data_6Y7U # _model_server_result.job_id zaCtYwvsrQsUwZsKQj66jQ _model_server_result.datetime_utc '2024-11-14 06:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6y7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6Y7U # _exptl.entry_id 6Y7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Y7U _cell.length_a 54.256 _cell.length_b 111.36 _cell.length_c 38.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Y7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6Y7U _atom_sites.fract_transf_matrix[1][1] 0.018431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 201 FMN FMN . D 2 FMN B 1 201 201 FMN FMN . E 3 HOH A 1 301 143 HOH HOH . E 3 HOH A 2 302 193 HOH HOH . E 3 HOH A 3 303 141 HOH HOH . E 3 HOH A 4 304 131 HOH HOH . E 3 HOH A 5 305 134 HOH HOH . E 3 HOH A 6 306 165 HOH HOH . E 3 HOH A 7 307 117 HOH HOH . E 3 HOH A 8 308 39 HOH HOH . E 3 HOH A 9 309 85 HOH HOH . E 3 HOH A 10 310 51 HOH HOH . E 3 HOH A 11 311 96 HOH HOH . E 3 HOH A 12 312 86 HOH HOH . E 3 HOH A 13 313 16 HOH HOH . E 3 HOH A 14 314 35 HOH HOH . E 3 HOH A 15 315 52 HOH HOH . E 3 HOH A 16 316 171 HOH HOH . E 3 HOH A 17 317 91 HOH HOH . E 3 HOH A 18 318 198 HOH HOH . E 3 HOH A 19 319 50 HOH HOH . E 3 HOH A 20 320 24 HOH HOH . E 3 HOH A 21 321 62 HOH HOH . E 3 HOH A 22 322 65 HOH HOH . E 3 HOH A 23 323 63 HOH HOH . E 3 HOH A 24 324 89 HOH HOH . E 3 HOH A 25 325 61 HOH HOH . E 3 HOH A 26 326 160 HOH HOH . E 3 HOH A 27 327 150 HOH HOH . E 3 HOH A 28 328 98 HOH HOH . E 3 HOH A 29 329 69 HOH HOH . E 3 HOH A 30 330 72 HOH HOH . E 3 HOH A 31 331 67 HOH HOH . E 3 HOH A 32 332 29 HOH HOH . E 3 HOH A 33 333 205 HOH HOH . E 3 HOH A 34 334 34 HOH HOH . E 3 HOH A 35 335 84 HOH HOH . E 3 HOH A 36 336 219 HOH HOH . E 3 HOH A 37 337 132 HOH HOH . E 3 HOH A 38 338 1 HOH HOH . E 3 HOH A 39 339 74 HOH HOH . E 3 HOH A 40 340 209 HOH HOH . E 3 HOH A 41 341 55 HOH HOH . E 3 HOH A 42 342 130 HOH HOH . E 3 HOH A 43 343 103 HOH HOH . E 3 HOH A 44 344 161 HOH HOH . E 3 HOH A 45 345 31 HOH HOH . E 3 HOH A 46 346 118 HOH HOH . E 3 HOH A 47 347 15 HOH HOH . E 3 HOH A 48 348 49 HOH HOH . E 3 HOH A 49 349 97 HOH HOH . E 3 HOH A 50 350 33 HOH HOH . E 3 HOH A 51 351 128 HOH HOH . E 3 HOH A 52 352 18 HOH HOH . E 3 HOH A 53 353 46 HOH HOH . E 3 HOH A 54 354 213 HOH HOH . E 3 HOH A 55 355 25 HOH HOH . E 3 HOH A 56 356 218 HOH HOH . E 3 HOH A 57 357 139 HOH HOH . E 3 HOH A 58 358 102 HOH HOH . E 3 HOH A 59 359 212 HOH HOH . E 3 HOH A 60 360 172 HOH HOH . E 3 HOH A 61 361 71 HOH HOH . E 3 HOH A 62 362 129 HOH HOH . E 3 HOH A 63 363 116 HOH HOH . E 3 HOH A 64 364 66 HOH HOH . E 3 HOH A 65 365 32 HOH HOH . E 3 HOH A 66 366 105 HOH HOH . E 3 HOH A 67 367 75 HOH HOH . E 3 HOH A 68 368 76 HOH HOH . E 3 HOH A 69 369 88 HOH HOH . E 3 HOH A 70 370 30 HOH HOH . E 3 HOH A 71 371 64 HOH HOH . E 3 HOH A 72 372 87 HOH HOH . E 3 HOH A 73 373 38 HOH HOH . E 3 HOH A 74 374 68 HOH HOH . E 3 HOH A 75 375 41 HOH HOH . E 3 HOH A 76 376 47 HOH HOH . E 3 HOH A 77 377 17 HOH HOH . E 3 HOH A 78 378 54 HOH HOH . E 3 HOH A 79 379 159 HOH HOH . E 3 HOH A 80 380 108 HOH HOH . E 3 HOH A 81 381 73 HOH HOH . E 3 HOH A 82 382 173 HOH HOH . E 3 HOH A 83 383 94 HOH HOH . E 3 HOH A 84 384 170 HOH HOH . E 3 HOH A 85 385 169 HOH HOH . E 3 HOH A 86 386 189 HOH HOH . E 3 HOH A 87 387 201 HOH HOH . E 3 HOH A 88 388 151 HOH HOH . E 3 HOH A 89 389 168 HOH HOH . E 3 HOH A 90 390 48 HOH HOH . E 3 