data_6Y6H # _model_server_result.job_id DMVJyG-eDawI2cLJY_YQvg _model_server_result.datetime_utc '2024-11-22 23:04:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Y6H # _exptl.entry_id 6Y6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[6-(1-benzothiophen-2-yl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y6H _cell.length_a 83.599 _cell.length_b 83.599 _cell.length_c 114.609 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H10 N2 O2 S3' _chem_comp.formula_weight 358.458 _chem_comp.id OBW _chem_comp.mon_nstd_flag . _chem_comp.name '2-[6-(1-benzothiophen-2-yl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C15 OBW doub 246 n y N C4 OBW sing 247 n y S1 C14 OBW sing 248 n y S1 C7 OBW sing 249 n y C15 N1 OBW sing 250 n y C5 C4 OBW sing 251 n y C5 C6 OBW doub 252 n y C13 C14 OBW doub 253 n y C13 C12 OBW sing 254 n y C4 C3 OBW doub 255 n y C14 C9 OBW sing 256 n y C12 C11 OBW doub 257 n y C6 C7 OBW sing 258 n n C6 S2 OBW sing 259 n y N1 C2 OBW doub 260 n y C7 C8 OBW doub 261 n y C3 C2 OBW sing 262 n y C3 S2 OBW sing 263 n y C9 C8 OBW sing 264 n y C9 C10 OBW doub 265 n y C2 S OBW sing 266 n n C11 C10 OBW sing 267 n y S C1 OBW sing 268 n n C1 C OBW sing 269 n n C O OBW doub 270 n n C O1 OBW sing 271 n n C5 H1 OBW sing 272 n n O1 H2 OBW sing 273 n n C1 H3 OBW sing 274 n n C1 H4 OBW sing 275 n n C15 H5 OBW sing 276 n n C8 H6 OBW sing 277 n n C13 H7 OBW sing 278 n n C12 H8 OBW sing 279 n n C11 H9 OBW sing 280 n n C10 H10 OBW sing 281 n n # _atom_sites.entry_id 6Y6H _atom_sites.fract_transf_matrix[1][1] 0.011962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OBW A 1 401 1 OBW YYY . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 4 HOH A 1 501 41 HOH HOH . H 4 HOH A 2 502 171 HOH HOH . H 4 HOH A 3 503 8 HOH HOH . H 4 HOH A 4 504 162 HOH HOH . H 4 HOH A 5 505 130 HOH HOH . H 4 HOH A 6 506 120 HOH HOH . H 4 HOH A 7 507 173 HOH HOH . H 4 HOH A 8 508 165 HOH HOH . H 4 HOH A 9 509 127 HOH HOH . H 4 HOH A 10 510 60 HOH HOH . H 4 HOH A 11 511 75 HOH HOH . H 4 HOH A 12 512 115 HOH HOH . H 4 HOH A 13 513 159 HOH HOH . H 4 HOH A 14 514 18 HOH HOH . H 4 HOH A 15 515 69 HOH HOH . H 4 HOH A 16 516 30 HOH HOH . H 4 HOH A 17 517 44 HOH HOH . H 4 HOH A 18 518 157 HOH HOH . H 4 HOH A 19 519 181 HOH HOH . H 4 HOH A 20 520 5 HOH HOH . H 4 HOH A 21 521 14 HOH HOH . H 4 HOH A 22 522 17 HOH HOH . H 4 HOH A 23 523 94 HOH HOH . H 4 HOH A 24 524 85 HOH HOH . H 4 HOH A 25 525 70 HOH HOH . H 4 HOH A 26 526 90 HOH HOH . H 4 HOH A 27 527 29 HOH HOH . H 4 HOH A 28 528 98 HOH HOH . H 4 HOH A 29 529 102 HOH HOH . H 4 HOH A 30 530 81 HOH HOH . H 4 HOH A 31 531 137 HOH HOH . H 4 HOH A 32 532 86 HOH HOH . H 4 HOH A 33 533 49 HOH HOH . H 4 HOH A 34 534 106 HOH HOH . H 4 HOH A 35 535 126 HOH HOH . H 4 HOH A 36 536 72 HOH HOH . H 4 HOH A 37 537 129 HOH HOH . H 4 HOH A 38 538 73 HOH HOH . H 4 HOH A 39 539 59 HOH HOH . H 4 HOH A 40 540 11 HOH HOH . H 4 HOH A 41 541 178 HOH HOH . H 4 HOH A 42 542 180 HOH HOH . H 4 HOH A 43 543 67 HOH HOH . H 4 HOH A 44 544 112 HOH HOH . H 4 HOH A 45 545 68 HOH HOH . H 4 HOH A 46 546 163 HOH HOH . H 4 HOH A 47 547 24 HOH HOH . H 4 HOH A 48 548 31 HOH HOH . H 4 HOH A 49 549 52 HOH HOH . H 4 HOH A 50 550 55 HOH HOH . H 4 HOH A 51 551 161 HOH HOH . H 4 HOH A 52 552 179 HOH HOH . H 4 HOH A 53 553 33 HOH HOH . H 4 HOH A 54 554 108 HOH HOH . H 4 HOH A 55 555 100 HOH HOH . H 4 HOH A 56 556 53 HOH HOH . H 4 HOH A 57 557 64 HOH HOH . H 4 HOH A 58 558 58 HOH HOH . H 4 HOH A 59 559 25 HOH HOH . H 4 HOH A 60 560 9 HOH HOH . H 4 HOH A 61 561 36 HOH HOH . H 4 HOH A 62 562 153 HOH HOH . H 4 HOH A 63 563 56 HOH HOH . H 4 HOH A 64 564 134 HOH HOH . H 4 HOH A 65 565 96 HOH HOH . H 4 HOH A 66 566 57 HOH HOH . H 4 HOH A 67 567 43 HOH HOH . H 4 HOH A 68 568 37 HOH HOH . H 4 HOH A 69 569 66 HOH HOH . H 4 HOH A 70 570 84 HOH HOH . H 4 HOH A 71 571 110 HOH HOH . H 4 HOH A 72 572 92 HOH HOH . H 4 HOH A 73 573 164 HOH HOH . H 4 HOH A 74 574 1 HOH HOH . H 4 HOH A 75 575 7 HOH HOH . H 4 HOH A 76 576 35 HOH HOH . H 4 HOH A 77 577 34 HOH HOH . H 4 HOH A 78 578 28 HOH HOH . H 4 HOH A 79 579 15 HOH HOH . H 4 HOH A 80 580 82 HOH HOH . H 4 HOH A 81 581 61 HOH HOH . H 4 HOH A 82 582 107 HOH HOH . H 4 HOH A 83 583 169 HOH HOH . H 4 HOH A 84 584 155 HOH HOH . H 4 HOH A 85 585 103 HOH HOH . H 4 HOH A 86 586 45 HOH HOH . H 4 HOH A 87 587 95 HOH HOH . H 4 HOH A 88 588 13 HOH HOH . H 4 HOH A 89 589 54 HOH HOH . H 4 HOH A 90 590 19 HOH HOH . H 4 HOH A 91 591 16 HOH HOH . H 4 HOH A 92 592 79 HOH HOH . H 4 HOH A 93 593 174 HOH HOH . H 4 HOH A 94 594 22 HOH HOH . H 4 HOH A 95 595 47 HOH HOH . H 4 HOH A 96 596 50 HOH HOH . H 4 HOH A 97 597 65 HOH HOH . H 4 HOH A 98 598 42 HOH HOH . H 4 HOH A 99 599 182 HOH HOH . H 4 HOH A 100 600 78 HOH HOH . H 4 HOH A 101 601 118 HOH HOH . H 4 HOH A 102 602 105 HOH HOH . H 4 HOH A 103 603 12 HOH HOH . H 4 HOH A 104 604 113 HOH HOH . H 4 HOH A 105 605 62 HOH HOH . H 4 HOH A 106 606 99 HOH HOH . H 4 HOH A 107 607 128 HOH HOH . H 4 HOH A 108 608 101 HOH HOH . H 4 HOH A 109 609 119 HOH HOH . H 4 HOH A 110 610 88 HOH HOH . H 4 HOH A 111 611 132 HOH HOH . H 4 HOH A 112 612 77 HOH HOH . H 4 HOH A 113 613 32 HOH HOH . H 4 HOH A 114 614 177 HOH HOH . H 4 HOH A 115 615 114 HOH HOH . H 4 HOH A 116 616 26 HOH HOH . H 4 HOH A 117 617 140 HOH HOH . H 4 HOH A 118 618 48 HOH HOH . H 4 HOH A 119 619 21 HOH HOH . H 4 HOH A 120 620 122 HOH HOH . H 4 HOH A 121 621 46 HOH HOH . H 4 HOH A 122 622 51 HOH HOH . H 4 HOH A 123 623 147 HOH HOH . H 4 HOH A 124 624 131 HOH HOH . H 4 HOH A 125 625 40 HOH HOH . H 4 HOH A 126 626 71 HOH HOH . H 4 HOH A 127 627 83 HOH HOH . H 4 HOH A 128 628 23 HOH HOH . H 4 HOH A 129 629 176 HOH HOH . H 4 HOH A 130 630 63 HOH HOH . H 4 HOH A 131 631 109 HOH HOH . H 4 HOH A 132 632 20 HOH HOH . H 4 HOH A 133 633 38 HOH HOH . H 4 HOH A 134 634 27 HOH HOH . H 4 HOH A 135 635 2 HOH HOH . H 4 HOH A 136 636 152 HOH HOH . H 4 HOH A 137 637 172 HOH HOH . H 4 HOH A 138 638 76 HOH HOH . H 4 HOH A 139 639 4 HOH HOH . H 4 HOH A 140 640 97 HOH HOH . H 4 HOH A 141 641 10 HOH HOH . H 4 HOH A 142 642 74 HOH HOH . H 4 HOH A 143 643 183 HOH HOH . H 4 HOH A 144 644 175 HOH HOH . H 4 HOH A 145 645 142 HOH HOH . H 4 HOH A 146 646 39 HOH HOH . H 4 HOH A 147 647 138 HOH HOH . H 4 HOH A 148 648 184 HOH HOH . H 4 HOH A 149 649 167 HOH HOH . H 4 HOH A 150 650 160 HOH HOH . H 4 HOH A 151 651 154 HOH HOH . H 4 HOH A 152 652 158 HOH HOH . H 4 HOH A 153 653 141 HOH HOH . H 4 HOH A 154 654 148 HOH HOH . H 4 HOH A 155 655 170 HOH HOH . H 4 HOH A 156 656 121 HOH HOH . H 4 HOH A 157 657 149 HOH HOH . H 4 HOH A 158 658 93 HOH HOH . H 4 HOH A 159 659 168 HOH HOH . H 4 HOH A 160 660 91 HOH HOH . H 4 HOH A 161 661 117 HOH HOH . H 4 HOH A 162 662 144 HOH HOH . H 4 HOH A 163 663 139 HOH HOH . H 4 HOH A 164 664 143 HOH HOH . H 4 HOH A 165 665 104 HOH HOH . H 4 HOH A 166 666 150 HOH HOH . H 4 HOH A 167 667 116 HOH HOH . H 4 HOH A 168 668 166 HOH HOH . H 4 HOH A 169 669 145 HOH HOH . H 4 HOH A 170 670 80 HOH HOH . H 4 HOH A 171 671 89 HOH HOH . H 4 HOH A 172 672 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OBW . . . B 2 60.021 1.319 -4.406 1 25.9 ? N1 OBW 401 A 1 HETATM 2 C C2 OBW . . . B 2 61.092 1.469 -3.62 1 26.98 ? C2 OBW 401 A 1 HETATM 3 C C4 OBW . . . B 2 62.47 0.303 -5.182 1 26.65 ? C4 OBW 401 A 1 HETATM 4 C C5 OBW . . . B 2 63.838 -0.064 -5.393 1 27.16 ? C5 OBW 401 A 1 HETATM 5 C C6 OBW . . . B 2 64.689 0.325 -4.422 1 27.88 ? C6 OBW 401 A 1 HETATM 6 O O1 OBW . . . B 2 59.896 4.013 -0.131 1 35.43 ? O1 OBW 401 A 1 HETATM 7 C C OBW . . . B 2 59.013 3.734 -0.924 1 34.67 ? C OBW 401 A 1 HETATM 8 O O OBW . . . B 2 57.823 4.291 -0.907 1 34.65 ? O OBW 401 A 1 HETATM 9 C C1 OBW . . . B 2 59.216 2.739 -2.042 1 33.52 ? C1 OBW 401 A 1 HETATM 10 S S OBW . . . B 2 61.002 2.408 -2.146 1 29.91 ? S OBW 401 A 1 HETATM 11 C C15 OBW . . . B 2 60.244 0.652 -5.543 1 25.83 ? C15 OBW 401 A 1 HETATM 12 N N OBW . . . B 2 61.388 0.113 -5.988 1 25.59 ? N OBW 401 A 1 HETATM 13 S S2 OBW . . . B 2 63.871 1.167 -3.131 1 28.74 ? S2 OBW 401 A 1 HETATM 14 C C3 OBW . . . B 2 62.356 0.979 -3.971 1 24.72 ? C3 OBW 401 A 1 HETATM 15 C C7 OBW . . . B 2 66.139 0.176 -4.4 1 29.64 ? C7 OBW 401 A 1 HETATM 16 S S1 OBW . . . B 2 66.959 -0.625 -5.733 1 38.22 ? S1 OBW 401 A 1 HETATM 17 C C14 OBW . . . B 2 68.46 -0.576 -4.886 1 37.23 ? C14 OBW 401 A 1 HETATM 18 C C9 OBW . . . B 2 68.355 0.064 -3.645 1 34.48 ? C9 OBW 401 A 1 HETATM 19 C C8 OBW . . . B 2 66.993 0.509 -3.406 1 31.05 ? C8 OBW 401 A 1 HETATM 20 C C13 OBW . . . B 2 69.665 -1.134 -5.31 1 41.27 ? C13 OBW 401 A 1 HETATM 21 C C12 OBW . . . B 2 70.777 -1.058 -4.486 1 40 ? C12 OBW 401 A 1 HETATM 22 C C11 OBW . . . B 2 70.697 -0.422 -3.264 1 39.52 ? C11 OBW 401 A 1 HETATM 23 C C10 OBW . . . B 2 69.5 0.141 -2.843 1 39.18 ? C10 OBW 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #