data_6Y7F # _model_server_result.job_id NUJDgilTO6VBuDCCqc6wGw _model_server_result.datetime_utc '2024-11-27 19:03:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6Y7F # _exptl.entry_id 6Y7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.695 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Octyl Glucose Neopentyl Glycol' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.03 _cell.angle_gamma 90 _cell.entry_id 6Y7F _cell.length_a 63.229 _cell.length_b 72.459 _cell.length_c 112.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 99 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 99 B CYS 99 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A NE2 HIS 150 A HIS 150 1_555 C C25 OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale2 A NE2 HIS 181 A HIS 181 1_555 C C OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale3 B NE2 HIS 150 B HIS 150 1_555 H C25 OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale4 B NE2 HIS 181 B HIS 181 1_555 H C OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? # _chem_comp.formula 'C27 H52 O12' _chem_comp.formula_weight 568.695 _chem_comp.id 37X _chem_comp.mon_nstd_flag . _chem_comp.name 'Octyl Glucose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 37X sing 1 n n O3 C3 37X sing 2 n n C3 C4 37X sing 3 n n C3 C2 37X sing 4 n n C4 C5 37X sing 5 n n O6 C6 37X sing 6 n n O2 C2 37X sing 7 n n C5 C6 37X sing 8 n n C5 O5 37X sing 9 n n C2 C1 37X sing 10 n n CBC CBE 37X sing 11 n n CBE CBG 37X sing 12 n n C1 O5 37X sing 13 n n C1 O1 37X sing 14 n n CBG CBI 37X sing 15 n n O1 CBS 37X sing 16 n n CBI CBK 37X sing 17 n n CBS CCM 37X sing 18 n n CBK CBQ 37X sing 19 n n CBQ CCM 37X sing 20 n n CCM CBT 37X sing 21 n n CCM CBR 37X sing 22 n n CBT OBV 37X sing 23 n n CBR CBL 37X sing 24 n n OBV CCJ 37X sing 25 n n OAP CCL 37X sing 26 n n CCL CCJ 37X sing 27 n n CCL CCH 37X sing 28 n n OAN CCH 37X sing 29 n n CCJ OBX 37X sing 30 n n CBL CBJ 37X sing 31 n n OBX CCF 37X sing 32 n n CCH CCQ 37X sing 33 n n CCQ CCF 37X sing 34 n n CCQ OCB 37X sing 35 n n CBJ CBH 37X sing 36 n n CCF CBP 37X sing 37 n n CBP OAL 37X sing 38 n n CBH CBF 37X sing 39 n n CBF CBD 37X sing 40 n n OAL H1 37X sing 41 n n OAN H2 37X sing 42 n n C1 H3 37X sing 43 n n C2 H4 37X sing 44 n n O2 H5 37X sing 45 n n C3 H6 37X sing 46 n n O3 H7 37X sing 47 n n C4 H8 37X sing 48 n n O4 H9 37X sing 49 n n C5 H10 37X sing 50 n n C6 H11 37X sing 51 n n C6 H12 37X sing 52 n n O6 H13 37X sing 53 n n OAP H14 37X sing 54 n n CBC H15 37X sing 55 n n CBC H16 37X sing 56 n n