data_6Y7Q # _model_server_result.job_id 0YXhHKAczX1uKJST0Pr8Sg _model_server_result.datetime_utc '2024-10-20 00:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6Y7Q # _exptl.entry_id 6Y7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y7Q _cell.length_a 32.784 _cell.length_b 32.784 _cell.length_c 200.681 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 39 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 64 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6Y7Q _atom_sites.fract_transf_matrix[1][1] 0.030503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL AAA 1 201 201 GOL GOL . C 3 EDO AAA 1 202 301 EDO EDO . D 3 EDO AAA 1 203 401 EDO EDO . E 4 HOH AAA 1 301 42 HOH HOH . E 4 HOH AAA 2 302 46 HOH HOH . E 4 HOH AAA 3 303 62 HOH HOH . E 4 HOH AAA 4 304 61 HOH HOH . E 4 HOH AAA 5 305 9 HOH HOH . E 4 HOH AAA 6 306 12 HOH HOH . E 4 HOH AAA 7 307 45 HOH HOH . E 4 HOH AAA 8 308 40 HOH HOH . E 4 HOH AAA 9 309 65 HOH HOH . E 4 HOH AAA 10 310 2 HOH HOH . E 4 HOH AAA 11 311 26 HOH HOH . E 4 HOH AAA 12 312 43 HOH HOH . E 4 HOH AAA 13 313 60 HOH HOH . E 4 HOH AAA 14 314 24 HOH HOH . E 4 HOH AAA 15 315 25 HOH HOH . E 4 HOH AAA 16 316 20 HOH HOH . E 4 HOH AAA 17 317 55 HOH HOH . E 4 HOH AAA 18 318 31 HOH HOH . E 4 HOH AAA 19 319 23 HOH HOH . E 4 HOH AAA 20 320 28 HOH HOH . E 4 HOH AAA 21 321 35 HOH HOH . E 4 HOH AAA 22 322 41 HOH HOH . E 4 HOH AAA 23 323 34 HOH HOH . E 4 HOH AAA 24 324 58 HOH HOH . E 4 HOH AAA 25 325 8 HOH HOH . E 4 HOH AAA 26 326 15 HOH HOH . E 4 HOH AAA 27 327 52 HOH HOH . E 4 HOH AAA 28 328 14 HOH HOH . E 4 HOH AAA 29 329 10 HOH HOH . E 4 HOH AAA 30 330 54 HOH HOH . E 4 HOH AAA 31 331 56 HOH HOH . E 4 HOH AAA 32 332 47 HOH HOH . E 4 HOH AAA 33 333 51 HOH HOH . E 4 HOH AAA 34 334 7 HOH HOH . E 4 HOH AAA 35 335 17 HOH HOH . E 4 HOH AAA 36 336 48 HOH HOH . E 4 HOH AAA 37 337 11 HOH HOH . E 4 HOH AAA 38 338 57 HOH HOH . E 4 HOH AAA 39 339 4 HOH HOH . E 4 HOH AAA 40 340 21 HOH HOH . E 4 HOH AAA 41 341 16 HOH HOH . E 4 HOH AAA 42 342 37 HOH HOH . E 4 HOH AAA 43 343 36 HOH HOH . E 4 HOH AAA 44 344 3 HOH HOH . E 4 HOH AAA 45 345 18 HOH HOH . E 4 HOH AAA 46 346 22 HOH HOH . E 4 HOH AAA 47 347 13 HOH HOH . E 4 HOH AAA 48 348 5 HOH HOH . E 4 HOH AAA 49 349 30 HOH HOH . E 4 HOH AAA 50 350 33 HOH HOH . E 4 HOH AAA 51 351 32 HOH HOH . E 4 HOH AAA 52 352 19 HOH HOH . E 4 HOH AAA 53 353 59 HOH HOH . E 4 HOH AAA 54 354 6 HOH HOH . E 4 HOH AAA 55 355 63 HOH HOH . E 4 HOH AAA 56 356 50 HOH HOH . E 4 HOH AAA 57 357 27 HOH HOH . E 4 HOH AAA 58 358 39 HOH HOH . E 4 HOH AAA 59 359 38 HOH HOH . E 4 HOH AAA 60 360 66 HOH HOH . E 4 HOH AAA 61 361 29 HOH HOH . E 4 HOH AAA 62 362 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 14.849 -18.284 21.488 1 39.44 ? C1 GOL 201 AAA 1 HETATM 2 O O1 GOL . . . B 2 15.663 -18.069 22.676 1 38.65 ? O1 GOL 201 AAA 1 HETATM 3 C C2 GOL . . . B 2 14.758 -19.762 21.071 1 36.61 ? C2 GOL 201 AAA 1 HETATM 4 O O2 GOL . . . B 2 14.226 -20.559 22.114 1 53.75 ? O2 GOL 201 AAA 1 HETATM 5 C C3 GOL . . . B 2 13.85 -20.066 19.923 1 37.6 ? C3 GOL 201 AAA 1 HETATM 6 O O3 GOL . . . B 2 13.562 -21.445 19.802 1 45.29 ? O3 GOL 201 AAA 1 HETATM 7 H H11 GOL . . . B 2 15.228 -17.767 20.744 1 39.97 ? H11 GOL 201 AAA 1 HETATM 8 H H12 GOL . . . B 2 13.938 -17.954 21.667 1 38.31 ? H12 GOL 201 AAA 1 HETATM 9 H HO1 GOL . . . B 2 15.644 -17.221 22.822 0 38.84 ? HO1 GOL 201 AAA 1 HETATM 10 H H2 GOL . . . B 2 15.665 -20.082 20.842 1 38.86 ? H2 GOL 201 AAA 1 HETATM 11 H HO2 GOL . . . B 2 13.56 -20.995 21.82 0 51.81 ? HO2 GOL 201 AAA 1 HETATM 12 H H31 GOL . . . B 2 14.279 -19.767 19.096 1 39.2 ? H31 GOL 201 AAA 1 HETATM 13 H H32 GOL . . . B 2 13.008 -19.58 20.042 1 38.12 ? H32 GOL 201 AAA 1 HETATM 14 H HO3 GOL . . . B 2 13.991 -21.868 20.396 1 43.24 ? HO3 GOL 201 AAA 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #