data_6Y6F
#
_model_server_result.job_id            pOmUJ8XyRVoJcGLtKLMOMQ 
_model_server_result.datetime_utc      '2024-10-11 09:20:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y6f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    6Y6F 
#
_exptl.entry_id    6Y6F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Y6F 
_cell.length_a            83.65 
_cell.length_b            83.65 
_cell.length_c            114.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y6F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6Y6F 
_atom_sites.fract_transf_matrix[1][1]    0.011955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OD2 A 1 401 1 OD2 000 . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 2 EDO EDO . 
E 3 EDO A 1 404 3 EDO EDO . 
F 3 EDO A 1 405 4 EDO EDO . 
G 4 HOH A 1 501 222 HOH HOH . 
G 4 HOH A 2 502 186 HOH HOH . 
G 4 HOH A 3 503 280 HOH HOH . 
G 4 HOH A 4 504 293 HOH HOH . 
G 4 HOH A 5 505 154 HOH HOH . 
G 4 HOH A 6 506 148 HOH HOH . 
G 4 HOH A 7 507 281 HOH HOH . 
G 4 HOH A 8 508 276 HOH HOH . 
G 4 HOH A 9 509 234 HOH HOH . 
G 4 HOH A 10 510 300 HOH HOH . 
G 4 HOH A 11 511 29 HOH HOH . 
G 4 HOH A 12 512 131 HOH HOH . 
G 4 HOH A 13 513 106 HOH HOH . 
G 4 HOH A 14 514 82 HOH HOH . 
G 4 HOH A 15 515 67 HOH HOH . 
G 4 HOH A 16 516 187 HOH HOH . 
G 4 HOH A 17 517 56 HOH HOH . 
G 4 HOH A 18 518 102 HOH HOH . 
G 4 HOH A 19 519 87 HOH HOH . 
G 4 HOH A 20 520 273 HOH HOH . 
G 4 HOH A 21 521 15 HOH HOH . 
G 4 HOH A 22 522 51 HOH HOH . 
G 4 HOH A 23 523 97 HOH HOH . 
G 4 HOH A 24 524 195 HOH HOH . 
G 4 HOH A 25 525 279 HOH HOH . 
G 4 HOH A 26 526 275 HOH HOH . 
G 4 HOH A 27 527 16 HOH HOH . 
G 4 HOH A 28 528 1 HOH HOH . 
G 4 HOH A 29 529 75 HOH HOH . 
G 4 HOH A 30 530 266 HOH HOH . 
G 4 HOH A 31 531 312 HOH HOH . 
G 4 HOH A 32 532 8 HOH HOH . 
G 4 HOH A 33 533 123 HOH HOH . 
G 4 HOH A 34 534 301 HOH HOH . 
G 4 HOH A 35 535 3 HOH HOH . 
G 4 HOH A 36 536 165 HOH HOH . 
G 4 HOH A 37 537 307 HOH HOH . 
G 4 HOH A 38 538 77 HOH HOH . 
G 4 HOH A 39 539 71 HOH HOH . 
G 4 HOH A 40 540 112 HOH HOH . 
G 4 HOH A 41 541 316 HOH HOH . 
G 4 HOH A 42 542 110 HOH HOH . 
G 4 HOH A 43 543 211 HOH HOH . 
G 4 HOH A 44 544 125 HOH HOH . 
G 4 HOH A 45 545 158 HOH HOH . 
G 4 HOH A 46 546 121 HOH HOH . 
G 4 HOH A 47 547 24 HOH HOH . 
G 4 HOH A 48 548 126 HOH HOH . 
G 4 HOH A 49 549 53 HOH HOH . 
G 4 HOH A 50 550 142 HOH HOH . 
G 4 HOH A 51 551 269 HOH HOH . 
G 4 HOH A 52 552 252 HOH HOH . 
G 4 HOH A 53 553 99 HOH HOH . 
G 4 HOH A 54 554 92 HOH HOH . 
G 4 HOH A 55 555 284 HOH HOH . 
G 4 HOH A 56 556 94 HOH HOH . 
G 4 HOH A 57 557 140 HOH HOH . 
G 4 HOH A 58 558 46 HOH HOH . 
G 4 HOH A 59 559 139 HOH HOH . 
G 4 HOH A 60 560 37 HOH HOH . 
G 4 HOH A 61 561 64 HOH HOH . 
G 4 HOH A 62 562 22 HOH HOH . 
G 4 HOH A 63 563 35 HOH HOH . 
G 4 HOH A 64 564 260 HOH HOH . 
G 4 HOH A 65 565 91 HOH HOH . 
G 4 HOH A 66 566 32 HOH HOH . 
G 4 HOH A 67 567 162 HOH HOH . 
