data_6Y7M
#
_model_server_result.job_id            qogo93e-y_5XrxfiPFpg3g 
_model_server_result.datetime_utc      '2024-11-13 20:47:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6y7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6Y7M 
#
_exptl.entry_id    6Y7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.465 
_cell.angle_gamma         90 
_cell.entry_id            6Y7M 
_cell.length_a            107.905 
_cell.length_b            82.247 
_cell.length_c            53.131 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Y7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             145 
_struct_conn.ptnr1_auth_asym_id             AAA 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              145 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C57 
_struct_conn.ptnr2_label_comp_id            OEW 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             AAA 
_struct_conn.ptnr2_auth_comp_id             OEW 
_struct_conn.ptnr2_auth_seq_id              401 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.766 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     6Y7M 
_atom_sites.fract_transf_matrix[1][1]    0.009267 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002391 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019438 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OEW AAA 1 401 401 OEW 13a . 
C 3 DMS AAA 1 402 501 DMS DMS . 
D 4 HOH AAA 1 501 31 HOH HOH . 
D 4 HOH AAA 2 502 9 HOH HOH . 
D 4 HOH AAA 3 503 75 HOH HOH . 
D 4 HOH AAA 4 504 36 HOH HOH . 
D 4 HOH AAA 5 505 177 HOH HOH . 
D 4 HOH AAA 6 506 62 HOH HOH . 
D 4 HOH AAA 7 507 165 HOH HOH . 
D 4 HOH AAA 8 508 127 HOH HOH . 
D 4 HOH AAA 9 509 122 HOH HOH . 
D 4 HOH AAA 10 510 64 HOH HOH . 
D 4 HOH AAA 11 511 39 HOH HOH . 
D 4 HOH AAA 12 512 76 HOH HOH . 
D 4 HOH AAA 13 513 157 HOH HOH . 
D 4 HOH AAA 14 514 199 HOH HOH . 
D 4 HOH AAA 15 515 6 HOH HOH . 
D 4 HOH AAA 16 516 94 HOH HOH . 
D 4 HOH AAA 17 517 7 HOH HOH . 
D 4 HOH AAA 18 518 171 HOH HOH . 
D 4 HOH AAA 19 519 211 HOH HOH . 
D 4 HOH AAA 20 520 140 HOH HOH . 
D 4 HOH AAA 21 521 163 HOH HOH . 
D 4 HOH AAA 22 522 16 HOH HOH . 
D 4 HOH AAA 23 523 196 HOH HOH . 
D 4 HOH AAA 24 524 34 HOH HOH . 
D 4 HOH AAA 25 525 33 HOH HOH . 
D 4 HOH AAA 26 526 27 HOH HOH . 
D 4 HOH AAA 27 527 136 HOH HOH . 
D 4 HOH AAA 28 528 123 HOH HOH . 
D 4 HOH AAA 29 529 10 HOH HOH . 
D 4 HOH AAA 30 530 213 HOH HOH . 
D 4 HOH AAA 31 531 109 HOH HOH . 
D 4 HOH AAA 32 532 5 HOH HOH . 
D 4 HOH AAA 33 533 74 HOH HOH . 
D 4 HOH AAA 34 534 164 HOH HOH . 
D 4 HOH AAA 35 535 132 HOH HOH . 
D 4 HOH AAA 36 536 54 HOH HOH . 
D 4 HOH AAA 37 537 42 HOH HOH . 
D 4 HOH AAA 38 538 174 HOH HOH . 
D 4 HOH AAA 39 539 37 HOH HOH . 
D 4 HOH AAA 40 540 168 HOH HOH . 
D 4 HOH AAA 41 541 28 HOH HOH . 
D 4 HOH AAA 42 542 116 HOH HOH . 
D 4 HOH AAA 43 543 119 HOH HOH . 
D 4 HOH AAA 44 544 103 HOH HOH . 
D 4 HOH AAA 45 545 160 HOH HOH . 
D 4 HOH AAA 46 546 101 HOH HOH . 
D 4 HOH AAA 47 547 226 HOH HOH . 
D 4 HOH AAA 48 548 155 HOH HOH . 
D 4 HOH AAA 49 549 134 HOH HOH . 
D 4 HOH AAA 50 550 88 HOH HOH . 
D 4 HOH AAA 51 551 57 HOH HOH . 
D 4 HOH AAA 52 552 45 HOH HOH . 
D 4 HOH AAA 53 553 12 HOH HOH . 
D 4 HOH AAA 54 554 2 HOH HOH . 
D 4 HOH AAA 55 555 112 HOH HOH . 
D 4 HOH AAA 56 556 114 HOH HOH . 
D 4 HOH AAA 57 557 71 HOH HOH . 
D 4 HOH AAA 58 558 14 HOH HOH . 
D 4 HOH AAA 59 559 225 HOH HOH . 
D 4 HOH AAA 60 560 1 HOH HOH . 
D 4 HOH AAA 61 561 20 HOH HOH . 
D 4 HOH AAA 62 562 4 HOH HOH . 
D 4 HOH AAA 63 563 3 HOH HOH . 
D 4 HOH AAA 64 564 68 HOH HOH . 
D 4 HOH AAA 65 565 73 HOH HOH . 
D 4 HOH AAA 66 566 30 HOH HOH . 
D 4 HOH AAA 67 567 81 HOH HOH . 
D 4 HOH AAA 68 568 89 HOH HOH . 
D 4 HOH AAA 69 569 189 HOH HOH . 
D 4 HOH AAA 70 570 108 HOH HOH . 
D 4 HOH AAA 71 571 11 HOH HOH . 
D 4 HOH AAA 72 572 141 HOH HOH . 
D 4 HOH AAA 73 573 19 HOH HOH . 
D 4 HOH AAA 74 574 67 HOH HOH . 
D 4 HOH AAA 75 575 24 HOH HOH . 
D 4 HOH AAA 76 576 205 HOH HOH . 
D 4 HOH AAA 77 577 44 HOH HOH . 
D 4 HOH AAA 78 578 104 HOH HOH . 
D 4 HOH AAA 79 579 47 HOH HOH . 
D 4 HOH AAA 80 580 32 HOH HOH . 
D 4 HOH AAA 81 581 40 HOH HOH . 
D 4 HOH AAA 82 582 148 HOH HOH . 
D 4 HOH AAA 83 583 188 HOH HOH . 
D 4 HOH AAA 84 584 48 HOH HOH . 
D 4 HOH AAA 85 585 178 HOH HOH . 
D 4 HOH AAA 86 586 113 HOH HOH . 
D 4 HOH AAA 87 587 18 HOH HOH . 
D 4 HOH AAA 88 588 93 HOH HOH . 
D 4 HOH AAA 89 589 59 HOH HOH . 
D 4 HOH AAA 90 590 26 HOH HOH . 
D 4 HOH AAA 91 591 82 HOH HOH . 
D 4 HOH AAA 92 592 98 HOH HOH . 
D 4 HOH AAA 93 593 223 HOH HOH . 
D 4 HOH AAA 94 594 38 HOH HOH . 
D 4 HOH AAA 95 595 25 HOH HOH . 
D 4 HOH AAA 96 596 151 HOH HOH . 
D 4 HOH AAA 97 597 63 HOH HOH . 
D 4 HOH AAA 98 598 124 HOH HOH . 
D 4 HOH AAA 99 599 181 HOH HOH . 
D 4 HOH AAA 100 600 146 HOH HOH . 
D 4 HOH AAA 101 601 65 HOH HOH . 
D 4 HOH AAA 102 602 200 HOH HOH . 
D 4 HOH AAA 103 603 90 HOH HOH . 
D 4 HOH AAA 104 604 128 HOH HOH . 
D 4 HOH AAA 105 605 197 HOH HOH . 
D 4 HOH AAA 106 606 99 HOH HOH . 
D 4 HOH AAA 107 607 115 HOH HOH . 
D 4 HOH AAA 108 608 21 HOH HOH . 
D 4 HOH AAA 109 609 212 HOH HOH . 
D 4 HOH AAA 110 610 23 HOH HOH . 
D 4 HOH AAA 111 611 117 HOH HOH . 
D 4 HOH AAA 112 612 106 HOH HOH . 
D 4 HOH AAA 113 613 87 HOH HOH . 
D 4 HOH AAA 114 614 150 HOH HOH . 
D 4 HOH AAA 115 615 41 HOH HOH . 
D 4 HOH AAA 116 616 131 HOH HOH . 
D 4 HOH AAA 117 617 185 HOH HOH . 
D 4 HOH AAA 118 618 92 HOH HOH . 
D 4 HOH AAA 119 619 53 HOH HOH . 
D 4 HOH AAA 120 620 158 HOH HOH . 
D 4 HOH AAA 121 621 51 HOH HOH . 
D 4 HOH AAA 122 622 173 HOH HOH . 
D 4 HOH AAA 123 623 154 HOH HOH . 
D 4 HOH AAA 124 624 70 HOH HOH . 
D 4 HOH AAA 125 625 202 HOH HOH . 
D 4 HOH AAA 126 626 135 HOH HOH . 
D 4 HOH AAA 127 627 86 HOH HOH . 
D 4 HOH AAA 128 628 66 HOH HOH . 
D 4 HOH AAA 129 629 137 HOH HOH . 
D 4 HOH AAA 130 630 121 HOH HOH . 
D 4 HOH AAA 131 631 110 HOH HOH . 
D 4 HOH AAA 132 632 72 HOH HOH . 
D 4 HOH AAA 133 633 214 HOH HOH . 
D 4 HOH AAA 134 634 120 HOH HOH . 
D 4 HOH AAA 135 635 13 HOH HOH . 
D 4 HOH AAA 136 636 91 HOH HOH . 
D 4 HOH AAA 137 637 156 HOH HOH . 
D 4 HOH AAA 138 638 224 HOH HOH . 
D 4 HOH AAA 139 639 147 HOH HOH . 
D 4 HOH AAA 140 640 190 HOH HOH . 
D 4 HOH AAA 141 641 207 HOH HOH . 
D 4 HOH AAA 142 642 203 HOH HOH . 
D 4 HOH AAA 143 643 195 HOH HOH . 
D 4 HOH AAA 144 644 15 HOH HOH . 
D 4 HOH AAA 145 645 166 HOH HOH . 
D 4 HOH AAA 146 646 142 HOH HOH . 
D 4 HOH AAA 147 647 193 HOH HOH . 
D 4 HOH AAA 148 648 78 HOH HOH . 
D 4 HOH AAA 149 649 58 HOH HOH . 
D 4 HOH AAA 150 650 29 HOH HOH . 
D 4 HOH AAA 151 651 208 HOH HOH . 
D 4 HOH AAA 152 652 216 HOH HOH . 
D 4 HOH AAA 153 653 210 HOH HOH . 
D 4 HOH AAA 154 654 220 HOH HOH . 
D 4 HOH AAA 155 655 215 HOH HOH . 
D 4 HOH AAA 156 656 22 HOH HOH . 
D 4 HOH AAA 157 657 95 HOH HOH . 
D 4 HOH AAA 158 658 218 HOH HOH . 
D 4 HOH AAA 159 659 172 HOH HOH . 
D 4 HOH AAA 160 660 206 HOH HOH . 
D 4 HOH AAA 161 661 8 HOH HOH . 
D 4 HOH AAA 162 662 169 HOH HOH . 
D 4 HOH AAA 163 663 162 HOH HOH . 
D 4 HOH AAA 164 664 170 HOH HOH . 
D 4 HOH AAA 165 665 187 HOH HOH . 
D 4 HOH AAA 166 666 97 HOH HOH . 
D 4 HOH AAA 167 667 69 HOH HOH . 
D 4 HOH AAA 168 668 60 HOH HOH . 
D 4 HOH AAA 169 669 133 HOH HOH . 
D 4 HOH AAA 170 670 175 HOH HOH . 
D 4 HOH AAA 171 671 217 HOH HOH . 
D 4 HOH AAA 172 672 143 HOH HOH . 
D 4 HOH AAA 173 673 222 HOH HOH . 
D 4 HOH AAA 174 674 219 HOH HOH . 
D 4 HOH AAA 175 675 35 HOH HOH . 
D 4 HOH AAA 176 676 61 HOH HOH . 
D 4 HOH AAA 177 677 221 HOH HOH . 
D 4 HOH AAA 178 678 186 HOH HOH . 
D 4 HOH AAA 179 679 56 HOH HOH . 
D 4 HOH AAA 180 680 182 HOH HOH . 
D 4 HOH AAA 181 681 102 HOH HOH . 
D 4 HOH AAA 182 682 161 HOH HOH . 
D 4 HOH AAA 183 683 149 HOH HOH . 
D 4 HOH AAA 184 684 192 HOH HOH . 
D 4 HOH AAA 185 685 118 HOH HOH . 
D 4 HOH AAA 186 686 107 HOH HOH . 
D 4 HOH AAA 187 687 198 HOH HOH . 
D 4 HOH AAA 188 688 129 HOH HOH . 
D 4 HOH AAA 189 689 194 HOH HOH . 
D 4 HOH AAA 190 690 159 HOH HOH . 
D 4 HOH AAA 191 691 153 HOH HOH . 
D 4 HOH AAA 192 692 201 HOH HOH . 
D 4 HOH AAA 193 693 144 HOH HOH . 
D 4 HOH AAA 194 694 167 HOH HOH . 
D 4 HOH AAA 195 695 179 HOH HOH . 
D 4 HOH AAA 196 696 183 HOH HOH . 
D 4 HOH AAA 197 697 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 3 -25.625 -35.991 7.323 1 112.98 ? S DMS 402 AAA 1 
HETATM 2 O O DMS . . . C 3 -26.786 -36.487 8.172 1 69.5 ? O DMS 402 AAA 1 
HETATM 3 C C1 DMS . . . C 3 -26.008 -34.308 6.872 1 102.52 ? C1 DMS 402 AAA 1 
HETATM 4 C C2 DMS . . . C 3 -25.81 -36.727 5.724 1 100.27 ? C2 DMS 402 AAA 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#