data_6Y7F # _model_server_result.job_id pX3n8FuZuNhCfUCnMCsDnA _model_server_result.datetime_utc '2024-10-19 00:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 6Y7F # _exptl.entry_id 6Y7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.695 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Octyl Glucose Neopentyl Glycol' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.03 _cell.angle_gamma 90 _cell.entry_id 6Y7F _cell.length_a 63.229 _cell.length_b 72.459 _cell.length_c 112.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 99 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 99 B CYS 99 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A NE2 HIS 150 A HIS 150 1_555 C C25 OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale2 A NE2 HIS 181 A HIS 181 1_555 C C OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale3 B NE2 HIS 150 B HIS 150 1_555 H C25 OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale4 B NE2 HIS 181 B HIS 181 1_555 H C OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? # _chem_comp.formula 'C27 H52 O12' _chem_comp.formula_weight 568.695 _chem_comp.id 37X _chem_comp.mon_nstd_flag . _chem_comp.name 'Octyl Glucose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y7F _atom_sites.fract_transf_matrix[1][1] 0.015816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OFN A 1 301 301 OFN MLS . D 3 37X A 1 302 501 37X 37X . E 3 37X A 1 303 601 37X 37X . F 3 37X A 1 304 701 37X 37X . G 4 CL A 1 305 1 CL CL . H 2 OFN B 1 301 301 OFN MLS . I 3 37X B 1 302 401 37X 37X . J 4 CL B 1 303 2 CL CL . K 5 HOH A 1 401 114 HOH HOH . K 5 HOH A 2 402 27 HOH HOH . K 5 HOH A 3 403 40 HOH HOH . K 5 HOH A 4 404 57 HOH HOH . K 5 HOH A 5 405 76 HOH HOH . K 5 HOH A 6 406 87 HOH HOH . K 5 HOH A 7 407 4 HOH HOH . K 5 HOH A 8 408 5 HOH HOH . K 5 HOH A 9 409 72 HOH HOH . K 5 HOH A 10 410 36 HOH HOH . K 5 HOH A 11 411 74 HOH HOH . K 5 HOH A 12 412 39 HOH HOH . K 5 HOH A 13 413 35 HOH HOH . K 5 HOH A 14 414 1 HOH HOH . K 5 HOH A 15 415 100 HOH HOH . K 5 HOH A 16 416 66 HOH HOH . K 5 HOH A 17 417 49 HOH HOH . K 5 HOH A 18 418 41 HOH HOH . K 5 HOH A 19 419 30 HOH HOH . K 5 HOH A 20 420 37 HOH HOH . K 5 HOH A 21 421 79 HOH HOH . K 5 HOH A 22 422 62 HOH HOH . K 5 HOH A 23 423 15 HOH HOH . K 5 HOH A 24 424 60 HOH HOH . K 5 HOH A 25 425 21 HOH HOH . K 5 HOH A 26 426 102 HOH HOH . K 5 HOH A 27 427 14 HOH HOH . K 5 HOH A 28 428 34 HOH HOH . K 5 HOH A 29 429 3 HOH HOH . K 5 HOH A 30 430 16 HOH HOH . K 5 HOH A 31 431 101 HOH HOH . K 5 HOH A 32 432 69 HOH HOH . K 5 HOH A 33 433 71 HOH HOH . K 5 HOH A 34 434 97 HOH HOH . K 5 HOH A 35 435 17 HOH HOH . K 5 HOH A 36 436 95 HOH HOH . K 5 HOH A 37 437 13 HOH HOH . K 5 HOH A 38 438 70 HOH HOH . K 5 HOH A 39 439 65 HOH HOH . K 5 HOH A 40 440 67 HOH HOH . K 5 HOH A 41 441 106 HOH HOH . K 5 HOH A 42 442 64 HOH HOH . K 5 HOH A 43 443 111 HOH HOH . K 5 HOH A 44 444 38 HOH HOH . K 5 HOH A 45 445 8 HOH HOH . K 5 HOH A 46 446 42 HOH HOH . K 5 HOH A 47 447 9 HOH HOH . K 5 HOH A 48 448 59 HOH HOH . K 5 HOH A 49 449 98 HOH HOH . K 5 HOH A 50 450 115 HOH HOH . K 5 HOH A 51 451 89 HOH HOH . K 5 HOH A 52 452 78 HOH HOH . K 5 HOH A 53 453 85 HOH HOH . K 5 HOH A 54 454 22 HOH HOH . K 5 HOH A 55 455 103 HOH HOH . K 5 HOH A 56 456 94 HOH HOH . K 5 HOH A 57 457 88 HOH HOH . K 5 HOH A 58 458 112 HOH HOH . K 5 HOH A 59 459 80 HOH HOH . K 5 HOH A 60 460 75 HOH HOH . K 5 HOH A 61 461 96 HOH HOH . L 5 HOH B 1 401 48 HOH HOH . L 5 HOH B 2 402 104 HOH HOH . L 5 HOH B 3 403 68 HOH HOH . L 5 HOH B 4 404 53 HOH HOH . L 5 HOH B 5 405 45 HOH HOH . L 5 HOH B 6 406 50 HOH HOH . L 5 HOH B 7 407 28 HOH HOH . L 5 HOH B 8 408 43 HOH HOH . L 5 HOH B 9 409 19 HOH HOH . L 5 HOH B 10 410 51 HOH HOH . L 5 HOH B 11 411 6 HOH HOH . L 5 HOH B 12 412 47 HOH HOH . L 5 HOH B 13 413 44 HOH HOH . L 5 HOH B 14 414 24 HOH HOH . L 5 HOH B 15 415 55 HOH HOH . L 5 HOH B 16 416 23 HOH HOH . L 5 HOH B 17 417 2 HOH HOH . L 5 HOH B 18 418 32 HOH HOH . L 5 HOH B 19 419 90 HOH HOH . L 5 HOH B 20 420 12 HOH HOH . L 5 HOH B 21 421 54 HOH HOH . L 5 HOH B 22 422 84 HOH HOH . L 5 HOH B 23 423 52 HOH HOH . L 5 HOH B 24 424 82 HOH HOH . L 5 HOH B 25 425 91 HOH HOH . L 5 HOH B 26 426 33 HOH HOH . L 5 HOH B 27 427 18 HOH HOH . L 5 HOH B 28 428 25 HOH HOH . L 5 HOH B 29 429 108 HOH HOH . L 5 HOH B 30 430 83 HOH HOH . L 5 HOH B 31 431 31 HOH HOH . L 5 HOH B 32 432 20 HOH HOH . L 5 HOH B 33 433 61 HOH HOH . L 5 HOH B 34 434 7 HOH HOH . L 5 HOH B 35 435 63 HOH HOH . L 5 HOH B 36 436 99 HOH HOH . L 5 HOH B 37 437 113 HOH HOH . L 5 HOH B 38 438 10 HOH HOH . L 5 HOH B 39 439 46 HOH HOH . L 5 HOH B 40 440 109 HOH HOH . L 5 HOH B 41 441 73 HOH HOH . L 5 HOH B 42 442 105 HOH HOH . L 5 HOH B 43 443 58 HOH HOH . L 5 HOH B 44 444 86 HOH HOH . L 5 HOH B 45 445 11 HOH HOH . L 5 HOH B 46 446 93 HOH HOH . L 5 HOH B 47 447 107 HOH HOH . L 5 HOH B 48 448 26 HOH HOH . L 5 HOH B 49 449 110 HOH HOH . L 5 HOH B 50 450 92 HOH HOH . L 5 HOH B 51 451 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAL 37X . . . I 3 16.654 91.675 18.801 1 67.01 ? OAL 37X 302 B 1 HETATM 2 O OAN 37X . . . I 3 21.145 87.67 17.491 1 69.04 ? OAN 37X 302 B 1 HETATM 3 C C1 37X . . . I 3 16.77 88.866 13.403 1 65.6 ? C1 37X 302 B 1 HETATM 4 O O1 37X . . . I 3 17.407 90.104 13.528 1 65.08 ? O1 37X 302 B 1 HETATM 5 C C2 37X . . . I 3 16.802 88.179 14.767 1 65.6 ? C2 37X 302 B 1 HETATM 6 O O2 37X . . . I 3 16.203 88.998 15.764 1 65.36 ? O2 37X 302 B 1 HETATM 7 C C3 37X . . . I 3 16.082 86.837 14.658 1 65.73 ? C3 37X 302 B 1 HETATM 8 O O3 37X . . . I 3 16.041 86.155 15.91 1 65.14 ? O3 37X 302 B 1 HETATM 9 C C4 37X . . . I 3 16.72 85.99 13.56 1 66.27 ? C4 37X 302 B 1 HETATM 10 O O4 37X . . . I 3 16.048 84.741 13.426 1 66.53 ? O4 37X 302 B 1 HETATM 11 C C5 37X . . . I 3 16.679 86.761 12.24 1 66.45 ? C5 37X 302 B 1 HETATM 12 O O5 37X . . . I 3 17.342 88.035 12.4 1 66.09 ? O5 37X 302 B 1 HETATM 13 C C6 37X . . . I 3 17.357 86.039 11.095 1 66.79 ? C6 37X 302 B 1 HETATM 14 O O6 37X . . . I 3 18.689 85.662 11.417 1 67.02 ? O6 37X 302 B 1 HETATM 15 O OAP 37X . . . I 3 21.969 89.921 15.832 1 68.48 ? OAP 37X 302 B 1 HETATM 16 C CBC 37X . . . I 3 23.855 92.966 14.776 1 63.39 ? CBC 37X 302 B 1 HETATM 17 C CBD 37X . . . I 3 16.927 94.006 6.578 1 62.38 ? CBD 37X 302 B 1 HETATM 18 C CBE 37X . . . I 3 23.048 94.256 14.847 1 63.44 ? CBE 37X 302 B 1 HETATM 19 C CBF 37X . . . I 3 17.166 94.173 8.068 1 62.56 ? CBF 37X 302 B 1 HETATM 20 C CBG 37X . . . I 3 22.823 94.926 13.493 1 63.41 ? CBG 37X 302 B 1 HETATM 21 C CBH 37X . . . I 3 16.077 93.547 8.916 1 62.63 ? CBH 37X 302 B 1 HETATM 22 C CBI 37X . . . I 3 22.042 94.098 12.485 1 63.36 ? CBI 37X 302 B 1 HETATM 23 C CBJ 37X . . . I 3 16.292 93.683 10.41 1 62.85 ? CBJ 37X 302 B 1 HETATM 24 C CBK 37X . . . I 3 20.576 93.888 12.833 1 63.57 ? CBK 37X 302 B 1 HETATM 25 C CBL 37X . . . I 3 17.446 92.845 10.925 1 63.46 ? CBL 37X 302 B 1 HETATM 26 C CBP 37X . . . I 3 17.127 90.334 18.699 1 67.62 ? CBP 37X 302 B 1 HETATM 27 C CBQ 37X . . . I 3 20.071 92.498 12.447 1 63.96 ? CBQ 37X 302 B 1 HETATM 28 C CBR 37X . . . I 3 17.61 92.908 12.441 1 63.96 ? CBR 37X 302 B 1 HETATM 29 C CBS 37X . . . I 3 18.462 90.572 12.709 1 64.58 ? CBS 37X 302 B 1 HETATM 30 C CBT 37X . . . I 3 18.716 92.231 14.562 1 65.39 ? CBT 37X 302 B 1 HETATM 31 O OBV 37X . . . I 3 19.906 91.684 15.112 1 66.63 ? OBV 37X 302 B 1 HETATM 32 O OBX 37X . . . I 3 18.598 90.914 16.915 1 68.01 ? OBX 37X 302 B 1 HETATM 33 O OCB 37X . . . I 3 19.054 88.169 19.322 1 69.03 ? OCB 37X 302 B 1 HETATM 34 C CCF 37X . . . I 3 18.557 90.281 18.212 1 68.14 ? CCF 37X 302 B 1 HETATM 35 C CCH 37X . . . I 3 20.558 88.966 17.586 1 68.89 ? CCH 37X 302 B 1 HETATM 36 C CCJ 37X . . . I 3 19.91 91.075 16.38 1 67.73 ? CCJ 37X 302 B 1 HETATM 37 C CCL 37X . . . I 3 20.621 89.726 16.255 1 68.47 ? CCL 37X 302 B 1 HETATM 38 C CCM 37X . . . I 3 18.725 92.041 13.045 1 64.41 ? CCM 37X 302 B 1 HETATM 39 C CCQ 37X . . . I 3 19.118 88.866 18.085 1 68.73 ? CCQ 37X 302 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 39 #