G 4 HOH A 68 568 153 HOH HOH . 
G 4 HOH A 69 569 4 HOH HOH . 
G 4 HOH A 70 570 267 HOH HOH . 
G 4 HOH A 71 571 116 HOH HOH . 
G 4 HOH A 72 572 149 HOH HOH . 
G 4 HOH A 73 573 39 HOH HOH . 
G 4 HOH A 74 574 286 HOH HOH . 
G 4 HOH A 75 575 298 HOH HOH . 
G 4 HOH A 76 576 204 HOH HOH . 
G 4 HOH A 77 577 124 HOH HOH . 
G 4 HOH A 78 578 188 HOH HOH . 
G 4 HOH A 79 579 145 HOH HOH . 
G 4 HOH A 80 580 256 HOH HOH . 
G 4 HOH A 81 581 83 HOH HOH . 
G 4 HOH A 82 582 21 HOH HOH . 
G 4 HOH A 83 583 263 HOH HOH . 
G 4 HOH A 84 584 34 HOH HOH . 
G 4 HOH A 85 585 327 HOH HOH . 
G 4 HOH A 86 586 93 HOH HOH . 
G 4 HOH A 87 587 310 HOH HOH . 
G 4 HOH A 88 588 144 HOH HOH . 
G 4 HOH A 89 589 30 HOH HOH . 
G 4 HOH A 90 590 28 HOH HOH . 
G 4 HOH A 91 591 18 HOH HOH . 
G 4 HOH A 92 592 66 HOH HOH . 
G 4 HOH A 93 593 147 HOH HOH . 
G 4 HOH A 94 594 41 HOH HOH . 
G 4 HOH A 95 595 59 HOH HOH . 
G 4 HOH A 96 596 85 HOH HOH . 
G 4 HOH A 97 597 100 HOH HOH . 
G 4 HOH A 98 598 176 HOH HOH . 
G 4 HOH A 99 599 206 HOH HOH . 
G 4 HOH A 100 600 323 HOH HOH . 
G 4 HOH A 101 601 302 HOH HOH . 
G 4 HOH A 102 602 308 HOH HOH . 
G 4 HOH A 103 603 40 HOH HOH . 
G 4 HOH A 104 604 104 HOH HOH . 
G 4 HOH A 105 605 58 HOH HOH . 
G 4 HOH A 106 606 7 HOH HOH . 
G 4 HOH A 107 607 79 HOH HOH . 
G 4 HOH A 108 608 76 HOH HOH . 
G 4 HOH A 109 609 61 HOH HOH . 
G 4 HOH A 110 610 255 HOH HOH . 
G 4 HOH A 111 611 297 HOH HOH . 
G 4 HOH A 112 612 48 HOH HOH . 
G 4 HOH A 113 613 80 HOH HOH . 
G 4 HOH A 114 614 57 HOH HOH . 
G 4 HOH A 115 615 130 HOH HOH . 
G 4 HOH A 116 616 19 HOH HOH . 
G 4 HOH A 117 617 285 HOH HOH . 
G 4 HOH A 118 618 45 HOH HOH . 
G 4 HOH A 119 619 27 HOH HOH . 
G 4 HOH A 120 620 232 HOH HOH . 
G 4 HOH A 121 621 248 HOH HOH . 
G 4 HOH A 122 622 304 HOH HOH . 
G 4 HOH A 123 623 254 HOH HOH . 
G 4 HOH A 124 624 52 HOH HOH . 
G 4 HOH A 125 625 78 HOH HOH . 
G 4 HOH A 126 626 150 HOH HOH . 
G 4 HOH A 127 627 49 HOH HOH . 
G 4 HOH A 128 628 274 HOH HOH . 
G 4 HOH A 129 629 60 HOH HOH . 
G 4 HOH A 130 630 207 HOH HOH . 
G 4 HOH A 131 631 290 HOH HOH . 
G 4 HOH A 132 632 271 HOH HOH . 
G 4 HOH A 133 633 288 HOH HOH . 
G 4 HOH A 134 634 143 HOH HOH . 
G 4 HOH A 135 635 13 HOH HOH . 
G 4 HOH A 136 636 47 HOH HOH . 
G 4 HOH A 137 637 321 HOH HOH . 
G 4 HOH A 138 638 193 HOH HOH . 
G 4 HOH A 139 639 270 HOH HOH . 
G 4 HOH A 140 640 119 HOH HOH . 
G 4 HOH A 141 641 14 HOH HOH . 
G 4 HOH A 142 642 128 HOH HOH . 
G 4 HOH A 143 643 74 HOH HOH . 
G 4 HOH A 144 644 63 HOH HOH . 
G 4 HOH A 145 645 262 HOH HOH . 
G 4 HOH A 146 646 89 HOH HOH . 
G 4 HOH A 147 647 328 HOH HOH . 
G 4 HOH A 148 648 23 HOH HOH . 
G 4 HOH A 149 649 114 HOH HOH . 
G 4 HOH A 150 650 317 HOH HOH . 
G 4 HOH A 151 651 81 HOH HOH . 
G 4 HOH A 152 652 166 HOH HOH . 
G 4 HOH A 153 653 109 HOH HOH . 
G 4 HOH A 154 654 197 HOH HOH . 
G 4 HOH A 155 655 86 HOH HOH . 
G 4 HOH A 156 656 129 HOH HOH . 
G 4 HOH A 157 657 322 HOH HOH . 
G 4 HOH A 158 658 68 HOH HOH . 
G 4 HOH A 159 659 44 HOH HOH . 
G 4 HOH A 160 660 72 HOH HOH . 
G 4 HOH A 161 661 11 HOH HOH . 
G 4 HOH A 162 662 90 HOH HOH . 
G 4 HOH A 163 663 101 HOH HOH . 
G 4 HOH A 164 664 17 HOH HOH . 
G 4 HOH A 165 665 62 HOH HOH . 
G 4 HOH A 166 666 42 HOH HOH . 
G 4 HOH A 167 667 202 HOH HOH . 
G 4 HOH A 168 668 199 HOH HOH . 
G 4 HOH A 169 669 117 HOH HOH . 
G 4 HOH A 170 670 295 HOH HOH . 
G 4 HOH A 171 671 320 HOH HOH . 
G 4 HOH A 172 672 127 HOH HOH . 
G 4 HOH A 173 673 20 HOH HOH . 
G 4 HOH A 174 674 96 HOH HOH . 
G 4 HOH A 175 675 253 HOH HOH . 
G 4 HOH A 176 676 173 HOH HOH . 
G 4 HOH A 177 677 155 HOH HOH . 
G 4 HOH A 178 678 135 HOH HOH . 
G 4 HOH A 179 679 25 HOH HOH . 
G 4 HOH A 180 680 31 HOH HOH . 
G 4 HOH A 181 681 84 HOH HOH . 
G 4 HOH A 182 682 182 HOH HOH . 
G 4 HOH A 183 683 303 HOH HOH . 
G 4 HOH A 184 684 70 HOH HOH . 
G 4 HOH A 185 685 219 HOH HOH . 
G 4 HOH A 186 686 168 HOH HOH . 
G 4 HOH A 187 687 237 HOH HOH . 
G 4 HOH A 188 688 133 HOH HOH . 
G 4 HOH A 189 689 287 HOH HOH . 
G 4 HOH A 190 690 69 HOH HOH . 
G 4 HOH A 191 691 10 HOH HOH . 
G 4 HOH A 192 692 136 HOH HOH . 
G 4 HOH A 193 693 318 HOH HOH . 
G 4 HOH A 194 694 55 HOH HOH . 
G 4 HOH A 195 695 43 HOH HOH . 
G 4 HOH A 196 696 36 HOH HOH . 
G 4 HOH A 197 697 26 HOH HOH . 
G 4 HOH A 198 698 103 HOH HOH . 
G 4 HOH A 199 699 218 HOH HOH . 
G 4 HOH A 200 700 33 HOH HOH . 
G 4 HOH A 201 701 261 HOH HOH . 
G 4 HOH A 202 702 50 HOH HOH . 
G 4 HOH A 203 703 157 HOH HOH . 
G 4 HOH A 204 704 12 HOH HOH . 
G 4 HOH A 205 705 238 HOH HOH . 
G 4 HOH A 206 706 264 HOH HOH . 
G 4 HOH A 207 707 319 HOH HOH . 
G 4 HOH A 208 708 257 HOH HOH . 
G 4 HOH A 209 709 95 HOH HOH . 
G 4 HOH A 210 710 6 HOH HOH . 
G 4 HOH A 211 711 265 HOH HOH . 
G 4 HOH A 212 712 282 HOH HOH . 
G 4 HOH A 213 713 191 HOH HOH . 
G 4 HOH A 214 714 172 HOH HOH . 
G 4 HOH A 215 715 184 HOH HOH . 
G 4 HOH A 216 716 105 HOH HOH . 
G 4 HOH A 217 717 5 HOH HOH . 
G 4 HOH A 218 718 38 HOH HOH . 
G 4 HOH A 219 719 239 HOH HOH . 
G 4 HOH A 220 720 213 HOH HOH . 
G 4 HOH A 221 721 309 HOH HOH . 
G 4 HOH A 222 722 326 HOH HOH . 
G 4 HOH A 223 723 151 HOH HOH . 
