data_6Y7F
#
_model_server_result.job_id            LbOP8n3pCwrkEvRsJ5GmeQ 
_model_server_result.datetime_utc      '2024-11-24 00:27:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y7f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    6Y7F 
#
_exptl.entry_id    6Y7F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.695 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Octyl Glucose Neopentyl Glycol' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.03 
_cell.angle_gamma         90 
_cell.entry_id            6Y7F 
_cell.length_a            63.229 
_cell.length_b            72.459 
_cell.length_c            112.043 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y7F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 99 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 B SG CYS 99 B CYS 99 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
covale ? covale1 A NE2 HIS 150 A HIS 150 1_555 C C25 OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale2 A NE2 HIS 181 A HIS 181 1_555 C C OFN . A OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? 
covale ? covale3 B NE2 HIS 150 B HIS 150 1_555 H C25 OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? 
covale ? covale4 B NE2 HIS 181 B HIS 181 1_555 H C OFN . B OFN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.516 ? 
#
_chem_comp.formula           'C27 H52 O12' 
_chem_comp.formula_weight    568.695 
_chem_comp.id                37X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Octyl Glucose Neopentyl Glycol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 37X sing 1 n n 
O3 C3 37X sing 2 n n 
C3 C4 37X sing 3 n n 
C3 C2 37X sing 4 n n 
C4 C5 37X sing 5 n n 
O6 C6 37X sing 6 n n 
O2 C2 37X sing 7 n n 
C5 C6 37X sing 8 n n 
C5 O5 37X sing 9 n n 
C2 C1 37X sing 10 n n 
CBC CBE 37X sing 11 n n 
CBE CBG 37X sing 12 n n 
C1 O5 37X sing 13 n n 
C1 O1 37X sing 14 n n 
CBG CBI 37X sing 15 n n 
O1 CBS 37X sing 16 n n 
CBI CBK 37X sing 17 n n 
CBS CCM 37X sing 18 n n 
CBK CBQ 37X sing 19 n n 
CBQ CCM 37X sing 20 n n 
CCM CBT 37X sing 21 n n 
CCM CBR 37X sing 22 n n 
CBT OBV 37X sing 23 n n 
CBR CBL 37X sing 24 n n 
OBV CCJ 37X sing 25 n n 
OAP CCL 37X sing 26 n n 
CCL CCJ 37X sing 27 n n 
CCL CCH 37X sing 28 n n 
OAN CCH 37X sing 29 n n 
CCJ OBX 37X sing 30 n n 
CBL CBJ 37X sing 31 n n 
OBX CCF 37X sing 32 n n 
CCH CCQ 37X sing 33 n n 
CCQ CCF 37X sing 34 n n 
CCQ OCB 37X sing 35 n n 
CBJ CBH 37X sing 36 n n 
CCF CBP 37X sing 37 n n 
CBP OAL 37X sing 38 n n 
CBH CBF 37X sing 39 n n 
CBF CBD 37X sing 40 n n 
OAL H1 37X sing 41 n n 
OAN H2 37X sing 42 n n 
C1 H3 37X sing 43 n n 
C2 H4 37X sing 44 n n 
O2 H5 37X sing 45 n n 
C3 H6 37X sing 46 n n 
O3 H7 37X sing 47 n n 
C4 H8 37X sing 48 n n 
O4 H9 37X sing 49 n n 
C5 H10 37X sing 50 n n 
C6 H11 37X sing 51 n n 
C6 H12 37X sing 52 n n 
O6 H13 37X sing 53 n n 
OAP H14 37X sing 54 n n 
CBC H15 37X sing 55 n n 
CBC H16 37X sing 56 n n 
CBC H17 37X sing 57 n n 
CBD H18 37X sing 58 n n 
CBD H19 37X sing 59 n n 
CBD H20 37X sing 60 n n 
CBE H21 37X sing 61 n n 
CBE H22 37X sing 62 n n 
CBF H23 37X sing 63 n n 
CBF H24 37X sing 64 n n 
CBG H25 37X sing 65 n n 
CBG H26 37X sing 66 n n 
CBH H27 37X sing 67 n n 
CBH H28 37X sing 68 n n 
CBI H29 37X sing 69 n n 
CBI H30 37X sing 70 n n 
CBJ H31 37X sing 71 n n 
CBJ H32 37X sing 72 n n 
CBK H33 37X sing 73 n n 
CBK H34 37X sing 74 n n 
CBL H35 37X sing 75 n n 
CBL H36 37X sing 76 n n 
CBP H37 37X sing 77 n n 
CBP H38 37X sing 78 n n 
CBQ H39 37X sing 79 n n 
CBQ H40 37X sing 80 n n 
CBR H41 37X sing 81 n n 
CBR H42 37X sing 82 n n 
CBS H43 37X sing 83 n n 
CBS H44 37X sing 84 n n 
CBT H45 37X sing 85 n n 
CBT H46 37X sing 86 n n 
OCB H47 37X sing 87 n n 
CCF H48 37X sing 88 n n 
CCH H49 37X sing 89 n n 
CCJ H50 37X sing 90 n n 
CCL H51 37X sing 91 n n 
CCQ H52 37X sing 92 n n 
#
_atom_sites.entry_id                     6Y7F 
_atom_sites.fract_transf_matrix[1][1]    0.015816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002797 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OFN A 1 301 301 OFN MLS . 
D 3 37X A 1 302 501 37X 37X . 
E 3 37X A 1 303 601 37X 37X . 
F 3 37X A 1 304 701 37X 37X . 
G 4 CL A 1 305 1 CL CL . 
H 2 OFN B 1 301 301 OFN MLS . 
I 3 37X B 1 302 401 37X 37X . 
J 4 CL B 1 303 2 CL CL . 
K 5 HOH A 1 401 114 HOH HOH . 
K 5 HOH A 2 402 27 HOH HOH . 
K 5 HOH A 3 403 40 HOH HOH . 
K 5 HOH A 4 404 57 HOH HOH . 
K 5 HOH A 5 405 76 HOH HOH . 
K 5 HOH A 6 406 87 HOH HOH . 
K 5 HOH A 7 407 4 HOH HOH . 
K 5 HOH A 8 408 5 HOH HOH . 
K 5 HOH A 9 409 72 HOH HOH . 
K 5 HOH A 10 410 36 HOH HOH . 
K 5 HOH A 11 411 74 HOH HOH . 
K 5 HOH A 12 412 39 HOH HOH . 
K 5 HOH A 13 413 35 HOH HOH . 
K 5 HOH A 14 414 1 HOH HOH . 
K 5 HOH A 15 415 100 HOH HOH . 
K 5 HOH A 16 416 66 HOH HOH . 
K 5 HOH A 17 417 49 HOH HOH . 
K 5 HOH A 18 418 41 HOH HOH . 
K 5 HOH A 19 419 30 HOH HOH . 
K 5 HOH A 20 420 37 HOH HOH . 
K 5 HOH A 21 421 79 HOH HOH . 
K 5 HOH A 22 422 62 HOH HOH . 
K 5 HOH A 23 423 15 HOH HOH . 
K 5 HOH A 24 424 60 HOH HOH . 
K 5 HOH A 25 425 21 HOH HOH . 
K 5 HOH A 26 426 102 HOH HOH . 
K 5 HOH A 27 427 14 HOH HOH . 
K 5 HOH A 28 428 34 HOH HOH . 
K 5 HOH A 29 429 3 HOH HOH . 
K 5 HOH A 30 430 16 HOH HOH . 
K 5 HOH A 31 431 101 HOH HOH . 
K 5 HOH A 32 432 69 HOH HOH . 
K 5 HOH A 33 433 71 HOH HOH . 
K 5 HOH A 34 434 97 HOH HOH . 
K 5 HOH A 35 435 17 HOH HOH . 
K 5 HOH A 36 436 95 HOH HOH . 
K 5 HOH A 37 437 13 HOH HOH . 
K 5 HOH A 38 438 70 HOH HOH . 
K 5 HOH A 39 439 65 HOH HOH . 
K 5 HOH A 40 440 67 HOH HOH . 
K 5 HOH A 41 441 106 HOH HOH . 
K 5 HOH A 42 442 64 HOH HOH . 
K 5 HOH A 43 443 111 HOH HOH . 
K 5 HOH A 44 444 38 HOH HOH . 
K 5 HOH A 45 445 8 HOH HOH . 
K 5 HOH A 46 446 42 HOH HOH . 
K 5 HOH A 47 447 9 HOH HOH . 
K 5 HOH A 48 448 59 HOH HOH . 
K 5 HOH A 49 449 98 HOH HOH . 
K 5 HOH A 50 450 115 HOH HOH . 
K 5 HOH A 51 451 89 HOH HOH . 
K 5 HOH A 52 452 78 HOH HOH . 
K 5 HOH A 53 453 85 HOH HOH . 
K 5 HOH A 54 454 22 HOH HOH . 
K 5 HOH A 55 455 103 HOH HOH . 
K 5 HOH A 56 456 94 HOH HOH . 
K 5 HOH A 57 457 88 HOH HOH . 
K 5 HOH A 58 458 112 HOH HOH . 
K 5 HOH A 59 459 80 HOH HOH . 
K 5 HOH A 60 460 75 HOH HOH . 
K 5 HOH A 61 461 96 HOH HOH . 
L 5 HOH B 1 401 48 HOH HOH . 
L 5 HOH B 2 402 104 HOH HOH . 
L 5 HOH B 3 403 68 HOH HOH . 
L 5 HOH B 4 404 53 HOH HOH . 
L 5 HOH B 5 405 45 HOH HOH . 
L 5 HOH B 6 406 50 HOH HOH . 
L 5 HOH B 7 407 28 HOH HOH . 
L 5 HOH B 8 408 43 HOH HOH . 
L 5 HOH B 9 409 19 HOH HOH . 
L 5 HOH B 10 410 51 HOH HOH . 
L 5 HOH B 11 411 6 HOH HOH . 
L 5 HOH B 12 412 47 HOH HOH . 
L 5 HOH B 13 413 44 HOH HOH . 
L 5 HOH B 14 414 24 HOH HOH . 
L 5 HOH B 15 415 55 HOH HOH . 
L 5 HOH B 16 416 23 HOH HOH . 
L 5 HOH B 17 417 2 HOH HOH . 
L 5 HOH B 18 418 32 HOH HOH . 
L 5 HOH B 19 419 90 HOH HOH . 
L 5 HOH B 20 420 12 HOH HOH . 
L 5 HOH B 21 421 54 HOH HOH . 
L 5 HOH B 22 422 84 HOH HOH . 
L 5 HOH B 23 423 52 HOH HOH . 
L 5 HOH B 24 424 82 HOH HOH . 
L 5 HOH B 25 425 91 HOH HOH . 
L 5 HOH B 26 426 33 HOH HOH . 
L 5 HOH B 27 427 18 HOH HOH . 
L 5 HOH B 28 428 25 HOH HOH . 
L 5 HOH B 29 429 108 HOH HOH . 
L 5 HOH B 30 430 83 HOH HOH . 
L 5 HOH B 31 431 31 HOH HOH . 
L 5 HOH B 32 432 20 HOH HOH . 
L 5 HOH B 33 433 61 HOH HOH . 
L 5 HOH B 34 434 7 HOH HOH . 
L 5 HOH B 35 435 63 HOH HOH . 
L 5 HOH B 36 436 99 HOH HOH . 
L 5 HOH B 37 437 113 HOH HOH . 
L 5 HOH B 38 438 10 HOH HOH . 
L 5 HOH B 39 439 46 HOH HOH . 
L 5 HOH B 40 440 109 HOH HOH . 
L 5 HOH B 41 441 73 HOH HOH . 
L 5 HOH B 42 442 105 HOH HOH . 
L 5 HOH B 43 443 58 HOH HOH . 
L 5 HOH B 44 444 86 HOH HOH . 
L 5 HOH B 45 445 11 HOH HOH . 
L 5 HOH B 46 446 93 HOH HOH . 
L 5 HOH B 47 447 107 HOH HOH . 
L 5 HOH B 48 448 26 HOH HOH . 
L 5 HOH B 49 449 110 HOH HOH . 
L 5 HOH B 50 450 92 HOH HOH . 
L 5 HOH B 51 451 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAL 37X . . . F 3 6.696 37.326 -3.973 1 82.99 ? OAL 37X 304 A 1 
HETATM 2 O OAN 37X . . . F 3 0.99 39.559 -4.498 1 83.34 ? OAN 37X 304 A 1 
HETATM 3 C C1 37X . . . F 3 0.813 33.551 0.03 1 92.22 ? C1 37X 304 A 1 
HETATM 4 O O1 37X . . . F 3 1.988 34.292 0.178 1 90.67 ? O1 37X 304 A 1 
HETATM 5 C C2 37X . . . F 3 1.086 32.444 -0.985 1 92.96 ? C2 37X 304 A 1 
HETATM 6 O O2 37X . . . F 3 2.132 31.596 -0.517 1 93.2 ? O2 37X 304 A 1 
HETATM 7 C C3 37X . . . F 3 -0.184 31.628 -1.202 1 93.32 ? C3 37X 304 A 1 
HETATM 8 O O3 37X . . . F 3 0.033 30.678 -2.242 1 93.39 ? O3 37X 304 A 1 
HETATM 9 C C4 37X . . . F 3 -1.378 32.522 -1.537 1 93.48 ? C4 37X 304 A 1 
HETATM 10 O O4 37X . . . F 3 -2.58 31.756 -1.549 1 93.67 ? O4 37X 304 A 1 
HETATM 11 C C5 37X . . . F 3 -1.513 33.658 -0.524 1 93.32 ? C5 37X 304 A 1 
HETATM 12 O O5 37X . . . F 3 -0.261 34.366 -0.413 1 92.84 ? O5 37X 304 A 1 
HETATM 13 C C6 37X . . . F 3 -2.569 34.673 -0.903 1 93.42 ? C6 37X 304 A 1 
HETATM 14 O O6 37X . . . F 3 -2.957 35.459 0.215 1 93.46 ? O6 37X 304 A 1 
HETATM 15 O OAP 37X . . . F 3 0.841 38.641 -1.834 1 83.3 ? OAP 37X 304 A 1 
HETATM 16 C CBC 37X . . . F 3 4.794 40.088 7.335 1 83.76 ? CBC 37X 304 A 1 
HETATM 17 C CBE 37X . . . F 3 4.833 40.049 5.835 1 83.95 ? CBE 37X 304 A 1 
HETATM 18 C CBG 37X . . . F 3 4.384 38.721 5.29 1 84.41 ? CBG 37X 304 A 1 
HETATM 19 C CBI 37X . . . F 3 4.32 38.646 3.776 1 84.97 ? CBI 37X 304 A 1 
HETATM 20 C CBK 37X . . . F 3 3.703 37.355 3.267 1 85.6 ? CBK 37X 304 A 1 
HETATM 21 C CBP 37X . . . F 3 5.52 37.483 -4.748 1 83.22 ? CBP 37X 304 A 1 
HETATM 22 C CBQ 37X . . . F 3 3.588 37.31 1.748 1 86.23 ? CBQ 37X 304 A 1 
HETATM 23 C CBR 37X . . . F 3 4.515 34.945 1.697 1 86.95 ? CBR 37X 304 A 1 
HETATM 24 C CBS 37X . . . F 3 2.098 35.313 1.16 1 88.88 ? CBS 37X 304 A 1 
HETATM 25 C CBT 37X . . . F 3 3.853 36.135 -0.388 1 86.01 ? CBT 37X 304 A 1 
HETATM 26 O OBV 37X . . . F 3 2.757 36.746 -1.045 1 84.98 ? OBV 37X 304 A 1 
HETATM 27 O OBX 37X . . . F 3 4.05 37.21 -2.904 1 83.77 ? OBX 37X 304 A 1 
HETATM 28 O OCB 37X . . . F 3 3.562 39.474 -5.761 1 83.36 ? OCB 37X 304 A 1 
HETATM 29 C CCF 37X . . . F 3 4.432 38.142 -3.938 1 83.42 ? CCF 37X 304 A 1 
HETATM 30 C CCH 37X . . . F 3 2.151 39.11 -3.812 1 83.34 ? CCH 37X 304 A 1 
HETATM 31 C CCJ 37X . . . F 3 3.076 37.707 -1.992 1 84.07 ? CCJ 37X 304 A 1 
HETATM 32 C CCL 37X . . . F 3 1.797 38.094 -2.732 1 83.49 ? CCL 37X 304 A 1 
HETATM 33 C CCM 37X . . . F 3 3.497 35.923 1.082 1 86.95 ? CCM 37X 304 A 1 
HETATM 34 C CCQ 37X . . . F 3 3.203 38.533 -4.757 1 83.28 ? CCQ 37X 304 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#