data_6Y5O # _model_server_result.job_id rKgC1ZVOAn01q7sTsESBZg _model_server_result.datetime_utc '2024-10-19 19:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6Y5O # _exptl.entry_id 6Y5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.228 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-fluorophenyl)-5,7-bis(oxidanyl)chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y5O _cell.length_a 128.069 _cell.length_b 128.069 _cell.length_c 116.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.025 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C15 H9 F O4' _chem_comp.formula_weight 272.228 _chem_comp.id O9Z _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-fluorophenyl)-5,7-bis(oxidanyl)chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y5O _atom_sites.fract_transf_matrix[1][1] 0.007808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O9Z A 1 901 901 O9Z LIG . C 3 HOH A 1 1001 235 HOH HOH . C 3 HOH A 2 1002 367 HOH HOH . C 3 HOH A 3 1003 96 HOH HOH . C 3 HOH A 4 1004 87 HOH HOH . C 3 HOH A 5 1005 46 HOH HOH . C 3 HOH A 6 1006 271 HOH HOH . C 3 HOH A 7 1007 183 HOH HOH . C 3 HOH A 8 1008 137 HOH HOH . C 3 HOH A 9 1009 19 HOH HOH . C 3 HOH A 10 1010 13 HOH HOH . C 3 HOH A 11 1011 153 HOH HOH . C 3 HOH A 12 1012 80 HOH HOH . C 3 HOH A 13 1013 107 HOH HOH . C 3 HOH A 14 1014 67 HOH HOH . C 3 HOH A 15 1015 85 HOH HOH . C 3 HOH A 16 1016 82 HOH HOH . C 3 HOH A 17 1017 358 HOH HOH . C 3 HOH A 18 1018 145 HOH HOH . C 3 HOH A 19 1019 342 HOH HOH . C 3 HOH A 20 1020 158 HOH HOH . C 3 HOH A 21 1021 75 HOH HOH . C 3 HOH A 22 1022 175 HOH HOH . C 3 HOH A 23 1023 204 HOH HOH . C 3 HOH A 24 1024 16 HOH HOH . C 3 HOH A 25 1025 161 HOH HOH . C 3 HOH A 26 1026 148 HOH HOH . C 3 HOH A 27 1027 202 HOH HOH . C 3 HOH A 28 1028 173 HOH HOH . C 3 HOH A 29 1029 130 HOH HOH . C 3 HOH A 30 1030 76 HOH HOH . C 3 HOH A 31 1031 94 HOH HOH . C 3 HOH A 32 1032 132 HOH HOH . C 3 HOH A 33 1033 331 HOH HOH . C 3 HOH A 34 1034 119 HOH HOH . C 3 HOH A 35 1035 229 HOH HOH . C 3 HOH A 36 1036 10 HOH HOH . C 3 HOH A 37 1037 256 HOH HOH . C 3 HOH A 38 1038 79 HOH HOH . C 3 HOH A 39 1039 53 HOH HOH . C 3 HOH A 40 1040 144 HOH HOH . C 3 HOH A 41 1041 45 HOH HOH . C 3 HOH A 42 1042 136 HOH HOH . C 3 HOH A 43 1043 92 HOH HOH . C 3 HOH A 44 1044 309 HOH HOH . C 3 HOH A 45 1045 155 HOH HOH . C 3 HOH A 46 1046 90 HOH HOH . C 3 HOH A 47 1047 311 HOH HOH . C 3 HOH A 48 1048 159 HOH HOH . C 3 HOH A 49 1049 168 HOH HOH . C 3 HOH A 50 1050 142 HOH HOH . C 3 HOH A 51 1051 351 HOH HOH . C 3 HOH A 52 1052 339 HOH HOH . C 3 HOH A 53 1053 241 HOH HOH . C 3 HOH A 54 1054 164 HOH HOH . C 3 HOH A 55 1055 50 HOH HOH . C 3 HOH A 56 1056 362 HOH HOH . C 3 HOH A 57 1057 11 HOH HOH . C 3 HOH A 58 1058 165 HOH HOH . C 3 HOH A 59 1059 176 HOH HOH . C 3 HOH A 60 1060 120 HOH HOH . C 3 HOH A 61 1061 65 HOH HOH . C 3 HOH A 62 1062 129 HOH HOH . C 3 HOH A 63 1063 7 HOH HOH . C 3 HOH A 64 1064 29 HOH HOH . C 3 HOH A 65 1065 23 HOH HOH . C 3 HOH A 66 1066 22 HOH HOH . C 3 HOH A 67 1067 301 HOH HOH . C 3 HOH A 68 1068 17 HOH HOH . C 3 HOH A 69 1069 34 HOH HOH . C 3 HOH A 70 1070 208 HOH HOH . C 3 HOH A 71 1071 272 HOH HOH . C 3 HOH A 72 1072 118 HOH HOH . C 3 HOH A 73 1073 84 HOH HOH . C 3 HOH A 74 1074 312 HOH HOH . C 3 HOH A 75 1075 140 HOH HOH . C 3 HOH A 76 1076 212 HOH HOH . C 3 HOH A 77 1077 108 HOH HOH . C 3 HOH A 78 1078 139 HOH HOH . C 3 HOH A 79 1079 206 HOH HOH . C 3 HOH A 80 1080 163 HOH HOH . C 3 HOH A 81 1081 95 HOH HOH . C 3 HOH A 82 1082 314 HOH HOH . C 3 HOH A 83 1083 243 HOH HOH . C 3 HOH A 84 1084 74 HOH HOH . C 3 HOH A 85 1085 117 HOH HOH . C 3 HOH A 86 1086 56 HOH HOH . C 3 HOH A 87 1087 194 HOH HOH . C 3 HOH A 88 1088 18 HOH HOH . C 3 HOH A 89 1089 359 HOH HOH . C 3 HOH A 90 1090 122 HOH HOH . C 3 HOH A 91 1091 196 HOH HOH . C 3 HOH A 92 1092 340 HOH HOH . C 3 HOH A 93 1093 203 HOH HOH . C 3 HOH A 94 1094 36 HOH HOH . C 3 HOH A 95 1095 59 HOH HOH . C 3 HOH A 96 1096 64 HOH HOH . C 3 HOH A 97 1097 147 HOH HOH . C 3 HOH A 98 1098 54 HOH HOH . C 3 HOH A 99 1099 38 HOH HOH . C 3 HOH A 100 1100 8 HOH HOH . C 3 HOH A 101 1101 166 HOH HOH . C 3 HOH A 102 1102 28 HOH HOH . C 3 HOH A 103 1103 83 HOH HOH . C 3 HOH A 104 1104 98 HOH HOH . C 3 HOH A 105 1105 141 HOH HOH . C 3 HOH A 106 1106 247 HOH HOH . C 3 HOH A 107 1107 135 HOH HOH . C 3 HOH A 108 1108 110 HOH HOH . C 3 HOH A 109 1109 134 HOH HOH . C 3 HOH A 110 1110 41 HOH HOH . C 3 HOH A 111 1111 329 HOH HOH . C 3 HOH A 112 1112 260 HOH HOH . C 3 HOH A 113 1113 321 HOH HOH . C 3 HOH A 114 1114 333 HOH HOH . C 3 HOH A 115 1115 200 HOH HOH . C 3 HOH A 116 1116 97 HOH HOH . C 3 HOH A 117 1117 14 HOH HOH . C 3 HOH A 118 1118 128 HOH HOH . C 3 HOH A 119 1119 30 HOH HOH . C 3 HOH A 120 1120 162 HOH HOH . C 3 HOH A 121 1121 250 HOH HOH . C 3 HOH A 122 1122 33 HOH HOH . C 3 HOH A 123 1123 37 HOH HOH . C 3 HOH A 124 1124 9 HOH HOH . C 3 HOH A 125 1125 15 HOH HOH . C 3 HOH A 126 1126 226 HOH HOH . C 3 HOH A 127 1127 146 HOH HOH . C 3 HOH A 128 1128 154 HOH HOH . C 3 HOH A 129 1129 330 HOH HOH . C 3 HOH A 130 1130 48 HOH HOH . C 3 HOH A 131 1131 73 HOH HOH . C 3 HOH A 132 1132 106 HOH HOH . C 3 HOH A 133 1133 160 HOH HOH . C 3 HOH A 134 1134 167 HOH HOH . C 3 HOH A 135 1135 149 HOH HOH . C 3 HOH A 136 1136 323 HOH HOH . C 3 HOH A 137 1137 156 HOH HOH . C 3 HOH A 138 1138 325 HOH HOH . C 3 HOH A 139 1139 91 HOH HOH . C 3 HOH A 140 1140 191 HOH HOH . C 3 HOH A 141 1141 217 HOH HOH . C 3 HOH A 142 1142 126 HOH HOH . C 3 HOH A 143 1143 341 HOH HOH . C 3 HOH A 144 1144 116 HOH HOH . C 3 HOH A 145 1145 248 HOH HOH . C 3 HOH A 146 1146 55 HOH HOH . C 3 HOH A 147 1147 51 HOH HOH . C 3 HOH A 148 1148 232 HOH HOH . C 3 HOH A 149 1149 255 HOH HOH . C 3 HOH A 150 1150 178 HOH HOH . C 3 HOH A 151 1151 81 HOH HOH . C 3 HOH A 152 1152 123 HOH HOH . C 3 HOH A 153 1153 317 HOH HOH . C 3 HOH A 154 1154 328 HOH HOH . C 3 HOH A 155 1155 93 HOH HOH . C 3 HOH A 156 1156 89 HOH HOH . C 3 HOH A 157 1157 292 HOH HOH . C 3 HOH A 158 1158 187 HOH HOH . C 3 HOH A 159 1159 172 HOH HOH . C 3 HOH A 160 1160 52 HOH HOH . C 3 HOH A 161 1161 68 HOH HOH . C 3 HOH A 162 1162 338 HOH HOH . C 3 HOH A 163 1163 254 HOH HOH . C 3 HOH A 164 1164 360 HOH HOH . C 3 HOH A 165 1165 240 HOH HOH . C 3 HOH A 166 1166 252 HOH HOH . C 3 HOH A 167 1167 131 HOH HOH . C 3 HOH A 168 1168 3 HOH HOH . C 3 HOH A 169 1169 112 HOH HOH . C 3 HOH A 170 1170 205 HOH HOH . C 3 HOH A 171 1171 49 HOH HOH . C 3 HOH A 172 1172 181 HOH HOH . C 3 HOH A 173 1173 58 HOH HOH . C 3 HOH A 174 1174 109 HOH HOH . C 3 HOH A 175 1175 344 HOH HOH . C 3 HOH A 176 1176 327 HOH HOH . C 3 HOH A 177 1177 133 HOH HOH . C 3 HOH A 178 1178 223 HOH HOH . C 3 HOH A 179 1179 40 HOH HOH . C 3 HOH A 180 1180 289 HOH HOH . C 3 HOH A 181 1181 335 HOH HOH . C 3 HOH A 182 1182 77 HOH HOH . C 3 HOH A 183 1183 57 HOH HOH . C 3 HOH A 184 1184 32 HOH HOH . C 3 HOH A 185 1185 220 HOH HOH . C 3 HOH A 186 1186 219 HOH HOH . C 3 HOH A 187 1187 207 HOH HOH . C 3 HOH A 188 1188 366 HOH HOH . C 3 HOH A 189 1189 113 HOH HOH . C 3 HOH A 190 1190 111 HOH HOH . C 3 HOH A 191 1191 356 HOH HOH . C 3 HOH A 192 1192 66 HOH HOH . C 3 HOH A 193 1193 70 HOH HOH . C 3 HOH A 194 1194 354 HOH HOH . C 3 HOH A 195 1195 44 HOH HOH . C 3 HOH A 196 1196 365 HOH HOH . C 3 HOH A 197 1197 189 HOH HOH . C 3 HOH A 198 1198 121 HOH HOH . C 3 HOH A 199 1199 284 HOH HOH . C 3 HOH A 200 1200 86 HOH HOH . C 3 HOH A 201 1201 152 HOH HOH . C 3 HOH A 202 1202 5 HOH HOH . C 3 HOH A 203 1203 193 HOH HOH . C 3 HOH A 204 1204 25 HOH HOH . C 3 HOH A 205 1205 363 HOH HOH . C 3 HOH A 206 1206 127 HOH HOH . C 3 HOH A 207 1207 72 HOH HOH . C 3 HOH A 208 1208 20 HOH HOH . C 3 HOH A 209 1209 2 HOH HOH . C 3 HOH A 210 1210 150 HOH HOH . C 3 HOH A 211 1211 242 HOH HOH . C 3 HOH A 212 1212 199 HOH HOH . C 3 HOH A 213 1213 12 HOH HOH . C 3 HOH A 214 1214 336 HOH HOH . C 3 HOH A 215 1215 253 HOH HOH . C 3 HOH A 216 1216 43 HOH HOH . C 3 HOH A 217 1217 353 HOH HOH . C 3 HOH A 218 1218 337 HOH HOH . C 3 HOH A 219 1219 169 HOH HOH . C 3 HOH A 220 1220 307 HOH HOH . C 3 HOH A 221 1221 269 HOH HOH . C 3 HOH A 222 1222 295 HOH HOH . C 3 HOH A 223 1223 355 HOH HOH . C 3 HOH A 224 1224 24 HOH HOH . C 3 HOH A 225 1225 346 HOH HOH . C 3 HOH A 226 1226 104 HOH HOH . C 3 HOH A 227 1227 352 HOH HOH . C 3 HOH A 228 1228 364 HOH HOH . C 3 HOH A 229 1229 332 HOH HOH . C 3 HOH A 230 1230 246 HOH HOH . C 3 HOH A 231 1231 361 HOH HOH . C 3 HOH A 232 1232 39 HOH HOH . C 3 HOH A 233 1233 88 HOH HOH . C 3 HOH A 234 1234 345 HOH HOH . C 3 HOH A 235 1235 322 HOH HOH . C 3 HOH A 236 1236 186 HOH HOH . C 3 HOH A 237 1237 198 HOH HOH . C 3 HOH A 238 1238 266 HOH HOH . C 3 HOH A 239 1239 249 HOH HOH . C 3 HOH A 240 1240 105 HOH HOH . C 3 HOH A 241 1241 357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O9Z . . . B 2 37.503 36.652 33.179 1 45.26 ? C4 O9Z 901 A 1 HETATM 2 C C5 O9Z . . . B 2 37.545 35.988 31.925 1 44.87 ? C5 O9Z 901 A 1 HETATM 3 C C6 O9Z . . . B 2 38.406 36.518 30.958 1 47.65 ? C6 O9Z 901 A 1 HETATM 4 C C7 O9Z . . . B 2 36.74 34.8 31.612 1 41.6 ? C7 O9Z 901 A 1 HETATM 5 C C8 O9Z . . . B 2 36.947 34.264 30.295 1 38.54 ? C8 O9Z 901 A 1 HETATM 6 C C10 O9Z . . . B 2 38.102 34.326 28.081 1 53.72 ? C10 O9Z 901 A 1 HETATM 7 C C13 O9Z . . . B 2 38.874 33.316 25.657 1 62.36 ? C13 O9Z 901 A 1 HETATM 8 C C15 O9Z . . . B 2 38.616 35.173 27.096 1 51.83 ? C15 O9Z 901 A 1 HETATM 9 C C1 O9Z . . . B 2 39.205 37.628 31.154 1 50.26 ? C1 O9Z 901 A 1 HETATM 10 C C2 O9Z . . . B 2 39.142 38.235 32.399 1 53.47 ? C2 O9Z 901 A 1 HETATM 11 C C3 O9Z . . . B 2 38.304 37.746 33.416 1 47.63 ? C3 O9Z 901 A 1 HETATM 12 C C9 O9Z . . . B 2 37.78 34.846 29.412 1 44.41 ? C9 O9Z 901 A 1 HETATM 13 O O1 O9Z . . . B 2 38.52 35.944 29.718 1 46.77 ? O1 O9Z 901 A 1 HETATM 14 O O2 O9Z . . . B 2 35.952 34.268 32.43 1 31.38 ? O2 O9Z 901 A 1 HETATM 15 O O3 O9Z . . . B 2 36.715 36.177 34.172 1 45.55 ? O3 O9Z 901 A 1 HETATM 16 O O4 O9Z . . . B 2 39.912 39.319 32.636 1 61.43 ? O4 O9Z 901 A 1 HETATM 17 C C11 O9Z . . . B 2 38.05 32.951 27.842 1 52.77 ? C11 O9Z 901 A 1 HETATM 18 C C12 O9Z . . . B 2 38.415 32.441 26.608 1 60.03 ? C12 O9Z 901 A 1 HETATM 19 C C14 O9Z . . . B 2 38.985 34.668 25.86 1 52.97 ? C14 O9Z 901 A 1 HETATM 20 F F1 O9Z . . . B 2 39.244 32.811 24.449 1 61.86 ? F1 O9Z 901 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 20 #