G 4 HOH A 224 724 122 HOH HOH . 
G 4 HOH A 225 725 65 HOH HOH . 
G 4 HOH A 226 726 2 HOH HOH . 
G 4 HOH A 227 727 325 HOH HOH . 
G 4 HOH A 228 728 289 HOH HOH . 
G 4 HOH A 229 729 292 HOH HOH . 
G 4 HOH A 230 730 118 HOH HOH . 
G 4 HOH A 231 731 134 HOH HOH . 
G 4 HOH A 232 732 208 HOH HOH . 
G 4 HOH A 233 733 294 HOH HOH . 
G 4 HOH A 234 734 311 HOH HOH . 
G 4 HOH A 235 735 313 HOH HOH . 
G 4 HOH A 236 736 203 HOH HOH . 
G 4 HOH A 237 737 141 HOH HOH . 
G 4 HOH A 238 738 54 HOH HOH . 
G 4 HOH A 239 739 138 HOH HOH . 
G 4 HOH A 240 740 164 HOH HOH . 
G 4 HOH A 241 741 314 HOH HOH . 
G 4 HOH A 242 742 228 HOH HOH . 
G 4 HOH A 243 743 299 HOH HOH . 
G 4 HOH A 244 744 108 HOH HOH . 
G 4 HOH A 245 745 224 HOH HOH . 
G 4 HOH A 246 746 324 HOH HOH . 
G 4 HOH A 247 747 201 HOH HOH . 
G 4 HOH A 248 748 177 HOH HOH . 
G 4 HOH A 249 749 283 HOH HOH . 
G 4 HOH A 250 750 226 HOH HOH . 
G 4 HOH A 251 751 225 HOH HOH . 
G 4 HOH A 252 752 137 HOH HOH . 
G 4 HOH A 253 753 169 HOH HOH . 
G 4 HOH A 254 754 272 HOH HOH . 
G 4 HOH A 255 755 247 HOH HOH . 
G 4 HOH A 256 756 227 HOH HOH . 
G 4 HOH A 257 757 221 HOH HOH . 
G 4 HOH A 258 758 198 HOH HOH . 
G 4 HOH A 259 759 258 HOH HOH . 
G 4 HOH A 260 760 315 HOH HOH . 
G 4 HOH A 261 761 278 HOH HOH . 
G 4 HOH A 262 762 170 HOH HOH . 
G 4 HOH A 263 763 223 HOH HOH . 
G 4 HOH A 264 764 268 HOH HOH . 
G 4 HOH A 265 765 259 HOH HOH . 
G 4 HOH A 266 766 120 HOH HOH . 
G 4 HOH A 267 767 113 HOH HOH . 
G 4 HOH A 268 768 73 HOH HOH . 
G 4 HOH A 269 769 230 HOH HOH . 
G 4 HOH A 270 770 132 HOH HOH . 
G 4 HOH A 271 771 160 HOH HOH . 
G 4 HOH A 272 772 200 HOH HOH . 
G 4 HOH A 273 773 163 HOH HOH . 
G 4 HOH A 274 774 277 HOH HOH . 
G 4 HOH A 275 775 215 HOH HOH . 
G 4 HOH A 276 776 111 HOH HOH . 
G 4 HOH A 277 777 174 HOH HOH . 
G 4 HOH A 278 778 305 HOH HOH . 
G 4 HOH A 279 779 306 HOH HOH . 
G 4 HOH A 280 780 236 HOH HOH . 
G 4 HOH A 281 781 249 HOH HOH . 
G 4 HOH A 282 782 244 HOH HOH . 
G 4 HOH A 283 783 107 HOH HOH . 
G 4 HOH A 284 784 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . E 3 63.082 6.645 4.286 0.5 51.23 ? C1 EDO 404 A 1 
HETATM 2 C C1 EDO . B . E 3 63.403 6.164 3.48 0.5 46.57 ? C1 EDO 404 A 1 
HETATM 3 O O1 EDO . A . E 3 64.32 6.623 5.006 0.5 52.39 ? O1 EDO 404 A 1 
HETATM 4 O O1 EDO . B . E 3 64.036 6.214 4.763 0.5 48.24 ? O1 EDO 404 A 1 
HETATM 5 C C2 EDO . A . E 3 63.333 7.058 2.844 0.5 50.93 ? C2 EDO 404 A 1 
HETATM 6 C C2 EDO . B . E 3 63.674 7.472 2.748 0.5 47.12 ? C2 EDO 404 A 1 
HETATM 7 O O2 EDO . A . E 3 64.713 6.878 2.514 0.5 49.34 ? O2 EDO 404 A 1 
HETATM 8 O O2 EDO . B . E 3 62.839 8.501 3.297 0.5 45.66 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#