CBC H17 37X sing 57 n n CBD H18 37X sing 58 n n CBD H19 37X sing 59 n n CBD H20 37X sing 60 n n CBE H21 37X sing 61 n n CBE H22 37X sing 62 n n CBF H23 37X sing 63 n n CBF H24 37X sing 64 n n CBG H25 37X sing 65 n n CBG H26 37X sing 66 n n CBH H27 37X sing 67 n n CBH H28 37X sing 68 n n CBI H29 37X sing 69 n n CBI H30 37X sing 70 n n CBJ H31 37X sing 71 n n CBJ H32 37X sing 72 n n CBK H33 37X sing 73 n n CBK H34 37X sing 74 n n CBL H35 37X sing 75 n n CBL H36 37X sing 76 n n CBP H37 37X sing 77 n n CBP H38 37X sing 78 n n CBQ H39 37X sing 79 n n CBQ H40 37X sing 80 n n CBR H41 37X sing 81 n n CBR H42 37X sing 82 n n CBS H43 37X sing 83 n n CBS H44 37X sing 84 n n CBT H45 37X sing 85 n n CBT H46 37X sing 86 n n OCB H47 37X sing 87 n n CCF H48 37X sing 88 n n CCH H49 37X sing 89 n n CCJ H50 37X sing 90 n n CCL H51 37X sing 91 n n CCQ H52 37X sing 92 n n # _atom_sites.entry_id 6Y7F _atom_sites.fract_transf_matrix[1][1] 0.015816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OFN A 1 301 301 OFN MLS . D 3 37X A 1 302 501 37X 37X . E 3 37X A 1 303 601 37X 37X . F 3 37X A 1 304 701 37X 37X . G 4 CL A 1 305 1 CL CL . H 2 OFN B 1 301 301 OFN MLS . I 3 37X B 1 302 401 37X 37X . J 4 CL B 1 303 2 CL CL . K 5 HOH A 1 401 114 HOH HOH . K 5 HOH A 2 402 27 HOH HOH . K 5 HOH A 3 403 40 HOH HOH . K 5 HOH A 4 404 57 HOH HOH . K 5 HOH A 5 405 76 HOH HOH . K 5 HOH A 6 406 87 HOH HOH . K 5 HOH A 7 407 4 HOH HOH . K 5 HOH A 8 408 5 HOH HOH . K 5 HOH A 9 409 72 HOH HOH . K 5 HOH A 10 410 36 HOH HOH . K 5 HOH A 11 411 74 HOH HOH . K 5 HOH A 12 412 39 HOH HOH . K 5 HOH A 13 413 35 HOH HOH . K 5 HOH A 14 414 1 HOH HOH . K 5 HOH A 15 415 100 HOH HOH . K 5 HOH A 16 416 66 HOH HOH . K 5 HOH A 17 417 49 HOH HOH . K 5 HOH A 18 418 41 HOH HOH . K 5 HOH A 19 419 30 HOH HOH . K 5 HOH A 20 420 37 HOH HOH . K 5 HOH A 21 421 79 HOH HOH . K 5 HOH A 22 422 62 HOH HOH . K 5 HOH A 23 423 15 HOH HOH . K 5 HOH A 24 424 60 HOH HOH . K 5 HOH A 25 425 21 HOH HOH . K 5 HOH A 26 426 102 HOH HOH . K 5 HOH A 27 427 14 HOH HOH . K 5 HOH A 28 428 34 HOH HOH . K 5 HOH A 29 429 3 HOH HOH . K 5 HOH A 30 430 16 HOH HOH . K 5 HOH A 31 431 101 HOH HOH . K 5 HOH A 32 432 69 HOH HOH . K 5 HOH A 33 433 71 HOH HOH . K 5 HOH A 34 434 97 HOH HOH . K 5 HOH A 35 435 17 HOH HOH . K 5 HOH A 36 436 95 HOH HOH . K 5 HOH A 37 437 13 HOH HOH . K 5 HOH A 38 438 70 HOH HOH . K 5 HOH A 39 439 65 HOH HOH . K 5 HOH A 40 440 67 HOH HOH . K 5 HOH A 41 441 106 HOH HOH . K 5 HOH A 42 442 64 HOH HOH . K 5 HOH A 43 443 111 HOH HOH . K 5 HOH A 44 444 38 HOH HOH . K 5 HOH A 45 445 8 HOH HOH . K 5 HOH A 46 446 42 HOH HOH . K 5 HOH A 47 447 9 HOH HOH . K 5 HOH A 48 448 59 HOH HOH . K 5 HOH A 49 449 98 HOH HOH . K 5 HOH A 50 450 115 HOH HOH . K 5 HOH A 51 451 89 HOH HOH . K 5 HOH A 52 452 78 HOH HOH . K 5 HOH A 53 453 85 HOH HOH . K 5 HOH A 54 454 22 HOH HOH . K 5 HOH A 55 455 103 HOH HOH . K 5 HOH A 56 456 94 HOH HOH . K 5 HOH A 57 457 88 HOH HOH . K 5 HOH A 58 458 112 HOH HOH . K 5 HOH A 59 459 80 HOH HOH . K 5 HOH A 60 460 75 HOH HOH . K 5 HOH A 61 461 96 HOH HOH . L 5 HOH B 1 401 48 HOH HOH . L 5 HOH B 2 402 104 HOH HOH . L 5 HOH B 3 403 68 HOH HOH . L 5 HOH B 4 404 53 HOH HOH . L 5 HOH B 5 405 45 HOH HOH . L 5 HOH B 6 406 50 HOH HOH . L 5 HOH B 7 407 28 HOH HOH . L 5 HOH B 8 408 43 HOH HOH . L 5 HOH B 9 409 19 HOH HOH . L 5 HOH B 10 410 51 HOH HOH . L 5 HOH B 11 411 6 HOH HOH . L 5 HOH B 12 412 47 HOH HOH . L 5 HOH B 13 413 44 HOH HOH . L 5 HOH B 14 414 24 HOH HOH . L 5 HOH B 15 415 55 HOH HOH . L 5 HOH B 16 416 23 HOH HOH . L 5 HOH B 17 417 2 HOH HOH . L 5 HOH B 18 418 32 HOH HOH . L 5 HOH B 19 419 90 HOH HOH . L 5 HOH B 20 420 12 HOH HOH . L 5 HOH B 21 421 54 HOH HOH . L 5 HOH B 22 422 84 HOH HOH . L 5 HOH B 23 423 52 HOH HOH . L 5 HOH B 24 424 82 HOH HOH . L 5 HOH B 25 425 91 HOH HOH . L 5 HOH B 26 426 33 HOH HOH . L 5 HOH B 27 427 18 HOH HOH . L 5 HOH B 28 428 25 HOH HOH . L 5 HOH B 29 429 108 HOH HOH . L 5 HOH B 30 430 83 HOH HOH . L 5 HOH B 31 431 31 HOH HOH . L 5 HOH B 32 432 20 HOH HOH . L 5 HOH B 33 433 61 HOH HOH . L 5 HOH B 34 434 7 HOH HOH . L 5 HOH B 35 435 63 HOH HOH . L 5 HOH B 36 436 99 HOH HOH . L 5 HOH B 37 437 113 HOH HOH . L 5 HOH B 38 438 10 HOH HOH . L 5 HOH B 39 439 46 HOH HOH . L 5 HOH B 40 440 109 HOH HOH . L 5 HOH B 41 441 73 HOH HOH . L 5 HOH B 42 442 105 HOH HOH . L 5 HOH B 43 443 58 HOH HOH . L 5 HOH B 44 444 86 HOH HOH . L 5 HOH B 45 445 11 HOH HOH . L 5 HOH B 46 446 93 HOH HOH . L 5 HOH B 47 447 107 HOH HOH . L 5 HOH B 48 448 26 HOH HOH . L 5 HOH B 49 449 110 HOH HOH . L 5 HOH B 50 450 92 HOH HOH . L 5 HOH B 51 451 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAL 37X . . . D 3 5.98 40.873 -14.366 1 45.8 ? OAL 37X 302 A 1 HETATM 2 O OAN 37X . . . D 3 0.981 42.457 -11.317 1 44.77 ? OAN 37X 302 A 1 HETATM 3 C C1 37X . . . D 3 0.081 35.593 -11.764 1 35.12 ? C1 37X 302 A 1 HETATM 4 O O1 37X . . . D 3 1.468 35.755 -11.646 1 36.54 ? O1 37X 302 A 1 HETATM 5 C C2 37X . . . D 3 -0.479 36.712 -12.639 1 33.86 ? C2 37X 302 A 1 HETATM 6 O O2 37X . . . D 3 0.323 36.971 -13.779 1 33.35 ? O2 37X 302 A 1 HETATM 7 C C3 37X . . . D 3 -1.906 36.296 -12.972 1 33.17 ? C3 37X 302 A 1 HETATM 8 O O3 37X . . . D 3 -2.503 37.006 -14.047 1 32.4 ? O3 37X 302 A 1 HETATM 9 C C4 37X . . . D 3 -2.712 36.248 -11.677 1 33.93 ? C4 37X 302 A 1 HETATM 10 O O4 37X . . . D 3 -4.093 35.963 -11.89 1 33.5 ? O4 37X 302 A 1 HETATM 11 C C5 37X . . . D 3 -2.046 35.22 -10.76 1 34.99 ? C5 37X 302 A 1 HETATM 12 O O5 37X . . . D 3 -0.653 35.546 -10.546 1 34.84 ? O5 37X 302 A 1 HETATM 13 C C6 37X . . . D 3 -2.704 35.042 -9.423 1 36.17 ? C6 37X 302 A 1 HETATM 14 O O6 37X . . . D 3 -3.205 33.709 -9.344 1 37.29 ? O6 37X 302 A 1 HETATM 15 O OAP 37X . . . D 3 1.34 39.988 -9.998 1 42.37 ? OAP 37X 302 A 1 HETATM 16 C CBC 37X . . . D 3 9.629 36.72 -6.196 1 41.29 ? CBC 37X 302 A 1 HETATM 17 C CBD 37X . . . D 3 4.571 28.347 -10.827 1 40.37 ? CBD 37X 302 A 1 HETATM 18 C CBE 37X . . . D 3 8.863 35.588 -6.87 1 41.24 ? CBE 37X 302 A 1 HETATM 19 C CBF 37X . . . D 3 4.552 29.571 -11.69 1 40.1 ? CBF 37X 302 A 1 HETATM 20 C CBG 37X . . . D 3 8.138 36.009 -8.161 1 40.72 ? CBG 37X 302 A 1 HETATM 21 C CBH 37X . . . D 3 4.521 30.825 -10.879 1 39.7 ? CBH 37X 302 A 1 HETATM 22 C CBI 37X . . . D 3 6.62 35.929 -8.087 1 39.88 ? CBI 37X 302 A 1 HETATM 23 C CBJ 37X . . . D 3 4.449 32.106 -11.69 1 39.52 ? CBJ 37X 302 A 1 HETATM 24 C CBK 37X . . . D 3 5.947 35.952 -9.447 1 39.49 ? CBK 37X 302 A 1 HETATM 25 C CBL 37X . . . D 3 3.823 33.248 -10.909 1 39.34 ? CBL 37X 302 A 1 HETATM 26 C CBP 37X . . . D 3 4.578 41.064 -14.471 1 44.97 ? CBP 37X 302 A 1 HETATM 27 C CBQ 37X . . . D 3 4.428 35.826 -9.357 1 39.59 ? CBQ 37X 302 A 1 HETATM 28 C CBR 37X . . . D 3 4.087 34.616 -11.532 1 39.36 ? CBR 37X 302 A 1 HETATM 29 C CBS 37X . . . D 3 2.161 35.711 -10.415 1 37.95 ? CBS 37X 302 A 1 HETATM 30 C CBT 37X . . . D 3 3.958 37.115 -11.481 1 40.4 ? CBT 37X 302 A 1 HETATM 31 O OBV 37X . . . D 3 3.095 38.143 -11.028 1 41.73 ? OBV 37X 302 A 1 HETATM 32 O OBX 37X . . . D 3 3.751 39.648 -12.746 1 43.25 ? OBX 37X 302 A 1 HETATM 33 O OCB 37X . . . D 3 2.84 43.164 -13.33 1 45.14 ? OCB 37X 302 A 1 HETATM 34 C CCF 37X . . . D 3 3.953 41.035 -13.109 1 44.1 ? CCF 37X 302 A 1 HETATM 35 C CCH 37X . . . D 3 2.127 41.654 -11.581 1 44.1 ? CCH 37X 302 A 1 HETATM 36 C CCJ 37X . . . D 3 3.247 39.472 -11.423 1 42.59 ? CCJ 37X 302 A 1 HETATM 37 C CCL 37X . . . D 3 1.901 40.177 -11.283 1 42.96 ? CCL 37X 302 A 1 HETATM 38 C CCM 37X . . . D 3 3.659 35.835 -10.694 1 39.5 ? CCM 37X 302 A 1 HETATM 39 C CCQ 37X . . . D 3 2.636 41.8 -13.009 1 44.44 ? CCQ 37X 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #