 . . . B 2 -1.159 -2.009 27.385 1 64.1 ? C O98 401 A 1 HETATM 24 C C16 O98 . . . B 2 -2.786 1.799 18.453 1 34.68 ? C16 O98 401 A 1 HETATM 25 C C17 O98 . . . B 2 -0.809 3.398 15.705 1 31.91 ? C17 O98 401 A 1 HETATM 26 O O1 O98 . . . B 2 0.297 2.898 15.914 1 31.38 ? O1 O98 401 A 1 HETATM 27 C C18 O98 . . . B 2 0.037 4.856 13.917 1 29.51 ? C18 O98 401 A 1 HETATM 28 C C19 O98 . . . B 2 -0.086 6.359 13.759 1 31.6 ? C19 O98 401 A 1 HETATM 29 O O O98 . . . B 2 -0.413 6.82 12.682 1 35.66 ? O O98 401 A 1 HETATM 30 C C20 O98 . . . B 2 0.002 8.56 14.874 1 43.8 ? C20 O98 401 A 1 HETATM 31 C C23 O98 . . . B 2 -0.829 8.983 16.084 1 45.44 ? C23 O98 401 A 1 HETATM 32 C C24 O98 . . . B 2 -2.001 8.144 16.364 1 44.52 ? C24 O98 401 A 1 HETATM 33 C C21 O98 . . . B 2 1.352 9.269 15.038 1 43.02 ? C21 O98 401 A 1 HETATM 34 C C22 O98 . . . B 2 2.207 9.185 13.811 1 45.28 ? C22 O98 401 A 1 HETATM 35 C C25 O98 . . . B 2 -0.036 4.275 12.52 1 33.38 ? C25 O98 401 A 1 HETATM 36 C C26 O98 . . . B 2 0.886 3.195 12.046 1 35.6 ? C26 O98 401 A 1 HETATM 37 C C27 O98 . . . B 2 2.35 3.246 12.551 1 32.59 ? C27 O98 401 A 1 HETATM 38 C C32 O98 . . . B 2 3.312 3.627 11.423 1 35.5 ? C32 O98 401 A 1 HETATM 39 C C31 O98 . . . B 2 4.778 3.45 11.797 1 33.94 ? C31 O98 401 A 1 HETATM 40 C C30 O98 . . . B 2 5.053 2.046 12.277 1 32.17 ? C30 O98 401 A 1 HETATM 41 C C29 O98 . . . B 2 4.186 1.716 13.463 1 32.96 ? C29 O98 401 A 1 HETATM 42 C C28 O98 . . . B 2 2.711 1.877 13.119 1 32.28 ? C28 O98 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #