data_6Y7B # _model_server_result.job_id R9r1s6iyxkgA0II4i8Be7A _model_server_result.datetime_utc '2025-07-21 10:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6Y7B # _exptl.entry_id 6Y7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.266 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]-2-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)-10,10-dimethyl-anthracen-9-yl]benzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Y7B _cell.length_a 161.27 _cell.length_b 161.27 _cell.length_c 124.66 _cell.Z_PDB 30 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G 1 1 B,H,I 2 1 C,J,K 3 1 D,L,M 4 1 E,N,O 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OD2 ASP 104 A ASP 106 1_555 F C24 OEK . A OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 B OD2 ASP 104 B ASP 106 1_555 H C24 OEK . B OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 C OD2 ASP 104 C ASP 106 1_555 J C24 OEK . C OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale4 D OD2 ASP 104 D ASP 106 1_555 L C24 OEK . D OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale5 E OD2 ASP 104 E ASP 106 1_555 N C24 OEK . E OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'C38 H49 Cl N3 O5 1' _chem_comp.formula_weight 663.266 _chem_comp.id OEK _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]-2-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)-10,10-dimethyl-anthracen-9-yl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 OEK sing 235 n n C23 C22 OEK sing 236 n n C18 C17 OEK sing 237 n n C18 O1 OEK sing 238 n n C21 C22 OEK sing 239 n n C21 C20 OEK sing 240 n n O C17 OEK sing 241 n n O C16 OEK sing 242 n n O1 C19 OEK sing 243 n n C15 C16 OEK sing 244 n n C15 N1 OEK sing 245 n n C19 C20 OEK sing 246 n n N1 C14 OEK sing 247 n n C25 C26 OEK doub 248 n y C25 C13 OEK sing 249 n y C14 O2 OEK doub 250 n n C14 C13 OEK sing 251 n n C26 C27 OEK sing 252 n y C13 C12 OEK doub 253 n y O3 C28 OEK doub 254 n n C27 C28 OEK sing 255 n n C27 C11 OEK doub 256 n y C12 C11 OEK sing 257 n y C28 O4 OEK sing 258 n n C11 C10 OEK sing 259 n n C30 C31 OEK doub 260 n n C30 C29 OEK sing 261 n n C10 C29 OEK doub 262 n n C10 C9 OEK sing 263 n n C8 C9 OEK doub 264 n y C8 C7 OEK sing 265 n y C31 C35 OEK sing 266 n n C29 C33 OEK sing 267 n n C9 C2 OEK sing 268 n y C7 C4 OEK doub 269 n y C36 N2 OEK sing 270 n n C35 N2 OEK doub 271 n n C35 C34 OEK sing 272 n n C33 C34 OEK doub 273 n n C33 C1 OEK sing 274 n n C2 C3 OEK doub 275 n y C2 C1 OEK sing 276 n n C4 C3 OEK sing 277 n y C4 N OEK sing 278 n n N2 C37 OEK sing 279 n n C6 N OEK sing 280 n n C1 C32 OEK sing 281 n n C1 C OEK sing 282 n n N C5 OEK sing 283 n n N1 H1 OEK sing 284 n n C3 H2 OEK sing 285 n n C5 H3 OEK sing 286 n n C5 H4 OEK sing 287 n n C5 H5 OEK sing 288 n n C6 H6 OEK sing 289 n n C6 H7 OEK sing 290 n n C6 H8 OEK sing 291 n n C H9 OEK sing 292 n n C H10 OEK sing 293 n n C H11 OEK sing 294 n n C12 H13 OEK sing 295 n n C15 H14 OEK sing 296 n n C15 H15 OEK sing 297 n n C16 H16 OEK sing 298 n n C16 H17 OEK sing 299 n n C17 H18 OEK sing 300 n n C17 H19 OEK sing 301 n n C18 H20 OEK sing 302 n n C18 H21 OEK sing 303 n n C19 H22 OEK sing 304 n n C19 H23 OEK sing 305 n n C20 H24 OEK sing 306 n n C20 H25 OEK sing 307 n n C21 H26 OEK sing 308 n n C21 H27 OEK sing 309 n n C22 H28 OEK sing 310 n n C22 H29 OEK sing 311 n n C23 H30 OEK sing 312 n n C23 H31 OEK sing 313 n n C24 H32 OEK sing 314 n n C24 H33 OEK sing 315 n n C25 H35 OEK sing 316 n n C26 H36 OEK sing 317 n n C30 H37 OEK sing 318 n n C31 H38 OEK sing 319 n n C32 H39 OEK sing 320 n n C32 H40 OEK sing 321 n n C32 H41 OEK sing 322 n n C34 H42 OEK sing 323 n n C36 H43 OEK sing 324 n n C36 H44 OEK sing 325 n n C36 H45 OEK sing 326 n n C37 H46 OEK sing 327 n n C37 H47 OEK sing 328 n n C37 H48 OEK sing 329 n n C7 H49 OEK sing 330 n n C8 H50 OEK sing 331 n n O4 H51 OEK sing 332 n n C24 CL1 OEK sing 333 n n # _atom_sites.entry_id 6Y7B _atom_sites.fract_transf_matrix[1][1] 0.006201 _atom_sites.fract_transf_matrix[1][2] 0.00358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 OEK A 1 301 303 OEK CPY . G 3 CL A 1 302 304 CL CL . H 2 OEK B 1 301 303 OEK CPY . I 3 CL B 1 302 304 CL CL . J 2 OEK C 1 301 303 OEK CPY . K 3 CL C 1 302 304 CL CL . L 2 OEK D 1 301 303 OEK CPY . M 3 CL D 1 302 304 CL CL . N 2 OEK E 1 301 303 OEK CPY . O 3 CL E 1 302 304 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OEK . . . F 2 -56.975 65.764 49.019 1 34.63 ? N OEK 301 A 1 HETATM 2 N N1 OEK . . . F 2 -60.379 60.715 40.55 1 35.6 ? N1 OEK 301 A 1 HETATM 3 C C2 OEK . . . F 2 -60.085 63.998 48.145 1 46.81 ? C2 OEK 301 A 1 HETATM 4 O O2 OEK . . . F 2 -59.32 60.059 42.419 1 33.53 ? O2 OEK 301 A 1 HETATM 5 C C3 OEK . . . F 2 -59.066 64.59 48.887 1 44.23 ? C3 OEK 301 A 1 HETATM 6 C C4 OEK . . . F 2 -57.962 65.191 48.275 1 34.27 ? C4 OEK 301 A 1 HETATM 7 C C5 OEK . . . F 2 -57.048 65.738 50.47 1 37.98 ? C5 OEK 301 A 1 HETATM 8 C C6 OEK . . . F 2 -56.219 66.88 48.477 1 25.51 ? C6 OEK 301 A 1 HETATM 9 C C OEK . . . F 2 -60.732 62.267 49.816 1 43.54 ? C OEK 301 A 1 HETATM 10 O O OEK . . . F 2 -60.976 57.302 39.331 1 43.81 ? O OEK 301 A 1 HETATM 11 C C1 OEK . . . F 2 -61.266 63.373 48.889 1 45.53 ? C1 OEK 301 A 1 HETATM 12 C C10 OEK . . . F 2 -61.071 63.39 45.951 1 49.58 ? C10 OEK 301 A 1 HETATM 13 C C11 OEK . . . F 2 -60.904 63.428 44.463 1 53.57 ? C11 OEK 301 A 1 HETATM 14 C C12 OEK . . . F 2 -60.575 62.233 43.814 1 46.78 ? C12 OEK 301 A 1 HETATM 15 C C13 OEK . . . F 2 -60.329 62.203 42.445 1 42.25 ? C13 OEK 301 A 1 HETATM 16 C C14 OEK . . . F 2 -59.961 60.906 41.803 1 35.71 ? C14 OEK 301 A 1 HETATM 17 C C15 OEK . . . F 2 -60.13 59.473 39.835 1 33.43 ? C15 OEK 301 A 1 HETATM 18 C C16 OEK . . . F 2 -61.222 58.473 40.091 1 41.18 ? C16 OEK 301 A 1 HETATM 19 C C17 OEK . . . F 2 -61.97 56.3 39.514 1 37.82 ? C17 OEK 301 A 1 HETATM 20 C C18 OEK . . . F 2 -61.538 55.047 38.821 1 35.31 ? C18 OEK 301 A 1 HETATM 21 C C19 OEK . . . F 2 -60.969 53.277 40.289 1 31.2 ? C19 OEK 301 A 1 HETATM 22 C C20 OEK . . . F 2 -59.813 52.337 40.518 1 30.95 ? C20 OEK 301 A 1 HETATM 23 C C21 OEK . . . F 2 -59.082 51.948 39.241 1 27.93 ? C21 OEK 301 A 1 HETATM 24 C C22 OEK . . . F 2 -58.037 50.862 39.441 1 24.45 ? C22 OEK 301 A 1 HETATM 25 C C23 OEK . . . F 2 -57.41 50.354 38.151 1 30.73 ? C23 OEK 301 A 1 HETATM 26 C C24 OEK . . . F 2 -56.634 49.067 38.33 1 33.24 ? C24 OEK 301 A 1 HETATM 27 C C25 OEK . . . F 2 -60.416 63.381 41.715 1 45.96 ? C25 OEK 301 A 1 HETATM 28 C C26 OEK . . . F 2 -60.745 64.571 42.336 1 46.2 ? C26 OEK 301 A 1 HETATM 29 C C27 OEK . . . F 2 -60.995 64.617 43.708 1 50.31 ? C27 OEK 301 A 1 HETATM 30 C C28 OEK . . . F 2 -61.334 65.984 44.256 1 47.68 ? C28 OEK 301 A 1 HETATM 31 C C29 OEK . . . F 2 -62.182 62.813 46.539 1 50.87 ? C29 OEK 301 A 1 HETATM 32 C C30 OEK . . . F 2 -63.213 62.252 45.747 1 40.83 ? C30 OEK 301 A 1 HETATM 33 C C31 OEK . . . F 2 -64.32 61.661 46.328 1 53.83 ? C31 OEK 301 A 1 HETATM 34 C C32 OEK . . . F 2 -61.936 64.456 49.753 1 37.15 ? C32 OEK 301 A 1 HETATM 35 C C33 OEK . . . F 2 -62.32 62.768 47.963 1 52.31 ? C33 OEK 301 A 1 HETATM 36 C C34 OEK . . . F 2 -63.445 62.161 48.518 1 41.71 ? C34 OEK 301 A 1 HETATM 37 C C35 OEK . . . F 2 -64.455 61.598 47.719 1 54.32 ? C35 OEK 301 A 1 HETATM 38 C C36 OEK . . . F 2 -66.604 60.428 47.462 1 43.16 ? C36 OEK 301 A 1 HETATM 39 C C37 OEK . . . F 2 -65.459 60.418 49.625 1 67.27 ? C37 OEK 301 A 1 HETATM 40 C C7 OEK . . . F 2 -57.891 65.179 46.886 1 27.9 ? C7 OEK 301 A 1 HETATM 41 C C8 OEK . . . F 2 -58.889 64.59 46.135 1 37.7 ? C8 OEK 301 A 1 HETATM 42 C C9 OEK . . . F 2 -59.993 64.001 46.746 1 45.87 ? C9 OEK 301 A 1 HETATM 43 N N2 OEK . . . F 2 -65.552 60.998 48.295 1 68.02 ? N2 OEK 301 A 1 HETATM 44 O O1 OEK . . . F 2 -60.511 54.411 39.57 1 38.4 ? O1 OEK 301 A 1 HETATM 45 O O3 OEK . . . F 2 -61.318 66.949 43.46 1 57.55 ? O3 OEK 301 A 1 HETATM 46 O O4 OEK . . . F 2 -61.591 66.094 45.484 1 44.61 ? O4 OEK 301 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #