data_6Y4W # _model_server_result.job_id '_Op1M2mNwEAuiW6dzfeBcg' _model_server_result.datetime_utc '2024-11-25 07:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y4W # _exptl.entry_id 6Y4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.752 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-(cyclohexylamino)-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y4W _cell.length_a 66.059 _cell.length_b 74.98 _cell.length_c 77.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H44 N6 O3' _chem_comp.formula_weight 584.752 _chem_comp.id O8T _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-(cyclohexylamino)-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C30 O8T sing 246 n n C29 C28 O8T sing 247 n n C27 C28 O8T sing 248 n n C27 C26 O8T sing 249 n n C30 C31 O8T sing 250 n n C31 C32 O8T sing 251 n n C28 C33 O8T sing 252 n n O C19 O8T doub 253 n n C26 C18 O8T sing 254 n n C33 C32 O8T sing 255 n n C19 C18 O8T sing 256 n n C19 N4 O8T sing 257 n n C18 N3 O8T sing 258 n n N4 C20 O8T sing 259 n n C20 C21 O8T sing 260 n n C20 C25 O8T sing 261 n n N3 C17 O8T sing 262 n n C21 C22 O8T sing 263 n n C23 C24 O8T sing 264 n n C23 C22 O8T sing 265 n n C24 C25 O8T sing 266 n n C17 O1 O8T doub 267 n n C17 C14 O8T sing 268 n n C15 C14 O8T doub 269 n y C15 C16 O8T sing 270 n y C14 C13 O8T sing 271 n y C16 C11 O8T doub 272 n y C13 C12 O8T doub 273 n y C11 C12 O8T sing 274 n y C11 C10 O8T sing 275 n n C10 N2 O8T sing 276 n n N2 C9 O8T sing 277 n n C9 O2 O8T doub 278 n n C9 C8 O8T sing 279 n n C6 C8 O8T sing 280 n y C6 N1 O8T doub 281 n y C8 C7 O8T doub 282 n y N1 N O8T sing 283 n y C7 N O8T sing 284 n y C7 N5 O8T sing 285 n n N C3 O8T sing 286 n n C2 C3 O8T doub 287 n y C2 C1 O8T sing 288 n y C3 C4 O8T sing 289 n y C1 C O8T doub 290 n y C4 C5 O8T doub 291 n y C C5 O8T sing 292 n y C4 H1 O8T sing 293 n n C5 H2 O8T sing 294 n n C6 H3 O8T sing 295 n n N2 H4 O8T sing 296 n n C10 H5 O8T sing 297 n n C10 H6 O8T sing 298 n n C12 H7 O8T sing 299 n n N3 H8 O8T sing 300 n n C13 H9 O8T sing 301 n n C15 H10 O8T sing 302 n n N4 H11 O8T sing 303 n n N5 H12 O8T sing 304 n n N5 H13 O8T sing 305 n n C2 H14 O8T sing 306 n n C1 H15 O8T sing 307 n n C H16 O8T sing 308 n n C16 H17 O8T sing 309 n n C18 H18 O8T sing 310 n n C26 H19 O8T sing 311 n n C26 H20 O8T sing 312 n n C27 H21 O8T sing 313 n n C27 H22 O8T sing 314 n n C28 H23 O8T sing 315 n n C33 H24 O8T sing 316 n n C33 H25 O8T sing 317 n n C32 H26 O8T sing 318 n n C32 H27 O8T sing 319 n n C31 H28 O8T sing 320 n n C31 H29 O8T sing 321 n n C30 H30 O8T sing 322 n n C30 H31 O8T sing 323 n n C29 H32 O8T sing 324 n n C29 H33 O8T sing 325 n n C20 H34 O8T sing 326 n n C25 H35 O8T sing 327 n n C25 H36 O8T sing 328 n n C24 H37 O8T sing 329 n n C24 H38 O8T sing 330 n n C23 H39 O8T sing 331 n n C23 H40 O8T sing 332 n n C22 H41 O8T sing 333 n n C22 H42 O8T sing 334 n n C21 H43 O8T sing 335 n n C21 H44 O8T sing 336 n n # _atom_sites.entry_id 6Y4W _atom_sites.fract_transf_matrix[1][1] 0.015138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O8T A 1 401 1 O8T XXX . