data_6Y76
#
_model_server_result.job_id            CXvarwUylx0ktOmahfiESw 
_model_server_result.datetime_utc      '2025-07-01 23:44:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6Y76 
#
_exptl.entry_id    6Y76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.249 
_cell.angle_gamma         90 
_cell.entry_id            6Y76 
_cell.length_a            33.122 
_cell.length_b            119.558 
_cell.length_c            33.167 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 131 A CYS 131 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 131 B CYS 131 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A OG1 THR 53 A THR 53 1_555 C NA NA . A NA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc2 C NA NA . A NA 201 1_555 F O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc3 F O HOH . A HOH 400 1_455 E NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc4 D NA NA . B NA 201 1_555 G O HOH . B HOH 372 1_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6Y76 
_atom_sites.fract_transf_matrix[1][1]    0.030191 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.012351 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.032576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 201 2 NA NA . 
D 2 NA B 1 201 1 NA NA . 
E 2 NA B 1 202 3 NA NA . 
F 3 HOH A 1 301 192 HOH HOH . 
F 3 HOH A 2 302 211 HOH HOH . 
F 3 HOH A 3 303 55 HOH HOH . 
F 3 HOH A 4 304 15 HOH HOH . 
F 3 HOH A 5 305 43 HOH HOH . 
F 3 HOH A 6 306 102 HOH HOH . 
F 3 HOH A 7 307 47 HOH HOH . 
F 3 HOH A 8 308 165 HOH HOH . 
F 3 HOH A 9 309 171 HOH HOH . 
F 3 HOH A 10 310 42 HOH HOH . 
F 3 HOH A 11 311 46 HOH HOH . 
F 3 HOH A 12 312 116 HOH HOH . 
F 3 HOH A 13 313 1 HOH HOH . 
F 3 HOH A 14 314 164 HOH HOH . 
F 3 HOH A 15 315 148 HOH HOH . 
F 3 HOH A 16 316 88 HOH HOH . 
F 3 HOH A 17 317 18 HOH HOH . 
F 3 HOH A 18 318 206 HOH HOH . 
F 3 HOH A 19 319 48 HOH HOH . 
F 3 HOH A 20 320 52 HOH HOH . 
F 3 HOH A 21 321 143 HOH HOH . 
F 3 HOH A 22 322 89 HOH HOH . 
F 3 HOH A 23 323 82 HOH HOH . 
F 3 HOH A 24 324 64 HOH HOH . 
F 3 HOH A 25 325 10 HOH HOH . 
F 3 HOH A 26 326 31 HOH HOH . 
F 3 HOH A 27 327 77 HOH HOH . 
F 3 HOH A 28 328 2 HOH HOH . 
F 3 HOH A 29 329 101 HOH HOH . 
F 3 HOH A 30 330 12 HOH HOH . 
F 3 HOH A 31 331 37 HOH HOH . 
F 3 HOH A 32 332 87 HOH HOH . 
F 3 HOH A 33 333 21 HOH HOH . 
F 3 HOH A 34 334 166 HOH HOH . 
F 3 HOH A 35 335 20 HOH HOH . 
F 3 HOH A 36 336 51 HOH HOH . 
F 3 HOH A 37 337 133 HOH HOH . 
F 3 HOH A 38 338 100 HOH HOH . 
F 3 HOH A 39 339 17 HOH HOH . 
F 3 HOH A 40 340 14 HOH HOH . 
F 3 HOH A 41 341 95 HOH HOH . 
F 3 HOH A 42 342 29 HOH HOH . 
F 3 HOH A 43 343 54 HOH HOH . 
F 3 HOH A 44 344 4 HOH HOH . 
F 3 HOH A 45 345 161 HOH HOH . 
F 3 HOH A 46 346 86 HOH HOH . 
F 3 HOH A 47 347 169 HOH HOH . 
F 3 HOH A 48 348 13 HOH HOH . 
F 3 HOH A 49 349 108 HOH HOH . 
F 3 HOH A 50 350 92 HOH HOH . 
F 3 HOH A 51 351 79 HOH HOH . 
F 3 HOH A 52 352 222 HOH HOH . 
F 3 HOH A 53 353 217 HOH HOH . 
F 3 HOH A 54 354 59 HOH HOH . 
F 3 HOH A 55 355 32 HOH HOH . 
F 3 HOH A 56 356 66 HOH HOH . 
F 3 HOH A 57 357 36 HOH HOH . 
F 3 HOH A 58 358 60 HOH HOH . 
F 3 HOH A 59 359 198 HOH HOH . 
F 3 HOH A 60 360 94 HOH HOH . 
F 3 HOH A 61 361 179 HOH HOH . 
F 3 HOH A 62 362 39 HOH HOH . 
F 3 HOH A 63 363 63 HOH HOH . 
F 3 HOH A 64 364 187 HOH HOH . 
F 3 HOH A 65 365 213 HOH HOH . 
F 3 HOH A 66 366 147 HOH HOH . 
F 3 HOH A 67 367 197 HOH HOH . 
F 3 HOH A 68 368 67 HOH HOH . 
F 3 HOH A 69 369 158 HOH HOH . 
F 3 HOH A 70 370 173 HOH HOH . 
F 3 HOH A 71 371 188 HOH HOH . 
F 3 HOH A 72 372 151 HOH HOH . 
F 3 HOH A 73 373 81 HOH HOH . 
F 3 HOH A 74 374 196 HOH HOH . 
F 3 HOH A 75 375 201 HOH HOH . 
F 3 HOH A 76 376 162 HOH HOH . 
F 3 HOH A 77 377 160 HOH HOH . 
F 3 HOH A 78 378 93 HOH HOH . 
F 3 HOH A 79 379 78 HOH HOH . 
F 3 HOH A 80 380 142 HOH HOH . 
F 3 HOH A 81 381 44 HOH HOH . 
F 3 HOH A 82 382 181 HOH HOH . 
F 3 HOH A 83 383 223 HOH HOH . 
F 3 HOH A 84 384 176 HOH HOH . 
F 3 HOH A 85 385 225 HOH HOH . 
F 3 HOH A 86 386 186 HOH HOH . 
F 3 HOH A 87 387 119 HOH HOH . 
F 3 HOH A 88 388 127 HOH HOH . 
F 3 HOH A 89 389 218 HOH HOH . 
F 3 HOH A 90 390 135 HOH HOH . 
F 3 HOH A 91 391 193 HOH HOH . 
F 3 HOH A 92 392 120 HOH HOH . 
F 3 HOH A 93 393 208 HOH HOH . 
F 3 HOH A 94 394 178 HOH HOH . 
F 3 HOH A 95 395 136 HOH HOH . 
F 3 HOH A 96 396 168 HOH HOH . 
F 3 HOH A 97 397 207 HOH HOH . 
F 3 HOH A 98 398 163 HOH HOH . 
F 3 HOH A 99 399 80 HOH HOH . 
F 3 HOH A 100 400 182 HOH HOH . 
F 3 HOH A 101 401 226 HOH HOH . 
F 3 HOH A 102 402 227 HOH HOH . 
F 3 HOH A 103 403 183 HOH HOH . 
F 3 HOH A 104 404 139 HOH HOH . 
F 3 HOH A 105 405 50 HOH HOH . 
F 3 HOH A 106 406 180 HOH HOH . 
F 3 HOH A 107 407 61 HOH HOH . 
F 3 HOH A 108 408 75 HOH HOH . 
F 3 HOH A 109 409 167 HOH HOH . 
F 3 HOH A 110 410 144 HOH HOH . 
G 3 HOH B 1 301 129 HOH HOH . 
G 3 HOH B 2 302 221 HOH HOH . 
G 3 HOH B 3 303 110 HOH HOH . 
G 3 HOH B 4 304 72 HOH HOH . 
G 3 HOH B 5 305 38 HOH HOH . 
G 3 HOH B 6 306 41 HOH HOH . 
G 3 HOH B 7 307 62 HOH HOH . 
G 3 HOH B 8 308 150 HOH HOH . 
G 3 HOH B 9 309 215 HOH HOH . 
G 3 HOH B 10 310 45 HOH HOH . 
G 3 HOH B 11 311 23 HOH HOH . 
G 3 HOH B 12 312 6 HOH HOH . 
G 3 HOH B 13 313 156 HOH HOH . 
G 3 HOH B 14 314 184 HOH HOH . 
G 3 HOH B 15 315 57 HOH HOH . 
G 3 HOH B 16 316 219 HOH HOH . 
G 3 HOH B 17 317 177 HOH HOH . 
G 3 HOH B 18 318 33 HOH HOH . 
G 3 HOH B 19 319 74 HOH HOH . 
G 3 HOH B 20 320 174 HOH HOH . 
G 3 HOH B 21 321 73 HOH HOH . 
G 3 HOH B 22 322 16 HOH HOH . 
G 3 HOH B 23 323 35 HOH HOH . 
G 3 HOH B 24 324 71 HOH HOH . 
G 3 HOH B 25 325 3 HOH HOH . 
G 3 HOH B 26 326 149 HOH HOH . 
G 3 HOH B 27 327 200 HOH HOH . 
G 3 HOH B 28 328 83 HOH HOH . 
G 3 HOH B 29 329 105 HOH HOH . 
G 3 HOH B 30 330 84 HOH HOH . 
G 3 HOH B 31 331 214 HOH HOH . 
G 3 HOH B 32 332 212 HOH HOH . 
G 3 HOH B 33 333 11 HOH HOH . 
G 3 HOH B 34 334 19 HOH HOH . 
G 3 HOH B 35 335 115 HOH HOH . 
G 3 HOH B 36 336 30 HOH HOH . 
G 3 HOH B 37 337 85 HOH HOH . 
G 3 HOH B 38 338 34 HOH HOH . 
G 3 HOH B 39 339 125 HOH HOH . 
G 3 HOH B 40 340 121 HOH HOH . 
G 3 HOH B 41 341 118 HOH HOH . 
G 3 HOH B 42 342 103 HOH HOH . 
G 3 HOH B 43 343 25 HOH HOH . 
G 3 HOH B 44 344 7 HOH HOH . 
G 3 HOH B 45 345 53 HOH HOH . 
G 3 HOH B 46 346 137 HOH HOH . 
G 3 HOH B 47 347 90 HOH HOH . 
G 3 HOH B 48 348 9 HOH HOH . 
G 3 HOH B 49 349 97 HOH HOH . 
G 3 HOH B 50 350 40 HOH HOH . 
G 3 HOH B 51 351 5 HOH HOH . 
G 3 HOH B 52 352 141 HOH HOH . 
G 3 HOH B 53 353 220 HOH HOH . 
G 3 HOH B 54 354 204 HOH HOH . 
G 3 HOH B 55 355 122 HOH HOH . 
G 3 HOH B 56 356 70 HOH HOH . 
G 3 HOH B 57 357 128 HOH HOH . 
G 3 HOH B 58 358 8 HOH HOH . 
G 3 HOH B 59 359 76 HOH HOH . 
G 3 HOH B 60 360 68 HOH HOH . 
G 3 HOH B 61 361 107 HOH HOH . 
G 3 HOH B 62 362 91 HOH HOH . 
G 3 HOH B 63 363 111 HOH HOH . 
G 3 HOH B 64 364 49 HOH HOH . 
G 3 HOH B 65 365 157 HOH HOH . 
G 3 HOH B 66 366 106 HOH HOH . 
G 3 HOH B 67 367 113 HOH HOH . 
G 3 HOH B 68 368 27 HOH HOH . 
G 3 HOH B 69 369 202 HOH HOH . 
G 3 HOH B 70 370 224 HOH HOH . 
G 3 HOH B 71 371 199 HOH HOH . 
G 3 HOH B 72 372 99 HOH HOH . 
G 3 HOH B 73 373 228 HOH HOH . 
G 3 HOH B 74 374 131 HOH HOH . 
G 3 HOH B 75 375 155 HOH HOH . 
G 3 HOH B 76 376 153 HOH HOH . 
G 3 HOH B 77 377 152 HOH HOH . 
G 3 HOH B 78 378 96 HOH HOH . 
G 3 HOH B 79 379 69 HOH HOH . 
G 3 HOH B 80 380 154 HOH HOH . 
G 3 HOH B 81 381 185 HOH HOH . 
G 3 HOH B 82 382 138 HOH HOH . 
G 3 HOH B 83 383 117 HOH HOH . 
G 3 HOH B 84 384 58 HOH HOH . 
G 3 HOH B 85 385 134 HOH HOH . 
G 3 HOH B 86 386 210 HOH HOH . 
G 3 HOH B 87 387 146 HOH HOH . 
G 3 HOH B 88 388 172 HOH HOH . 
G 3 HOH B 89 389 195 HOH HOH . 
G 3 HOH B 90 390 132 HOH HOH . 
G 3 HOH B 91 391 194 HOH HOH . 
G 3 HOH B 92 392 112 HOH HOH . 
G 3 HOH B 93 393 114 HOH HOH . 
G 3 HOH B 94 394 145 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               8.658 
_atom_site.Cartn_y               14.864 
_atom_site.Cartn_z               20.813 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.83 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           1 
#