HOH A 91 391 53 HOH HOH . E 3 HOH A 92 392 99 HOH HOH . E 3 HOH A 93 393 203 HOH HOH . E 3 HOH A 94 394 138 HOH HOH . E 3 HOH A 95 395 152 HOH HOH . E 3 HOH A 96 396 174 HOH HOH . E 3 HOH A 97 397 40 HOH HOH . E 3 HOH A 98 398 202 HOH HOH . E 3 HOH A 99 399 188 HOH HOH . E 3 HOH A 100 400 127 HOH HOH . E 3 HOH A 101 401 162 HOH HOH . E 3 HOH A 102 402 175 HOH HOH . E 3 HOH A 103 403 90 HOH HOH . E 3 HOH A 104 404 199 HOH HOH . E 3 HOH A 105 405 92 HOH HOH . E 3 HOH A 106 406 70 HOH HOH . E 3 HOH A 107 407 214 HOH HOH . E 3 HOH A 108 408 93 HOH HOH . E 3 HOH A 109 409 140 HOH HOH . E 3 HOH A 110 410 133 HOH HOH . F 3 HOH B 1 301 182 HOH HOH . F 3 HOH B 2 302 210 HOH HOH . F 3 HOH B 3 303 124 HOH HOH . F 3 HOH B 4 304 179 HOH HOH . F 3 HOH B 5 305 101 HOH HOH . F 3 HOH B 6 306 82 HOH HOH . F 3 HOH B 7 307 167 HOH HOH . F 3 HOH B 8 308 142 HOH HOH . F 3 HOH B 9 309 57 HOH HOH . F 3 HOH B 10 310 185 HOH HOH . F 3 HOH B 11 311 107 HOH HOH . F 3 HOH B 12 312 149 HOH HOH . F 3 HOH B 13 313 114 HOH HOH . F 3 HOH B 14 314 11 HOH HOH . F 3 HOH B 15 315 144 HOH HOH . F 3 HOH B 16 316 43 HOH HOH . F 3 HOH B 17 317 42 HOH HOH . F 3 HOH B 18 318 104 HOH HOH . F 3 HOH B 19 319 111 HOH HOH . F 3 HOH B 20 320 181 HOH HOH . F 3 HOH B 21 321 36 HOH HOH . F 3 HOH B 22 322 113 HOH HOH . F 3 HOH B 23 323 109 HOH HOH . F 3 HOH B 24 324 81 HOH HOH . F 3 HOH B 25 325 58 HOH HOH . F 3 HOH B 26 326 197 HOH HOH . F 3 HOH B 27 327 80 HOH HOH . F 3 HOH B 28 328 3 HOH HOH . F 3 HOH B 29 329 207 HOH HOH . F 3 HOH B 30 330 44 HOH HOH . F 3 HOH B 31 331 148 HOH HOH . F 3 HOH B 32 332 59 HOH HOH . F 3 HOH B 33 333 146 HOH HOH . F 3 HOH B 34 334 95 HOH HOH . F 3 HOH B 35 335 37 HOH HOH . F 3 HOH B 36 336 10 HOH HOH . F 3 HOH B 37 337 120 HOH HOH . F 3 HOH B 38 338 187 HOH HOH . F 3 HOH B 39 339 20 HOH HOH . F 3 HOH B 40 340 100 HOH HOH . F 3 HOH B 41 341 12 HOH HOH . F 3 HOH B 42 342 7 HOH HOH . F 3 HOH B 43 343 9 HOH HOH . F 3 HOH B 44 344 5 HOH HOH . F 3 HOH B 45 345 135 HOH HOH . F 3 HOH B 46 346 26 HOH HOH . F 3 HOH B 47 347 83 HOH HOH . F 3 HOH B 48 348 115 HOH HOH . F 3 HOH B 49 349 23 HOH HOH . F 3 HOH B 50 350 194 HOH HOH . F 3 HOH B 51 351 208 HOH HOH . F 3 HOH B 52 352 79 HOH HOH . F 3 HOH B 53 353 78 HOH HOH . F 3 HOH B 54 354 123 HOH HOH . F 3 HOH B 55 355 154 HOH HOH . F 3 HOH B 56 356 164 HOH HOH . F 3 HOH B 57 357 126 HOH HOH . F 3 HOH B 58 358 119 HOH HOH . F 3 HOH B 59 359 77 HOH HOH . F 3 HOH B 60 360 45 HOH HOH . F 3 HOH B 61 361 2 HOH HOH . F 3 HOH B 62 362 112 HOH HOH . F 3 HOH B 63 363 106 HOH HOH . F 3 HOH B 64 364 191 HOH HOH . F 3 HOH B 65 365 22 HOH HOH . F 3 HOH B 66 366 28 HOH HOH . F 3 HOH B 67 367 217 HOH HOH . F 3 HOH B 68 368 122 HOH HOH . F 3 HOH B 69 369 200 HOH HOH . F 3 HOH B 70 370 13 HOH HOH . F 3 HOH B 71 371 4 HOH HOH . F 3 HOH B 72 372 19 HOH HOH . F 3 HOH B 73 373 147 HOH HOH . F 3 HOH B 74 374 196 HOH HOH . F 3 HOH B 75 375 156 HOH HOH . F 3 HOH B 76 376 110 HOH HOH . F 3 HOH B 77 377 21 HOH HOH . F 3 HOH B 78 378 166 HOH HOH . F 3 HOH B 79 379 27 HOH HOH . F 3 HOH B 80 380 157 HOH HOH . F 3 HOH B 81 381 136 HOH HOH . F 3 HOH B 82 382 56 HOH HOH . F 3 HOH B 83 383 192 HOH HOH . F 3 HOH B 84 384 178 HOH HOH . F 3 HOH B 85 385 163 HOH HOH . F 3 HOH B 86 386 183 HOH HOH . F 3 HOH B 87 387 155 HOH HOH . F 3 HOH B 88 388 6 HOH HOH . F 3 HOH B 89 389 176 HOH HOH . F 3 HOH B 90 390 137 HOH HOH . F 3 HOH B 91 391 158 HOH HOH . F 3 HOH B 92 392 186 HOH HOH . F 3 HOH B 93 393 184 HOH HOH . F 3 HOH B 94 394 153 HOH HOH . F 3 HOH B 95 395 125 HOH HOH . F 3 HOH B 96 396 60 HOH HOH . F 3 HOH B 97 397 145 HOH HOH . F 3 HOH B 98 398 121 HOH HOH . F 3 HOH B 99 399 211 HOH HOH . F 3 HOH B 100 400 216 HOH HOH . F 3 HOH B 101 401 14 HOH HOH . F 3 HOH B 102 402 180 HOH HOH . F 3 HOH B 103 403 195 HOH HOH . F 3 HOH B 104 404 8 HOH HOH . F 3 HOH B 105 405 215 HOH HOH . F 3 HOH B 106 406 190 HOH HOH . F 3 HOH B 107 407 177 HOH HOH . F 3 HOH B 108 408 206 HOH HOH . F 3 HOH B 109 409 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 -7.999 11.347 22.606 1 13.05 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . D 2 -9.242 11.018 22.242 1 14.53 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . D 2 -10.009 10.598 23.146 1 17.14 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . D 2 -9.712 11.153 20.978 1 14.03 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . D 2 -8.939 11.617 19.965 1 14.13 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . D 2 -9.386 11.739 18.799 1 14.42 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . D 2 -7.557 11.987 20.276 1 12.1 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . D 2 -6.694 12.437 19.324 1 11.4 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . D 2 -5.435 12.762 19.669 1 11.13 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . D 2 -4.551 13.22 18.701 1 13.26 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . D 2 -3.244 13.55 19.024 1 13.7 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . D 2 -2.278 14.032 17.961 1 13.62 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . D 2 -2.762 13.394 20.416 1 13.72 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . D 2 -1.345 13.731 20.772 1 13.37 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . D 2 -3.633 12.925 21.391 1 13.66 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . D 2 -4.942 12.587 21.063 1 13.03 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . D 2 -5.83 12.112 22.047 1 13.06 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . D 2 -7.117 11.789 21.676 1 12.63 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . D 2 -5.395 11.847 23.412 1 13.56 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . D 2 -5.568 12.937 24.437 1 14.65 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . D 2 -5.141 14.146 23.819 1 14.9 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . D 2 -4.658 12.587 25.626 1 14.35 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . D 2 -3.319 12.371 25.172 1 18.04 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . D 2 -5.112 11.293 26.316 1 15.06 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . D 2 -6.415 11.452 26.853 1 18.81 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . D 2 -4.179 10.831 27.438 1 22.05 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . D 2 -3.711 11.902 28.26 1 24.84 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . D 2 -4.419 12.36 29.645 0.7 29.16 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . D 2 -4.381 11.213 30.632 0.7 29.17 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . D 2 -3.558 13.524 30.093 0.7 32.81 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . D 2 -5.824 12.729 29.234 0.7 38.72 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #