data_6Y7F # _model_server_result.job_id BsnjPZscZ5ypxCIhA258Kg _model_server_result.datetime_utc '2024-10-19 00:53:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 6Y7F # _exptl.entry_id 6Y7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.695 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Octyl Glucose Neopentyl Glycol' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.03 _cell.angle_gamma 90 _cell.entry_id 6Y7F _cell.length_a 63.229 _cell.length_b 72.459 _cell.length_c 112.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 99 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 99 B CYS 99 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A NE2 HIS 150 A HIS 150 1_555 C C25 OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale2 A NE2 HIS 181 A HIS 181 1_555 C C OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale3 B NE2 HIS 150 B HIS 150 1_555 H C25 OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale4 B NE2 HIS 181 B HIS 181 1_555 H C OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? # _chem_comp.formula 'C27 H52 O12' _chem_comp.formula_weight 568.695 _chem_comp.id 37X _chem_comp.mon_nstd_flag . _chem_comp.name 'Octyl Glucose Neopentyl Glycol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Y7F _atom_sites.fract_transf_matrix[1][1] 0.015816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OFN A 1 301 301 OFN MLS . D 3 37X A 1 302 501 37X 37X . E 3 37X A 1 303 601 37X 37X . F 3 37X A 1 304 701 37X 37X . G 4 CL A 1 305 1 CL CL . H 2 OFN B 1 301 301 OFN MLS . I 3 37X B 1 302 401 37X 37X . J 4 CL B 1 303 2 CL CL . K 5 HOH A 1 401 114 HOH HOH . K 5 HOH A 2 402 27 HOH HOH . K 5 HOH A 3 403 40 HOH HOH . K 5 HOH A 4 404 57 HOH HOH . K 5 HOH A 5 405 76 HOH HOH . K 5 HOH A 6 406 87 HOH HOH . K 5 HOH A 7 407 4 HOH HOH . K 5 HOH A 8 408 5 HOH HOH . K 5 HOH A 9 409 72 HOH HOH . K 5 HOH A 10 410 36 HOH HOH . K 5 HOH A 11 411 74 HOH HOH . K 5 HOH A 12 412 39 HOH HOH . K 5 HOH A 13 413 35 HOH HOH . K 5 HOH A 14 414 1 HOH HOH . K 5 HOH A 15 415 100 HOH HOH . K 5 HOH A 16 416 66 HOH HOH . K 5 HOH A 17 417 49 HOH HOH . K 5 HOH A 18 418 41 HOH HOH . K 5 HOH A 19 419 30 HOH HOH . K 5 HOH A 20 420 37 HOH HOH . K 5 HOH A 21 421 79 HOH HOH . K 5 HOH A 22 422 62 HOH HOH . K 5 HOH A 23 423 15 HOH HOH . K 5 HOH A 24 424 60 HOH HOH . K 5 HOH A 25 425 21 HOH HOH . K 5 HOH A 26 426 102 HOH HOH . K 5 HOH A 27 427 14 HOH HOH . K 5 HOH A 28 428 34 HOH HOH . K 5 HOH A 29 429 3 HOH HOH . K 5 HOH A 30 430 16 HOH HOH . K 5 HOH A 31 431 101 HOH HOH . K 5 HOH A 32 432 69 HOH HOH . K 5 HOH A 33 433 71 HOH HOH . K 5 HOH A 34 434 97 HOH HOH . K 5 HOH A 35 435 17 HOH HOH . K 5 HOH A 36 436 95 HOH HOH . K 5 HOH A 37 437 13 HOH HOH . K 5 HOH A 38 438 70 HOH HOH . K 5 HOH A 39 439 65 HOH HOH . K 5 HOH A 40 440 67 HOH HOH . K 5 HOH A 41 441 106 HOH HOH . K 5 HOH A 42 442 64 HOH HOH . K 5 HOH A 43 443 111 HOH HOH . K 5 HOH A 44 444 38 HOH HOH . K 5 HOH A 45 445 8 HOH HOH . K 5 HOH A 46 446 42 HOH HOH . K 5 HOH A 47 447 9 HOH HOH . K 5 HOH A 48 448 59 HOH HOH . K 5 HOH A 49 449 98 HOH HOH . K 5 HOH A 50 450 115 HOH HOH . K 5 HOH A 51 451 89 HOH HOH . K 5 HOH A 52 452 78 HOH HOH . K 5 HOH A 53 453 85 HOH HOH . K 5 HOH A 54 454 22 HOH HOH . K 5 HOH A 55 455 103 HOH HOH . K 5 HOH A 56 456 94 HOH HOH . K 5 HOH A 57 457 88 HOH HOH . K 5 HOH A 58 458 112 HOH HOH . K 5 HOH A 59 459 80 HOH HOH . K 5 HOH A 60 460 75 HOH HOH . K 5 HOH A 61 461 96 HOH HOH . L 5 HOH B 1 401 48 HOH HOH . L 5 HOH B 2 402 104 HOH HOH . L 5 HOH B 3 403 68 HOH HOH . L 5 HOH B 4 404 53 HOH HOH . L 5 HOH B 5 405 45 HOH HOH . L 5 HOH B 6 406 50 HOH HOH . L 5 HOH B 7 407 28 HOH HOH . L 5 HOH B 8 408 43 HOH HOH . L 5 HOH B 9 409 19 HOH HOH . L 5 HOH B 10 410 51 HOH HOH . L 5 HOH B 11 411 6 HOH HOH . L 5 HOH B 12 412 47 HOH HOH . L 5 HOH B 13 413 44 HOH HOH . L 5 HOH B 14 414 24 HOH HOH . L 5 HOH B 15 415 55 HOH HOH . L 5 HOH B 16 416 23 HOH HOH . L 5 HOH B 17 417 2 HOH HOH . L 5 HOH B 18 418 32 HOH HOH . L 5 HOH B 19 419 90 HOH HOH . L 5 HOH B 20 420 12 HOH HOH . L 5 HOH B 21 421 54 HOH HOH . L 5 HOH B 22 422 84 HOH HOH . L 5 HOH B 23 423 52 HOH HOH . L 5 HOH B 24 424 82 HOH HOH . L 5 HOH B 25 425 91 HOH HOH . L 5 HOH B 26 426 33 HOH HOH . L 5 HOH B 27 427 18 HOH HOH . L 5 HOH B 28 428 25 HOH HOH . L 5 HOH B 29 429 108 HOH HOH . L 5 HOH B 30 430 83 HOH HOH . L 5 HOH B 31 431 31 HOH HOH . L 5 HOH B 32 432 20 HOH HOH . L 5 HOH B 33 433 61 HOH HOH . L 5 HOH B 34 434 7 HOH HOH . L 5 HOH B 35 435 63 HOH HOH . L 5 HOH B 36 436 99 HOH HOH . L 5 HOH B 37 437 113 HOH HOH . L 5 HOH B 38 438 10 HOH HOH . L 5 HOH B 39 439 46 HOH HOH . L 5 HOH B 40 440 109 HOH HOH . L 5 HOH B 41 441 73 HOH HOH . L 5 HOH B 42 442 105 HOH HOH . L 5 HOH B 43 443 58 HOH HOH . L 5 HOH B 44 444 86 HOH HOH . L 5 HOH B 45 445 11 HOH HOH . L 5 HOH B 46 446 93 HOH HOH . L 5 HOH B 47 447 107 HOH HOH . L 5 HOH B 48 448 26 HOH HOH . L 5 HOH B 49 449 110 HOH HOH . L 5 HOH B 50 450 92 HOH HOH . L 5 HOH B 51 451 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAL 37X . . . F 3 6.696 37.326 -3.973 1 82.99 ? OAL 37X 304 A 1 HETATM 2 O OAN 37X . . . F 3 0.99 39.559 -4.498 1 83.34 ? OAN 37X 304 A 1 HETATM 3 C C1 37X . . . F 3 0.813 33.551 0.03 1 92.22 ? C1 37X 304 A 1 HETATM 4 O O1 37X . . . F 3 1.988 34.292 0.178 1 90.67 ? O1 37X 304 A 1 HETATM 5 C C2 37X . . . F 3 1.086 32.444 -0.985 1 92.96 ? C2 37X 304 A 1 HETATM 6 O O2 37X . . . F 3 2.132 31.596 -0.517 1 93.2 ? O2 37X 304 A 1 HETATM 7 C C3 37X . . . F 3 -0.184 31.628 -1.202 1 93.32 ? C3 37X 304 A 1 HETATM 8 O O3 37X . . . F 3 0.033 30.678 -2.242 1 93.39 ? O3 37X 304 A 1 HETATM 9 C C4 37X . . . F 3 -1.378 32.522 -1.537 1 93.48 ? C4 37X 304 A 1 HETATM 10 O O4 37X . . . F 3 -2.58 31.756 -1.549 1 93.67 ? O4 37X 304 A 1 HETATM 11 C C5 37X . . . F 3 -1.513 33.658 -0.524 1 93.32 ? C5 37X 304 A 1 HETATM 12 O O5 37X . . . F 3 -0.261 34.366 -0.413 1 92.84 ? O5 37X 304 A 1 HETATM 13 C C6 37X . . . F 3 -2.569 34.673 -0.903 1 93.42 ? C6 37X 304 A 1 HETATM 14 O O6 37X . . . F 3 -2.957 35.459 0.215 1 93.46 ? O6 37X 304 A 1 HETATM 15 O OAP 37X . . . F 3 0.841 38.641 -1.834 1 83.3 ? OAP 37X 304 A 1 HETATM 16 C CBC 37X . . . F 3 4.794 40.088 7.335 1 83.76 ? CBC 37X 304 A 1 HETATM 17 C CBE 37X . . . F 3 4.833 40.049 5.835 1 83.95 ? CBE 37X 304 A 1 HETATM 18 C CBG 37X . . . F 3 4.384 38.721 5.29 1 84.41 ? CBG 37X 304 A 1 HETATM 19 C CBI 37X . . . F 3 4.32 38.646 3.776 1 84.97 ? CBI 37X 304 A 1 HETATM 20 C CBK 37X . . . F 3 3.703 37.355 3.267 1 85.6 ? CBK 37X 304 A 1 HETATM 21 C CBP 37X . . . F 3 5.52 37.483 -4.748 1 83.22 ? CBP 37X 304 A 1 HETATM 22 C CBQ 37X . . . F 3 3.588 37.31 1.748 1 86.23 ? CBQ 37X 304 A 1 HETATM 23 C CBR 37X . . . F 3 4.515 34.945 1.697 1 86.95 ? CBR 37X 304 A 1 HETATM 24 C CBS 37X . . . F 3 2.098 35.313 1.16 1 88.88 ? CBS 37X 304 A 1 HETATM 25 C CBT 37X . . . F 3 3.853 36.135 -0.388 1 86.01 ? CBT 37X 304 A 1 HETATM 26 O OBV 37X . . . F 3 2.757 36.746 -1.045 1 84.98 ? OBV 37X 304 A 1 HETATM 27 O OBX 37X . . . F 3 4.05 37.21 -2.904 1 83.77 ? OBX 37X 304 A 1 HETATM 28 O OCB 37X . . . F 3 3.562 39.474 -5.761 1 83.36 ? OCB 37X 304 A 1 HETATM 29 C CCF 37X . . . F 3 4.432 38.142 -3.938 1 83.42 ? CCF 37X 304 A 1 HETATM 30 C CCH 37X . . . F 3 2.151 39.11 -3.812 1 83.34 ? CCH 37X 304 A 1 HETATM 31 C CCJ 37X . . . F 3 3.076 37.707 -1.992 1 84.07 ? CCJ 37X 304 A 1 HETATM 32 C CCL 37X . . . F 3 1.797 38.094 -2.732 1 83.49 ? CCL 37X 304 A 1 HETATM 33 C CCM 37X . . . F 3 3.497 35.923 1.082 1 86.95 ? CCM 37X 304 A 1 HETATM 34 C CCQ 37X . . . F 3 3.203 38.533 -4.757 1 83.28 ? CCQ 37X 304 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #