data_6Y7M # _model_server_result.job_id EIkNZWlHSuBizLZ4cNd0UA _model_server_result.datetime_utc '2024-11-21 10:17:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6Y7M # _exptl.entry_id 6Y7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.465 _cell.angle_gamma 90 _cell.entry_id 6Y7M _cell.length_a 107.905 _cell.length_b 82.247 _cell.length_c 53.131 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C57 _struct_conn.ptnr2_label_comp_id OEW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id OEW _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6Y7M _atom_sites.fract_transf_matrix[1][1] 0.009267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002391 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OEW AAA 1 401 401 OEW 13a . C 3 DMS AAA 1 402 501 DMS DMS . D 4 HOH AAA 1 501 31 HOH HOH . D 4 HOH AAA 2 502 9 HOH HOH . D 4 HOH AAA 3 503 75 HOH HOH . D 4 HOH AAA 4 504 36 HOH HOH . D 4 HOH AAA 5 505 177 HOH HOH . D 4 HOH AAA 6 506 62 HOH HOH . D 4 HOH AAA 7 507 165 HOH HOH . D 4 HOH AAA 8 508 127 HOH HOH . D 4 HOH AAA 9 509 122 HOH HOH . D 4 HOH AAA 10 510 64 HOH HOH . D 4 HOH AAA 11 511 39 HOH HOH . D 4 HOH AAA 12 512 76 HOH HOH . D 4 HOH AAA 13 513 157 HOH HOH . D 4 HOH AAA 14 514 199 HOH HOH . D 4 HOH AAA 15 515 6 HOH HOH . D 4 HOH AAA 16 516 94 HOH HOH . D 4 HOH AAA 17 517 7 HOH HOH . D 4 HOH AAA 18 518 171 HOH HOH . D 4 HOH AAA 19 519 211 HOH HOH . D 4 HOH AAA 20 520 140 HOH HOH . D 4 HOH AAA 21 521 163 HOH HOH . D 4 HOH AAA 22 522 16 HOH HOH . D 4 HOH AAA 23 523 196 HOH HOH . D 4 HOH AAA 24 524 34 HOH HOH . D 4 HOH AAA 25 525 33 HOH HOH . D 4 HOH AAA 26 526 27 HOH HOH . D 4 HOH AAA 27 527 136 HOH HOH . D 4 HOH AAA 28 528 123 HOH HOH . D 4 HOH AAA 29 529 10 HOH HOH . D 4 HOH AAA 30 530 213 HOH HOH . D 4 HOH AAA 31 531 109 HOH HOH . D 4 HOH AAA 32 532 5 HOH HOH . D 4 HOH AAA 33 533 74 HOH HOH . D 4 HOH AAA 34 534 164 HOH HOH . D 4 HOH AAA 35 535 132 HOH HOH . D 4 HOH AAA 36 536 54 HOH HOH . D 4 HOH AAA 37 537 42 HOH HOH . D 4 HOH AAA 38 538 174 HOH HOH . D 4 HOH AAA 39 539 37 HOH HOH . D 4 HOH AAA 40 540 168 HOH HOH . D 4 HOH AAA 41 541 28 HOH HOH . D 4 HOH AAA 42 542 116 HOH HOH . D 4 HOH AAA 43 543 119 HOH HOH . D 4 HOH AAA 44 544 103 HOH HOH . D 4 HOH AAA 45 545 160 HOH HOH . D 4 HOH AAA 46 546 101 HOH HOH . D 4 HOH AAA 47 547 226 HOH HOH . D 4 HOH AAA 48 548 155 HOH HOH . D 4 HOH AAA 49 549 134 HOH HOH . D 4 HOH AAA 50 550 88 HOH HOH . D 4 HOH AAA 51 551 57 HOH HOH . D 4 HOH AAA 52 552 45 HOH HOH . D 4 HOH AAA 53 553 12 HOH HOH . D 4 HOH AAA 54 554 2 HOH HOH . D 4 HOH AAA 55 555 112 HOH HOH . D 4 HOH AAA 56 556 114 HOH HOH . D 4 HOH AAA 57 557 71 HOH HOH . D 4 HOH AAA 58 558 14 HOH HOH . D 4 HOH AAA 59 559 225 HOH HOH . D 4 HOH AAA 60 560 1 HOH HOH . D 4 HOH AAA 61 561 20 HOH HOH . D 4 HOH AAA 62 562 4 HOH HOH . D 4 HOH AAA 63 563 3 HOH HOH . D 4 HOH AAA 64 564 68 HOH HOH . D 4 HOH AAA 65 565 73 HOH HOH . D 4 HOH AAA 66 566 30 HOH HOH . D 4 HOH AAA 67 567 81 HOH HOH . D 4 HOH AAA 68 568 89 HOH HOH . D 4 HOH AAA 69 569 189 HOH HOH . D 4 HOH AAA 70 570 108 HOH HOH . D 4 HOH AAA 71 571 11 HOH HOH . D 4 HOH AAA 72 572 141 HOH HOH . D 4 HOH AAA 73 573 19 HOH HOH . D 4 HOH AAA 74 574 67 HOH HOH . D 4 HOH AAA 75 575 24 HOH HOH . D 4 HOH AAA 76 576 205 HOH HOH . D 4 HOH AAA 77 577 44 HOH HOH . D 4 HOH AAA 78 578 104 HOH HOH . D 4 HOH AAA 79 579 47 HOH HOH . D 4 HOH AAA 80 580 32 HOH HOH . D 4 HOH AAA 81 581 40 HOH HOH . D 4 HOH AAA 82 582 148 HOH HOH . D 4 HOH AAA 83 583 188 HOH HOH . D 4 HOH AAA 84 584 48 HOH HOH . D 4 HOH AAA 85 585 178 HOH HOH . D 4 HOH AAA 86 586 113 HOH HOH . D 4 HOH AAA 87 587 18 HOH HOH . D 4 HOH AAA 88 588 93 HOH HOH . D 4 HOH AAA 89 589 59 HOH HOH . D 4 HOH AAA 90 590 26 HOH HOH . D 4 HOH AAA 91 591 82 HOH HOH . D 4 HOH AAA 92 592 98 HOH HOH . D 4 HOH AAA 93 593 223 HOH HOH . D 4 HOH AAA 94 594 38 HOH HOH . D 4 HOH AAA 95 595 25 HOH HOH . D 4 HOH AAA 96 596 151 HOH HOH . D 4 HOH AAA 97 597 63 HOH HOH . D 4 HOH AAA 98 598 124 HOH HOH . D 4 HOH AAA 99 599 181 HOH HOH . D 4 HOH AAA 100 600 146 HOH HOH . D 4 HOH AAA 101 601 65 HOH HOH . D 4 HOH AAA 102 602 200 HOH HOH . D 4 HOH AAA 103 603 90 HOH HOH . D 4 HOH AAA 104 604 128 HOH HOH . D 4 HOH AAA 105 605 197 HOH HOH . D 4 HOH AAA 106 606 99 HOH HOH . D 4 HOH AAA 107 607 115 HOH HOH . D 4 HOH AAA 108 608 21 HOH HOH . D 4 HOH AAA 109 609 212 HOH HOH . D 4 HOH AAA 110 610 23 HOH HOH . D 4 HOH AAA 111 611 117 HOH HOH . D 4 HOH AAA 112 612 106 HOH HOH . D 4 HOH AAA 113 613 87 HOH HOH . D 4 HOH AAA 114 614 150 HOH HOH . D 4 HOH AAA 115 615 41 HOH HOH . D 4 HOH AAA 116 616 131 HOH HOH . D 4 HOH AAA 117 617 185 HOH HOH . D 4 HOH AAA 118 618 92 HOH HOH . D 4 HOH AAA 119 619 53 HOH HOH . D 4 HOH AAA 120 620 158 HOH HOH . D 4 HOH AAA 121 621 51 HOH HOH . D 4 HOH AAA 122 622 173 HOH HOH . D 4 HOH AAA 123 623 154 HOH HOH . D 4 HOH AAA 124 624 70 HOH HOH . D 4 HOH AAA 125 625 202 HOH HOH . D 4 HOH AAA 126 626 135 HOH HOH . D 4 HOH AAA 127 627 86 HOH HOH . D 4 HOH AAA 128 628 66 HOH HOH . D 4 HOH AAA 129 629 137 HOH HOH . D 4 HOH AAA 130 630 121 HOH HOH . D 4 HOH AAA 131 631 110 HOH HOH . D 4 HOH AAA 132 632 72 HOH HOH . D 4 HOH AAA 