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 4 HOH A 1 501 136 HOH HOH . H 4 HOH A 2 502 144 HOH HOH . H 4 HOH A 3 503 130 HOH HOH . H 4 HOH A 4 504 167 HOH HOH . H 4 HOH A 5 505 146 HOH HOH . H 4 HOH A 6 506 72 HOH HOH . H 4 HOH A 7 507 135 HOH HOH . H 4 HOH A 8 508 64 HOH HOH . H 4 HOH A 9 509 113 HOH HOH . H 4 HOH A 10 510 150 HOH HOH . H 4 HOH A 11 511 134 HOH HOH . H 4 HOH A 12 512 162 HOH HOH . H 4 HOH A 13 513 48 HOH HOH . H 4 HOH A 14 514 154 HOH HOH . H 4 HOH A 15 515 106 HOH HOH . H 4 HOH A 16 516 16 HOH HOH . H 4 HOH A 17 517 20 HOH HOH . H 4 HOH A 18 518 60 HOH HOH . H 4 HOH A 19 519 5 HOH HOH . H 4 HOH A 20 520 43 HOH HOH . H 4 HOH A 21 521 114 HOH HOH . H 4 HOH A 22 522 95 HOH HOH . H 4 HOH A 23 523 19 HOH HOH . H 4 HOH A 24 524 30 HOH HOH . H 4 HOH A 25 525 54 HOH HOH . H 4 HOH A 26 526 127 HOH HOH . H 4 HOH A 27 527 121 HOH HOH . H 4 HOH A 28 528 118 HOH HOH . H 4 HOH A 29 529 138 HOH HOH . H 4 HOH A 30 530 22 HOH HOH . H 4 HOH A 31 531 66 HOH HOH . H 4 HOH A 32 532 17 HOH HOH . H 4 HOH A 33 533 41 HOH HOH . H 4 HOH A 34 534 47 HOH HOH . H 4 HOH A 35 535 122 HOH HOH . H 4 HOH A 36 536 99 HOH HOH . H 4 HOH A 37 537 6 HOH HOH . H 4 HOH A 38 538 33 HOH HOH . H 4 HOH A 39 539 36 HOH HOH . H 4 HOH A 40 540 70 HOH HOH . H 4 HOH A 41 541 12 HOH HOH . H 4 HOH A 42 542 27 HOH HOH . H 4 HOH A 43 543 56 HOH HOH . H 4 HOH A 44 544 52 HOH HOH . H 4 HOH A 45 545 152 HOH HOH . H 4 HOH A 46 546 40 HOH HOH . H 4 HOH A 47 547 111 HOH HOH . H 4 HOH A 48 548 32 HOH HOH . H 4 HOH A 49 549 94 HOH HOH . H 4 HOH A 50 550 116 HOH HOH . H 4 HOH A 51 551 89 HOH HOH . H 4 HOH A 52 552 65 HOH HOH . H 4 HOH A 53 553 148 HOH HOH . H 4 HOH A 54 554 58 HOH HOH . H 4 HOH A 55 555 62 HOH HOH . H 4 HOH A 56 556 34 HOH HOH . H 4 HOH A 57 557 2 HOH HOH . H 4 HOH A 58 558 79 HOH HOH . H 4 HOH A 59 559 110 HOH HOH . H 4 HOH A 60 560 28 HOH HOH . H 4 HOH A 61 561 9 HOH HOH . H 4 HOH A 62 562 97 HOH HOH . H 4 HOH A 63 563 133 HOH HOH . H 4 HOH A 64 564 23 HOH HOH . H 4 HOH A 65 565 55 HOH HOH . H 4 HOH A 66 566 164 HOH HOH . H 4 HOH A 67 567 13 HOH HOH . H 4 HOH A 68 568 77 HOH HOH . H 4 HOH A 69 569 153 HOH HOH . H 4 HOH A 70 570 140 HOH HOH . H 4 HOH A 71 571 85 HOH HOH . H 4 HOH A 72 572 51 HOH HOH . H 4 HOH A 73 573 8 HOH HOH . H 4 HOH A 74 574 117 HOH HOH . H 4 HOH A 75 575 45 HOH HOH . H 4 HOH A 76 576 115 HOH HOH . H 4 HOH A 77 577 46 HOH HOH . H 4 HOH A 78 578 61 HOH HOH . H 4 HOH A 79 579 160 HOH HOH . H 4 HOH A 80 580 69 HOH HOH . H 4 HOH A 81 581 37 HOH HOH . H 4 HOH A 82 582 49 HOH HOH . H 4 HOH A 83 583 84 HOH HOH . H 4 HOH A 84 584 83 HOH HOH . H 4 HOH A 85 585 71 HOH HOH . H 4 HOH A 86 586 38 HOH HOH . H 4 HOH A 87 587 26 HOH HOH . H 4 HOH A 88 588 42 HOH HOH . H 4 HOH A 89 589 126 HOH HOH . H 4 HOH A 90 590 50 HOH HOH . H 4 HOH A 91 591 78 HOH HOH . H 4 HOH A 92 592 149 HOH HOH . H 4 HOH A 93 593 10 HOH HOH . H 4 HOH A 94 594 80 HOH HOH . H 4 HOH A 95 595 35 HOH HOH . H 4 HOH A 96 596 98 HOH HOH . H 4 HOH A 97 597 74 HOH HOH . H 4 HOH A 98 598 3 HOH HOH . H 4 HOH A 99 599 107 HOH HOH . H 4 HOH A 100 600 29 HOH HOH . H 4 HOH A 101 601 14 HOH HOH . H 4 HOH A 102 602 141 HOH HOH . H 4 HOH A 103 603 24 HOH HOH . H 4 HOH A 104 604 57 HOH HOH . H 4 HOH A 105 605 1 HOH HOH . H 4 HOH A 106 606 25 HOH HOH . H 4 HOH A 107 607 31 HOH HOH . H 4 HOH A 108 608 67 HOH HOH . H 4 HOH A 109 609 90 HOH HOH . H 4 HOH A 110 610 100 HOH HOH . H 4 HOH A 111 611 68 HOH HOH . H 4 HOH A 112 612 7 HOH HOH . H 4 HOH A 113 613 139 HOH HOH . H 4 HOH A 114 614 15 HOH HOH . H 4 HOH A 115 615 63 HOH HOH . H 4 HOH A 116 616 161 HOH HOH . H 4 HOH A 117 617 158 HOH HOH . H 4 HOH A 118 618 137 HOH HOH . H 4 HOH A 119 619 91 HOH HOH . H 4 HOH A 120 620 101 HOH HOH . H 4 HOH A 121 621 81 HOH HOH . H 4 HOH A 122 622 132 HOH HOH . H 4 HOH A 123 623 87 HOH HOH . H 4 HOH A 124 624 131 HOH HOH . H 4 HOH A 125 625 128 HOH HOH . H 4 HOH A 126 626 82 HOH HOH . H 4 HOH A 127 627 109 HOH HOH . H 4 HOH A 128 628 76 HOH HOH . H 4 HOH A 129 629 18 HOH HOH . H 4 HOH A 130 630 157 HOH HOH . H 4 HOH A 131 631 75 HOH HOH . H 4 HOH A 132 632 105 HOH HOH . H 4 HOH A 133 633 125 HOH HOH . H 4 HOH A 134 634 129 HOH HOH . H 4 HOH A 135 635 151 HOH HOH . H 4 HOH A 136 636 165 HOH HOH . H 4 HOH A 137 637 155 HOH HOH . H 4 HOH A 138 638 143 HOH HOH . H 4 HOH A 139 639 39 HOH HOH . H 4 HOH A 140 640 108 HOH HOH . H 4 HOH A 141 641 120 HOH HOH . H 4 HOH A 142 642 104 HOH HOH . H 4 HOH A 143 643 119 HOH HOH . H 4 HOH A 144 644 123 HOH HOH . H 4 HOH A 145 645 166 HOH HOH . H 4 HOH A 146 646 163 HOH HOH . H 4 HOH A 147 647 92 HOH HOH . H 4 HOH A 148 648 156 HOH HOH . H 4 HOH A 149 649 59 HOH HOH . H 4 HOH A 150 650 102 HOH HOH . H 4 HOH A 151 651 147 HOH HOH . H 4 HOH A 152 652 124 HOH HOH . H 4 HOH A 153 653 112 HOH HOH . H 4 HOH A 154 654 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O8T . . . B 2 -3.173 -1.687 26.105 1 66.78 ? C4 O8T 401 A 1 HETATM 2 C C5 O8T . . . B 2 -2.402 -2.002 27.213 1 67.43 ? C5 O8T 401 A 1 HETATM 3 C C6 O8T . . . B 2 -4.021 -1.551 21.757 1 46.62 ? C6 O8T 401 A 1 HETATM 4 N N1 O8T . . . B 2 -3.466 -2.144 22.791 1 54.14 ? N1 O8T 401 A 1 HETATM 5 C C7 O8T . . . B 2 -3.831 0.029 23.29 1 47.79 ? C7 O8T 401 A 1 HETATM 6 C C8 O8T . . . B 2 -4.259 -0.183 21.986 1 43.7 ? C8 O8T 401 A 1 HETATM 7 N N2 O8T . . . B 2 -4.984 0.407 19.814 1 34.14 ? N2 O8T 401 A 1 HETATM 8 C C9 O8T . . . B 2 -4.677 0.853 21.037 1 36.76 ? C9 O8T 401 A 1 HETATM 9 C C10 O8T . . . B 2 -5.394 1.29 18.732 1 37.67 ? C10 O8T 401 A 1 HETATM 10 C C11 O8T . . . B 2 -4.23 1.894 17.975 1 33.73 ? C11 O8T 401 A 1 HETATM 11 C C12 O8T . . . B 2 -2.923 1.792 18.44 1 34.21 ? C12 O8T 401 A 1 HETATM 12 N N3 O8T . . . B 2 -1.094 4.301 14.769 1 28.63 ? N3 O8T 401 A 1 HETATM 13 C C13 O8T . . . B 2 -1.874 2.343 17.734 1 32.17 ? C13 O8T 401 A 1 HETATM 14 C C14 O8T . . . B 2 -2.091 2.951 16.506 1 30.15 ? C14 O8T 401 A 1 HETATM 15 C C15 O8T . . . B 2 -3.404 3.107 16.067 1 31.72 ? C15 O8T 401 A 1 HETATM 16 N N4 O8T . . . B 2 0.183 6.967 14.705 1 34.13 ? N4 O8T 401 A 1 HETATM 17 O O2 O8T . . . B 2 -4.66 2.055 21.356 1 36.2 ? O2 O8T 401 A 1 HETATM 18 N N5 O8T . . . B 2 -3.866 1.146 24.035 1 51.03 ? N5 O8T 401 A 1 HETATM 19 N N O8T . . . B 2 -3.332 -1.154 23.727 1 52.45 ? N O8T 401 A 1 HETATM 20 C C3 O8T . . . B 2 -2.552 -1.43 24.891 1 62.17 ? C3 O8T 401 A 1 HETATM 21 C C2 O8T . . . B 2 -1.163 -1.483 24.79 1 65.21 ? C2 O8T 401 A 1 HETATM 22 C C1 O8T . . . B 2 -0.408 -1.799 25.905 1 67.82 ? C1 O8T 401 A 1 HETATM 23 C C O8T . . . B 2 -1.025 -2.057 27.116 1 66.65 ? C O8T 401 A 1 HETATM 24 C C16 O8T . . . B 2 -4.456 2.595 16.806 1 32.02 ? C16 O8T 401 A 1 HETATM 25 C C17 O8T . . . B 2 -0.907 3.338 15.68 1 31.44 ? C17 O8T 401 A 1 HETATM 26 O O1 O8T . . . B 2 0.18 2.795 15.858 1 31.71 ? O1 O8T 401 A 1 HETATM 27 C C18 O8T . . . B 2 -0.026 4.685 13.87 1 31.27 ? C18 O8T 401 A 1 HETATM 28 C C26 O8T . . . B 2 -0.052 3.767 12.632 1 31.38 ? C26 O8T 401 A 1 HETATM 29 C C27 O8T . . . B 2 1.155 3.742 11.715 1 33.42 ? C27 O8T 401 A 1 HETATM 30 C C28 O8T . . . B 2 2.499 3.467 12.359 1 30.12 ? C28 O8T 401 A 1 HETATM 31 C C33 O8T . . . B 2 2.559 2.055 12.956 1 30.81 ? C33 O8T 401 A 1 HETATM 32 C C32 O8T . . . B 2 3.952 1.683 13.456 1 30.69 ? C32 O8T 401 A 1 HETATM 33 C C31 O8T . . . B 2 4.978 1.832 12.351 1 31.42 ? C31 O8T 401 A 1 HETATM 34 C C30 O8T . . . B 2 4.979 3.241 11.819 1 31.93 ? C30 O8T 401 A 1 HETATM 35 C C29 O8T . . . B 2 3.607 3.638 11.311 1 31.46 ? C29 O8T 401 A 1 HETATM 36 C C19 O8T . . . B 2 -0.057 6.197 13.633 1 32.25 ? C19 O8T 401 A 1 HETATM 37 O O O8T . . . B 2 -0.319 6.652 12.53 1 31.94 ? O O8T 401 A 1 HETATM 38 C C20 O8T . . . B 2 -0.063 8.416 14.735 1 43.62 ? C20 O8T 401 A 1 HETATM 39 C C25 O8T . . . B 2 -1.202 8.747 15.693 1 46.06 ? C25 O8T 401 A 1 HETATM 40 C C24 O8T . . . B 2 -1.588 10.227 15.615 1 51.82 ? C24 O8T 401 A 1 HETATM 41 C C23 O8T . . . B 2 -0.406 11.101 15.199 1 50.69 ? C23 O8T 401 A 1 HETATM 42 C C22 O8T . . . B 2 0.905 10.54 15.717 1 45.14 ? C22 O8T 401 A 1 HETATM 43 C C21 O8T . . . B 2 1.208 9.158 15.125 1 47.71 ? C21 O8T 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #