data_6Y6H # _model_server_result.job_id Qf3oc3w-op4kX0yi6xjt3Q _model_server_result.datetime_utc '2024-10-11 09:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6Y6H # _exptl.entry_id 6Y6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y6H _cell.length_a 83.599 _cell.length_b 83.599 _cell.length_c 114.609 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6Y6H _atom_sites.fract_transf_matrix[1][1] 0.011962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OBW A 1 401 1 OBW YYY . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 4 HOH A 1 501 41 HOH HOH . H 4 HOH A 2 502 171 HOH HOH . H 4 HOH A 3 503 8 HOH HOH . H 4 HOH A 4 504 162 HOH HOH . H 4 HOH A 5 505 130 HOH HOH . H 4 HOH A 6 506 120 HOH HOH . H 4 HOH A 7 507 173 HOH HOH . H 4 HOH A 8 508 165 HOH HOH . H 4 HOH A 9 509 127 HOH HOH . H 4 HOH A 10 510 60 HOH HOH . H 4 HOH A 11 511 75 HOH HOH . H 4 HOH A 12 512 115 HOH HOH . H 4 HOH A 13 513 159 HOH HOH . H 4 HOH A 14 514 18 HOH HOH . H 4 HOH A 15 515 69 HOH HOH . H 4 HOH A 16 516 30 HOH HOH . H 4 HOH A 17 517 44 HOH HOH . H 4 HOH A 18 518 157 HOH HOH . H 4 HOH A 19 519 181 HOH HOH . H 4 HOH A 20 520 5 HOH HOH . H 4 HOH A 21 521 14 HOH HOH . H 4 HOH A 22 522 17 HOH HOH . H 4 HOH A 23 523 94 HOH HOH . H 4 HOH A 24 524 85 HOH HOH . H 4 HOH A 25 525 70 HOH HOH . H 4 HOH A 26 526 90 HOH HOH . H 4 HOH A 27 527 29 HOH HOH . H 4 HOH A 28 528 98 HOH HOH . H 4 HOH A 29 529 102 HOH HOH . H 4 HOH A 30 530 81 HOH HOH . H 4 HOH A 31 531 137 HOH HOH . H 4 HOH A 32 532 86 HOH HOH . H 4 HOH A 33 533 49 HOH HOH . H 4 HOH A 34 534 106 HOH HOH . H 4 HOH A 35 535 126 HOH HOH . H 4 HOH A 36 536 72 HOH HOH . H 4 HOH A 37 537 129 HOH HOH . H 4 HOH A 38 538 73 HOH HOH . H 4 HOH A 39 539 59 HOH HOH . H 4 HOH A 40 540 11 HOH HOH . H 4 HOH A 41 541 178 HOH HOH . H 4 HOH A 42 542 180 HOH HOH . H 4 HOH A 43 543 67 HOH HOH . H 4 HOH A 44 544 112 HOH HOH . H 4 HOH A 45 545 68 HOH HOH . H 4 HOH A 46 546 163 HOH HOH . H 4 HOH A 47 547 24 HOH HOH . H 4 HOH A 48 548 31 HOH HOH . H 4 HOH A 49 549 52 HOH HOH . H 4 HOH A 50 550 55 HOH HOH . H 4 HOH A 51 551 161 HOH HOH . H 4 HOH A 52 552 179 HOH HOH . H 4 HOH A 53 553 33 HOH HOH . H 4 HOH A 54 554 108 HOH HOH . H 4 HOH A 55 555 100 HOH HOH . H 4 HOH A 56 556 53 HOH HOH . H 4 HOH A 57 557 64 HOH HOH . H 4 HOH A 58 558 58 HOH HOH . H 4 HOH A 59 559 25 HOH HOH . H 4 HOH A 60 560 9 HOH HOH . H 4 HOH A 61 561 36 HOH HOH . H 4 HOH A 62 562 153 HOH HOH . H 4 HOH A 63 563 56 HOH HOH . H 4 HOH A 64 564 134 HOH HOH . H 4 HOH A 65 565 96 HOH HOH . H 4 HOH A 66 566 57 HOH HOH . H 4 HOH A 67 567 43 HOH HOH . H 4 HOH A 68 568 37 HOH HOH . H 4 HOH A 69 569 66 HOH HOH . H 4 HOH A 70 570 84 HOH HOH . H 4 HOH A 71 571 110 HOH HOH . H 4 HOH A 72 572 92 HOH HOH . H 4 HOH A 73 573 164 HOH HOH . H 4 HOH A 74 574 1 HOH HOH . H 4 HOH A 75 575 7 HOH HOH . H 4 HOH A 76 576 35 HOH HOH . H 4 HOH A 77 577 34 HOH HOH . H 4 HOH A 78 578 28 HOH HOH . H 4 HOH A 79 579 15 HOH HOH . H 4 HOH A 80 580 82 HOH HOH . H 4 HOH A 81 581 61 HOH HOH . H 4 HOH A 82 582 107 HOH HOH . H 4 HOH A 83 583 169 HOH HOH . H 4 HOH A 84 584 155 HOH HOH . H 4 HOH A 85 585 103 