133 633 214 HOH HOH . D 4 HOH AAA 134 634 120 HOH HOH . D 4 HOH AAA 135 635 13 HOH HOH . D 4 HOH AAA 136 636 91 HOH HOH . D 4 HOH AAA 137 637 156 HOH HOH . D 4 HOH AAA 138 638 224 HOH HOH . D 4 HOH AAA 139 639 147 HOH HOH . D 4 HOH AAA 140 640 190 HOH HOH . D 4 HOH AAA 141 641 207 HOH HOH . D 4 HOH AAA 142 642 203 HOH HOH . D 4 HOH AAA 143 643 195 HOH HOH . D 4 HOH AAA 144 644 15 HOH HOH . D 4 HOH AAA 145 645 166 HOH HOH . D 4 HOH AAA 146 646 142 HOH HOH . D 4 HOH AAA 147 647 193 HOH HOH . D 4 HOH AAA 148 648 78 HOH HOH . D 4 HOH AAA 149 649 58 HOH HOH . D 4 HOH AAA 150 650 29 HOH HOH . D 4 HOH AAA 151 651 208 HOH HOH . D 4 HOH AAA 152 652 216 HOH HOH . D 4 HOH AAA 153 653 210 HOH HOH . D 4 HOH AAA 154 654 220 HOH HOH . D 4 HOH AAA 155 655 215 HOH HOH . D 4 HOH AAA 156 656 22 HOH HOH . D 4 HOH AAA 157 657 95 HOH HOH . D 4 HOH AAA 158 658 218 HOH HOH . D 4 HOH AAA 159 659 172 HOH HOH . D 4 HOH AAA 160 660 206 HOH HOH . D 4 HOH AAA 161 661 8 HOH HOH . D 4 HOH AAA 162 662 169 HOH HOH . D 4 HOH AAA 163 663 162 HOH HOH . D 4 HOH AAA 164 664 170 HOH HOH . D 4 HOH AAA 165 665 187 HOH HOH . D 4 HOH AAA 166 666 97 HOH HOH . D 4 HOH AAA 167 667 69 HOH HOH . D 4 HOH AAA 168 668 60 HOH HOH . D 4 HOH AAA 169 669 133 HOH HOH . D 4 HOH AAA 170 670 175 HOH HOH . D 4 HOH AAA 171 671 217 HOH HOH . D 4 HOH AAA 172 672 143 HOH HOH . D 4 HOH AAA 173 673 222 HOH HOH . D 4 HOH AAA 174 674 219 HOH HOH . D 4 HOH AAA 175 675 35 HOH HOH . D 4 HOH AAA 176 676 61 HOH HOH . D 4 HOH AAA 177 677 221 HOH HOH . D 4 HOH AAA 178 678 186 HOH HOH . D 4 HOH AAA 179 679 56 HOH HOH . D 4 HOH AAA 180 680 182 HOH HOH . D 4 HOH AAA 181 681 102 HOH HOH . D 4 HOH AAA 182 682 161 HOH HOH . D 4 HOH AAA 183 683 149 HOH HOH . D 4 HOH AAA 184 684 192 HOH HOH . D 4 HOH AAA 185 685 118 HOH HOH . D 4 HOH AAA 186 686 107 HOH HOH . D 4 HOH AAA 187 687 198 HOH HOH . D 4 HOH AAA 188 688 129 HOH HOH . D 4 HOH AAA 189 689 194 HOH HOH . D 4 HOH AAA 190 690 159 HOH HOH . D 4 HOH AAA 191 691 153 HOH HOH . D 4 HOH AAA 192 692 201 HOH HOH . D 4 HOH AAA 193 693 144 HOH HOH . D 4 HOH AAA 194 694 167 HOH HOH . D 4 HOH AAA 195 695 179 HOH HOH . D 4 HOH AAA 196 696 183 HOH HOH . D 4 HOH AAA 197 697 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -25.625 -35.991 7.323 1 112.98 ? S DMS 402 AAA 1 HETATM 2 O O DMS . . . C 3 -26.786 -36.487 8.172 1 69.5 ? O DMS 402 AAA 1 HETATM 3 C C1 DMS . . . C 3 -26.008 -34.308 6.872 1 102.52 ? C1 DMS 402 AAA 1 HETATM 4 C C2 DMS . . . C 3 -25.81 -36.727 5.724 1 100.27 ? C2 DMS 402 AAA 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #