data_6Y7B
#
_model_server_result.job_id            6hL7fdvRjj6MqSmQsFlLOg 
_model_server_result.datetime_utc      '2025-07-21 00:44:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y7b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    6Y7B 
#
_exptl.entry_id    6Y7B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.266 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]-2-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)-10,10-dimethyl-anthracen-9-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6Y7B 
_cell.length_a            161.27 
_cell.length_b            161.27 
_cell.length_c            124.66 
_cell.Z_PDB               30 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y7B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    'P 3 2"' 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G 1 1 
B,H,I 2 1 
C,J,K 3 1 
D,L,M 4 1 
E,N,O 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD2 ASP 104 A ASP 106 1_555 F C24 OEK . A OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale2 B OD2 ASP 104 B ASP 106 1_555 H C24 OEK . B OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale3 C OD2 ASP 104 C ASP 106 1_555 J C24 OEK . C OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale4 D OD2 ASP 104 D ASP 106 1_555 L C24 OEK . D OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale5 E OD2 ASP 104 E ASP 106 1_555 N C24 OEK . E OEK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
#
_chem_comp.formula           'C38 H49 Cl N3 O5 1' 
_chem_comp.formula_weight    663.266 
_chem_comp.id                OEK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]-2-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)-10,10-dimethyl-anthracen-9-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 OEK sing 235 n n 
C23 C22 OEK sing 236 n n 
C18 C17 OEK sing 237 n n 
C18 O1 OEK sing 238 n n 
C21 C22 OEK sing 239 n n 
C21 C20 OEK sing 240 n n 
O C17 OEK sing 241 n n 
O C16 OEK sing 242 n n 
O1 C19 OEK sing 243 n n 
C15 C16 OEK sing 244 n n 
C15 N1 OEK sing 245 n n 
C19 C20 OEK sing 246 n n 
N1 C14 OEK sing 247 n n 
C25 C26 OEK doub 248 n y 
C25 C13 OEK sing 249 n y 
C14 O2 OEK doub 250 n n 
C14 C13 OEK sing 251 n n 
C26 C27 OEK sing 252 n y 
C13 C12 OEK doub 253 n y 
O3 C28 OEK doub 254 n n 
C27 C28 OEK sing 255 n n 
C27 C11 OEK doub 256 n y 
C12 C11 OEK sing 257 n y 
C28 O4 OEK sing 258 n n 
C11 C10 OEK sing 259 n n 
C30 C31 OEK doub 260 n n 
C30 C29 OEK sing 261 n n 
C10 C29 OEK doub 262 n n 
C10 C9 OEK sing 263 n n 
C8 C9 OEK doub 264 n y 
C8 C7 OEK sing 265 n y 
C31 C35 OEK sing 266 n n 
C29 C33 OEK sing 267 n n 
C9 C2 OEK sing 268 n y 
C7 C4 OEK doub 269 n y 
C36 N2 OEK sing 270 n n 
C35 N2 OEK doub 271 n n 
C35 C34 OEK sing 272 n n 
C33 C34 OEK doub 273 n n 
C33 C1 OEK sing 274 n n 
C2 C3 OEK doub 275 n y 
C2 C1 OEK sing 276 n n 
C4 C3 OEK sing 277 n y 
C4 N OEK sing 278 n n 
N2 C37 OEK sing 279 n n 
C6 N OEK sing 280 n n 
C1 C32 OEK sing 281 n n 
C1 C OEK sing 282 n n 
N C5 OEK sing 283 n n 
N1 H1 OEK sing 284 n n 
C3 H2 OEK sing 285 n n 
C5 H3 OEK sing 286 n n 
C5 H4 OEK sing 287 n n 
C5 H5 OEK sing 288 n n 
C6 H6 OEK sing 289 n n 
C6 H7 OEK sing 290 n n 
C6 H8 OEK sing 291 n n 
C H9 OEK sing 292 n n 
C H10 OEK sing 293 n n 
C H11 OEK sing 294 n n 
C12 H13 OEK sing 295 n n 
C15 H14 OEK sing 296 n n 
C15 H15 OEK sing 297 n n 
C16 H16 OEK sing 298 n n 
C16 H17 OEK sing 299 n n 
C17 H18 OEK sing 300 n n 
C17 H19 OEK sing 301 n n 
C18 H20 OEK sing 302 n n 
C18 H21 OEK sing 303 n n 
C19 H22 OEK sing 304 n n 
C19 H23 OEK sing 305 n n 
C20 H24 OEK sing 306 n n 
C20 H25 OEK sing 307 n n 
C21 H26 OEK sing 308 n n 
C21 H27 OEK sing 309 n n 
C22 H28 OEK sing 310 n n 
C22 H29 OEK sing 311 n n 
C23 H30 OEK sing 312 n n 
C23 H31 OEK sing 313 n n 
C24 H32 OEK sing 314 n n 
C24 H33 OEK sing 315 n n 
C25 H35 OEK sing 316 n n 
C26 H36 OEK sing 317 n n 
C30 H37 OEK sing 318 n n 
C31 H38 OEK sing 319 n n 
C32 H39 OEK sing 320 n n 
C32 H40 OEK sing 321 n n 
C32 H41 OEK sing 322 n n 
C34 H42 OEK sing 323 n n 
C36 H43 OEK sing 324 n n 
C36 H44 OEK sing 325 n n 
C36 H45 OEK sing 326 n n 
C37 H46 OEK sing 327 n n 
C37 H47 OEK sing 328 n n 
C37 H48 OEK sing 329 n n 
C7 H49 OEK sing 330 n n 
C8 H50 OEK sing 331 n n 
O4 H51 OEK sing 332 n n 
C24 CL1 OEK sing 333 n n 
#
_atom_sites.entry_id                     6Y7B 
_atom_sites.fract_transf_matrix[1][1]    0.006201 
_atom_sites.fract_transf_matrix[1][2]    0.00358 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 OEK A 1 301 303 OEK CPY . 
G 3 CL A 1 302 304 CL CL . 
H 2 OEK B 1 301 303 OEK CPY . 
I 3 CL B 1 302 304 CL CL . 
J 2 OEK C 1 301 303 OEK CPY . 
K 3 CL C 1 302 304 CL CL . 
L 2 OEK D 1 301 303 OEK CPY . 
M 3 CL D 1 302 304 CL CL . 
N 2 OEK E 1 301 303 OEK CPY . 
O 3 CL E 1 302 304 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N OEK . . . L 2 -47.273 25.048 6.247 1 40.36 ? N OEK 301 D 1 
HETATM 2 N N1 OEK . . . L 2 -38.298 19.372 5.929 1 40.11 ? N1 OEK 301 D 1 
HETATM 3 C C2 OEK . . . L 2 -46.366 21.503 6.605 1 40.88 ? C2 OEK 301 D 1 
HETATM 4 O O2 OEK . . . L 2 -39.389 20.19 7.715 1 37.58 ? O2 OEK 301 D 1 
HETATM 5 C C3 OEK . . . L 2 -47.085 22.691 6.661 1 37.28 ? C3 OEK 301 D 1 
HETATM 6 C C4 OEK . . . L 2 -46.54 23.9 6.223 1 40.53 ? C4 OEK 301 D 1 
HETATM 7 C C5 OEK . . . L 2 -48.645 25.039 6.727 1 46.27 ? C5 OEK 301 D 1 
HETATM 8 C C6 OEK . . . L 2 -46.816 26.229 5.538 1 42.85 ? C6 OEK 301 D 1 
HETATM 9 C C OEK . . . L 2 -47.352 20.401 8.601 1 41.34 ? C OEK 301 D 1 
HETATM 10 O O OEK . . . L 2 -35.95 17.506 8.026 1 41.55 ? O OEK 301 D 1 
HETATM 11 C C1 OEK . . . L 2 -47.047 20.231 7.104 1 38.45 ? C1 OEK 301 D 1 
HETATM 12 C C10 OEK . . . L 2 -44.339 20.235 5.944 1 40.74 ? C10 OEK 301 D 1 
HETATM 13 C C11 OEK . . . L 2 -42.972 20.299 5.336 1 36.92 ? C11 OEK 301 D 1 
HETATM 14 C C12 OEK . . . L 2 -41.867 20.045 6.158 1 40.13 ? C12 OEK 301 D 1 
HETATM 15 C C13 OEK . . . L 2 -40.57 20.127 5.659 1 39.8 ? C13 OEK 301 D 1 
HETATM 16 C C14 OEK . . . L 2 -39.371 19.901 6.52 1 40.86 ? C14 OEK 301 D 1 
HETATM 17 C C15 OEK . . . L 2 -37.087 19.091 6.682 1 36.07 ? C15 OEK 301 D 1 
HETATM 18 C C16 OEK . . . L 2 -37.141 17.73 7.301 1 36.2 ? C16 OEK 301 D 1 
HETATM 19 C C17 OEK . . . L 2 -35.942 16.233 8.647 1 47.54 ? C17 OEK 301 D 1 
HETATM 20 C C18 OEK . . . L 2 -34.793 16.153 9.588 1 46.79 ? C18 OEK 301 D 1 
HETATM 21 C C19 OEK . . . L 2 -35.467 16.104 11.859 1 39.43 ? C19 OEK 301 D 1 
HETATM 22 C C20 OEK . . . L 2 -35.152 16.865 13.124 1 48.06 ? C20 OEK 301 D 1 
HETATM 23 C C21 OEK . . . L 2 -33.708 17.367 13.178 1 41.84 ? C21 OEK 301 D 1 
HETATM 24 C C22 OEK . . . L 2 -33.3 17.96 14.52 1 27.58 ? C22 OEK 301 D 1 
HETATM 25 C C23 OEK . . . L 2 -31.828 18.305 14.619 1 24 ? C23 OEK 301 D 1 
HETATM 26 C C24 OEK . . . L 2 -31.37 18.551 16.025 1 33.45 ? C24 OEK 301 D 1 
HETATM 27 C C25 OEK . . . L 2 -40.375 20.468 4.329 1 39.46 ? C25 OEK 301 D 1 
HETATM 28 C C26 OEK . . . L 2 -41.453 20.721 3.504 1 40.17 ? C26 OEK 301 D 1 
HETATM 29 C C27 OEK . . . L 2 -42.757 20.636 3.984 1 34.4 ? C27 OEK 301 D 1 
HETATM 30 C C28 OEK . . . L 2 -43.833 20.872 2.952 1 42.48 ? C28 OEK 301 D 1 
HETATM 31 C C29 OEK . . . L 2 -44.898 19.034 6.321 1 42.41 ? C29 OEK 301 D 1 
HETATM 32 C C30 OEK . . . L 2 -44.183 17.825 6.142 1 43.93 ? C30 OEK 301 D 1 
HETATM 33 C C31 OEK . . . L 2 -44.717 16.612 6.534 1 50.36 ? C31 OEK 301 D 1 
HETATM 34 C C32 OEK . . . L 2 -48.375 20.074 6.344 1 38.26 ? C32 OEK 301 D 1 
HETATM 35 C C33 OEK . . . L 2 -46.201 18.972 6.91 1 40.57 ? C33 OEK 301 D 1 
HETATM 36 C C34 OEK . . . L 2 -46.708 17.734 7.297 1 37.93 ? C34 OEK 301 D 1 
HETATM 37 C C35 OEK . . . L 2 -45.983 16.543 7.122 1 46.48 ? C35 OEK 301 D 1 
HETATM 38 C C36 OEK . . . L 2 -45.756 14.111 7.31 1 39.29 ? C36 OEK 301 D 1 
HETATM 39 C C37 OEK . . . L 2 -47.472 15.272 8.599 1 41.92 ? C37 OEK 301 D 1 
HETATM 40 C C7 OEK . . . L 2 -45.237 23.896 5.735 1 42.55 ? C7 OEK 301 D 1 
HETATM 41 C C8 OEK . . . L 2 -44.509 22.723 5.674 1 42.86 ? C8 OEK 301 D 1 
HETATM 42 C C9 OEK . . . L 2 -45.061 21.516 6.092 1 45.9 ? C9 OEK 301 D 1 
HETATM 43 N N2 OEK . . . L 2 -46.51 15.337 7.512 1 43.35 ? N2 OEK 301 D 1 
HETATM 44 O O1 OEK . . . L 2 -35.11 16.91 10.746 1 44.2 ? O1 OEK 301 D 1 
HETATM 45 O O3 OEK . . . L 2 -43.474 21.255 1.815 1 40.47 ? O3 OEK 301 D 1 
HETATM 46 O O4 OEK . . . L 2 -45.033 20.71 3.288 1 48.65 ? O4 OEK 301 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           46 
#