data_6Y6N # _model_server_result.job_id OYQgJJOJ6wO_TjZMhNU4AQ _model_server_result.datetime_utc '2024-10-19 10:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6Y6N # _exptl.entry_id 6Y6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-3,4-dimethyl-3-propyl-1~{H}-1,4-benzodiazepine-2,5-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y6N _cell.length_a 64.253 _cell.length_b 96.951 _cell.length_c 120.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 314 1_555 A SG CYS 12 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 11 A CYS 321 1_555 A SG CYS 81 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 40 A CYS 350 1_555 A SG CYS 113 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 44 A CYS 354 1_555 A SG CYS 115 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 80 A CYS 390 1_555 B SG CYS 80 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 B SG CYS 4 B CYS 314 1_555 B SG CYS 12 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 11 B CYS 321 1_555 B SG CYS 81 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 40 B CYS 350 1_555 B SG CYS 113 B CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 44 B CYS 354 1_555 B SG CYS 115 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C14 H18 N2 O2' _chem_comp.formula_weight 246.305 _chem_comp.id ODQ _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-3,4-dimethyl-3-propyl-1~{H}-1,4-benzodiazepine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C7 ODQ doub 237 n n C9 C8 ODQ sing 238 n n C7 N ODQ sing 239 n n C7 C8 ODQ sing 240 n n N C6 ODQ sing 241 n n C8 C10 ODQ sing 242 n n C8 N1 ODQ sing 243 n n C13 N1 ODQ sing 244 n n C10 C11 ODQ sing 245 n n N1 C ODQ sing 246 n n C6 C5 ODQ doub 247 n y C6 C1 ODQ sing 248 n y C5 C4 ODQ sing 249 n y C11 C12 ODQ sing 250 n n C C1 ODQ sing 251 n n C O ODQ doub 252 n n C1 C2 ODQ doub 253 n y C4 C3 ODQ doub 254 n y C2 C3 ODQ sing 255 n y C9 H1 ODQ sing 256 n n C9 H2 ODQ sing 257 n n C9 H3 ODQ sing 258 n n C10 H4 ODQ sing 259 n n C10 H5 ODQ sing 260 n n C11 H6 ODQ sing 261 n n C11 H7 ODQ sing 262 n n C12 H8 ODQ sing 263 n n C12 H9 ODQ sing 264 n n C12 H10 ODQ sing 265 n n C13 H11 ODQ sing 266 n n C13 H12 ODQ sing 267 n n C13 H13 ODQ sing 268 n n N H14 ODQ sing 269 n n C5 H15 ODQ sing 270 n n C4 H16 ODQ sing 271 n n C3 H17 ODQ sing 272 n n C2 H18 ODQ sing 273 n n # _atom_sites.entry_id 6Y6N _atom_sites.fract_transf_matrix[1][1] 0.015563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ODQ A 1 501 1 ODQ 072 . D 3 SO4 A 1 502 1 SO4 SO4 . E 3 SO4 A 1 503 2 SO4 SO4 . F 3 SO4 A 1 504 3 SO4 SO4 . G 3 SO4 A 1 505 4 SO4 SO4 . H 4 HOH A 1 601 45 HOH HOH . H 4 HOH A 2 602 14 HOH HOH . H 4 HOH A 3 603 17 HOH HOH . H 4 HOH A 4 604 2 HOH HOH . H 4 HOH A 5 605 3 HOH HOH . H 4 HOH A 6 606 13 HOH HOH . H 4 HOH A 7 607 15 HOH HOH . H 4 HOH A 8 608 1 HOH HOH . H 4 HOH A 9 609 4 HOH HOH . H 4 HOH A 10 610 7 HOH HOH . H 4 HOH A 11 611 16 HOH HOH . H 4 HOH A 12 612 23 HOH HOH . H 4 HOH A 13 613 30 HOH HOH . H 4 HOH A 14 614 22 HOH HOH . H 4 HOH A 15 615 29 HOH HOH . H 4 HOH A 16 616 44 HOH HOH . H 4 HOH A 17 617 8 HOH HOH . H 4 HOH A 18 618 27 HOH HOH . H 4 HOH A 19 619 5 HOH HOH . H 4 HOH A 20 620 25 HOH HOH . H 4 HOH A 21 621 26 HOH HOH . H 4 HOH A 22 622 31 HOH HOH . H 4 HOH A 23 623 6 HOH HOH . H 4 HOH A 24 624 24 HOH HOH . H 4 HOH A 25 625 9 HOH HOH . H 4 HOH A 26 626 18 HOH HOH . H 4 HOH A 27 627 10 HOH HOH . H 4 HOH A 28 628 11 HOH HOH . H 4 HOH A 29 629 12 HOH HOH . I 4 HOH B 1 501 42 HOH HOH . I 4 HOH B 2 502 32 HOH HOH . I 4 HOH B 3 503 33 HOH HOH . I 4 HOH B 4 504 37 HOH HOH . I 4 HOH B 5 505 19 HOH HOH . I 4 HOH B 6 506 43 HOH HOH . I 4 HOH B 7 507 40 HOH HOH . I 4 HOH B 8 508 35 HOH HOH . I 4 HOH B 9 509 28 HOH HOH . I 4 HOH B 10 510 34 HOH HOH . I 4 HOH B 11 511 36 HOH HOH . I 4 HOH B 12 512 41 HOH HOH . I 4 HOH B 13 513 20 HOH HOH . I 4 HOH B 14 514 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 ODQ . . . C 2 35.035 8.222 140.868 1 87.67 ? O1 ODQ 501 A 1 HETATM 2 C C7 ODQ . . . C 2 35.587 7.905 141.911 1 86.7 ? C7 ODQ 501 A 1 HETATM 3 C C8 ODQ . . . C 2 36.571 8.858 142.617 1 87.04 ? C8 ODQ 501 A 1 HETATM 4 C C9 ODQ . . . C 2 37.334 9.513 141.466 1 86.87 ? C9 ODQ 501 A 1 HETATM 5 C C10 ODQ . . . C 2 35.892 10.08 143.277 1 85.53 ? C10 ODQ 501 A 1 HETATM 6 C C11 ODQ . . . C 2 34.789 9.794 144.288 1 83.97 ? C11 ODQ 501 A 1 HETATM 7 C C12 ODQ . . . C 2 34.521 10.964 145.202 1 82.46 ? C12 ODQ 501 A 1 HETATM 8 N N1 ODQ . . . C 2 37.508 8.015 143.564 1 89.85 ? N1 ODQ 501 A 1 HETATM 9 C C13 ODQ . . . C 2 38.727 7.461 142.976 1 90.86 ? C13 ODQ 501 A 1 HETATM 10 C C ODQ . . . C 2 37.121 7.55 144.778 1 89.95 ? C ODQ 501 A 1 HETATM 11 O O ODQ . . . C 2 37.779 7.792 145.777 1 90.54 ? O ODQ 501 A 1 HETATM 12 N N ODQ . . . C 2 35.343 6.684 142.449 1 86.03 ? N ODQ 501 A 1 HETATM 13 C C6 ODQ . . . C 2 35.054 6.347 143.793 1 87.42 ? C6 ODQ 501 A 1 HETATM 14 C C1 ODQ . . . C 2 35.877 6.72 144.884 1 88.71 ? C1 ODQ 501 A 1 HETATM 15 C C5 ODQ . . . C 2 33.869 5.651 144.032 1 87.28 ? C5 ODQ 501 A 1 HETATM 16 C C4 ODQ . . . C 2 33.499 5.331 145.33 1 87.53 ? C4 ODQ 501 A 1 HETATM 17 C C3 ODQ . . . C 2 34.302 5.69 146.396 1 87.43 ? C3 ODQ 501 A 1 HETATM 18 C C2 ODQ . . . C 2 35.486 6.375 146.181 1 87.7 ? C2 ODQ 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 18 #