HOH HOH . H 4 HOH A 86 586 45 HOH HOH . H 4 HOH A 87 587 95 HOH HOH . H 4 HOH A 88 588 13 HOH HOH . H 4 HOH A 89 589 54 HOH HOH . H 4 HOH A 90 590 19 HOH HOH . H 4 HOH A 91 591 16 HOH HOH . H 4 HOH A 92 592 79 HOH HOH . H 4 HOH A 93 593 174 HOH HOH . H 4 HOH A 94 594 22 HOH HOH . H 4 HOH A 95 595 47 HOH HOH . H 4 HOH A 96 596 50 HOH HOH . H 4 HOH A 97 597 65 HOH HOH . H 4 HOH A 98 598 42 HOH HOH . H 4 HOH A 99 599 182 HOH HOH . H 4 HOH A 100 600 78 HOH HOH . H 4 HOH A 101 601 118 HOH HOH . H 4 HOH A 102 602 105 HOH HOH . H 4 HOH A 103 603 12 HOH HOH . H 4 HOH A 104 604 113 HOH HOH . H 4 HOH A 105 605 62 HOH HOH . H 4 HOH A 106 606 99 HOH HOH . H 4 HOH A 107 607 128 HOH HOH . H 4 HOH A 108 608 101 HOH HOH . H 4 HOH A 109 609 119 HOH HOH . H 4 HOH A 110 610 88 HOH HOH . H 4 HOH A 111 611 132 HOH HOH . H 4 HOH A 112 612 77 HOH HOH . H 4 HOH A 113 613 32 HOH HOH . H 4 HOH A 114 614 177 HOH HOH . H 4 HOH A 115 615 114 HOH HOH . H 4 HOH A 116 616 26 HOH HOH . H 4 HOH A 117 617 140 HOH HOH . H 4 HOH A 118 618 48 HOH HOH . H 4 HOH A 119 619 21 HOH HOH . H 4 HOH A 120 620 122 HOH HOH . H 4 HOH A 121 621 46 HOH HOH . H 4 HOH A 122 622 51 HOH HOH . H 4 HOH A 123 623 147 HOH HOH . H 4 HOH A 124 624 131 HOH HOH . H 4 HOH A 125 625 40 HOH HOH . H 4 HOH A 126 626 71 HOH HOH . H 4 HOH A 127 627 83 HOH HOH . H 4 HOH A 128 628 23 HOH HOH . H 4 HOH A 129 629 176 HOH HOH . H 4 HOH A 130 630 63 HOH HOH . H 4 HOH A 131 631 109 HOH HOH . H 4 HOH A 132 632 20 HOH HOH . H 4 HOH A 133 633 38 HOH HOH . H 4 HOH A 134 634 27 HOH HOH . H 4 HOH A 135 635 2 HOH HOH . H 4 HOH A 136 636 152 HOH HOH . H 4 HOH A 137 637 172 HOH HOH . H 4 HOH A 138 638 76 HOH HOH . H 4 HOH A 139 639 4 HOH HOH . H 4 HOH A 140 640 97 HOH HOH . H 4 HOH A 141 641 10 HOH HOH . H 4 HOH A 142 642 74 HOH HOH . H 4 HOH A 143 643 183 HOH HOH . H 4 HOH A 144 644 175 HOH HOH . H 4 HOH A 145 645 142 HOH HOH . H 4 HOH A 146 646 39 HOH HOH . H 4 HOH A 147 647 138 HOH HOH . H 4 HOH A 148 648 184 HOH HOH . H 4 HOH A 149 649 167 HOH HOH . H 4 HOH A 150 650 160 HOH HOH . H 4 HOH A 151 651 154 HOH HOH . H 4 HOH A 152 652 158 HOH HOH . H 4 HOH A 153 653 141 HOH HOH . H 4 HOH A 154 654 148 HOH HOH . H 4 HOH A 155 655 170 HOH HOH . H 4 HOH A 156 656 121 HOH HOH . H 4 HOH A 157 657 149 HOH HOH . H 4 HOH A 158 658 93 HOH HOH . H 4 HOH A 159 659 168 HOH HOH . H 4 HOH A 160 660 91 HOH HOH . H 4 HOH A 161 661 117 HOH HOH . H 4 HOH A 162 662 144 HOH HOH . H 4 HOH A 163 663 139 HOH HOH . H 4 HOH A 164 664 143 HOH HOH . H 4 HOH A 165 665 104 HOH HOH . H 4 HOH A 166 666 150 HOH HOH . H 4 HOH A 167 667 116 HOH HOH . H 4 HOH A 168 668 166 HOH HOH . H 4 HOH A 169 669 145 HOH HOH . H 4 HOH A 170 670 80 HOH HOH . H 4 HOH A 171 671 89 HOH HOH . H 4 HOH A 172 672 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 59.031 -7.067 6.402 1 51.06 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 3 59.23 -6.181 7.49 1 52.77 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 3 60.25 -7.813 6.045 1 53.88 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 3 61.38 -6.981 5.831 1 51.5 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #